Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0007501

Physical Location & Seq

Genomic Coordinates Reverse (-)

46771542 .. 46772012

Gene Structure 471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG188500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGAGGTGGATAACAATGCAAAGGAAACTACCTTGGCCTGTTTACCGAATCCAAAACAAAAGAAGGTCGAGGTAGAGAAGAATGTGAAAGAAACTACCGTGGCCTGCAAACCGAATCCAAAACAAGGTAAAAAACACAAAATCTATGTTTTCGGTCTGGAGCACAGAATTGTCGTGAAAGATATCAAGGATATTCAGGAGAAATTGAAGAAGAGCACATATGAAAGAGTGATGTTCCTTTGCAAAAGAGTAAAGGAAACACTCGGTAATCCTGAGAAGTATACCGAATTCTTGAAGCAATTTCACATGTATGCCAGTGGAGTAATAGATGCGACGGAGTTTCTGAATTTGGTGGATGACTCGGTTCAAGCAGATCAGAGTCTGATGCACGATTTTGACGAGTTTTTGGAGCACTATGACAAGGTAGATGCGTTGGTTTCTCTGAATTTTGGACTAGGAGTAGGACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0033993 GO:0035601 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0097305 GO:0098732 GO:1901564 GO:1901700 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

156

Amino Acids

17.92

Weight (kDa)

6.52

Isoelectric Point (pI)

31.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007501)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13800
malus_domestica	MD04G1010500.v1.1
prunus_persica	Prupe.1G010200_v2.0.a1
pyrus_communis	pycom04g00860
rosa_chinensis	RchiOBHm_Chr4g0414721
rosa_laevigata	RLG00000008100 RLG00000008121
rosa_multiflora	Rmu_sc0001192.1_g000028 Rmu_sc0003611.1_g000015 Rmu_sc0008157.1_g000009 Rmu_sc0010606.1_g000009
rosa_roxburghii	Rroxscaffold_5G00358530 Rroxscaffold_5G00358820
rosa_rugosa	Rorug04G0130200 Rorug04G0130200 Rorug04G0132000
rosa_samantha	Rh4AG188500 Rh4AG191300 Rh4BG187500 Rh4BG189400 Rh4CG200800 Rh4CG202200 Rh4DG187100 Rh4DG189800
rosa_wichuraiana	Rw4G016080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	281
AcsI	RAATTY	3 cut(s)	287, 346, 445
AfiI	CCNNNNNNNGG	1 cut(s)	125
AflIII	ACRYGT	1 cut(s)	306
AgsI	TTSAA	3 cut(s)	208, 295, 368
Alw21I	GWGCWC	3 cut(s)	165, 218, 414
AlwNI	CAGNNNCTG	1 cut(s)	382
AoxI	GGCC	2 cut(s)	36, 102
ApoI	RAATTY	3 cut(s)	287, 346, 445
Bbv12I	GWGCWC	3 cut(s)	165, 218, 414
BfaI	CTAG	1 cut(s)	455
BmsI	GCATC	3 cut(s)	319, 375, 418
BpmI	CTGGAG	1 cut(s)	179
BsaJI	CCNNGG	2 cut(s)	33, 99
Bsc4I	CCNNNNNNNGG	1 cut(s)	125
Bse1I	ACTGG	1 cut(s)	315
BseDI	CCNNGG	2 cut(s)	33, 99
BseGI	GGATG	1 cut(s)	361
BseLI	CCNNNNNNNGG	1 cut(s)	125
BseMII	CTCAG	1 cut(s)	264
BseNI	ACTGG	1 cut(s)	315
BshFI	GGCC	2 cut(s)	38, 104
BsiHKAI	GWGCWC	3 cut(s)	165, 218, 414
BslI	CCNNNNNNNGG	1 cut(s)	125
BsnI	GGCC	2 cut(s)	38, 104
Bsp1286I	GDGCHC	3 cut(s)	165, 218, 414
Bsp143I	GATC	1 cut(s)	373
BspANI	GGCC	2 cut(s)	38, 104
BspCNI	CTCAG	1 cut(s)	265
BspQI	GCTCTTC	1 cut(s)	206
BsrI	ACTGG	1 cut(s)	315
BssECI	CCNNGG	2 cut(s)	33, 99
BssMI	GATC	1 cut(s)	373
BssNAI	GTATAC	1 cut(s)	282
BssT1I	CCWWGG	1 cut(s)	33
Bst1107I	GTATAC	1 cut(s)	282
Bst4CI	ACNGT	2 cut(s)	100, 468
Bst6I	CTCTTC	1 cut(s)	206
BstC8I	GCNNGC	1 cut(s)	106
BstDEI	CTNAG	1 cut(s)	273
BstDSI	CCRYGG	1 cut(s)	99
BstF5I	GGATG	1 cut(s)	361
BstKTI	GATC	1 cut(s)	376
BstMBI	GATC	1 cut(s)	373
BstNSI	RCATGY	1 cut(s)	310
BstZ17I	GTATAC	1 cut(s)	282
BsuRI	GGCC	2 cut(s)	38, 104
BtgI	CCRYGG	1 cut(s)	99
BtsCI	GGATG	1 cut(s)	361
BtsIMutI	CAGTG	1 cut(s)	322
Cac8I	GCNNGC	1 cut(s)	106
CaiI	CAGNNNCTG	1 cut(s)	382
CviAII	CATG	1 cut(s)	307
CviJI	RGCY	2 cut(s)	38, 104
CviKI_1	RGCY	2 cut(s)	38, 104
DdeI	CTNAG	1 cut(s)	273
DpnI	GATC	1 cut(s)	375
DpnII	GATC	1 cut(s)	373
Eam1104I	CTCTTC	1 cut(s)	206
EarI	CTCTTC	1 cut(s)	206
Eco130I	CCWWGG	1 cut(s)	33
Eco32I	GATATC	1 cut(s)	184
EcoRI	GAATTC	1 cut(s)	287
EcoRV	GATATC	1 cut(s)	184
EcoT14I	CCWWGG	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	33
FaeI	CATG	1 cut(s)	310
FaiI	YATR	7 cut(s)	147, 220, 222, 282, 308, 312, 417
FatI	CATG	1 cut(s)	306
FauNDI	CATATG	1 cut(s)	220
FblI	GTMKAC	1 cut(s)	281
FokI	GGATG	1 cut(s)	368
FspBI	CTAG	1 cut(s)	455
GsuI	CTGGAG	1 cut(s)	179
HaeIII	GGCC	2 cut(s)	38, 104
Hin1II	CATG	1 cut(s)	310
HinfI	GANTC	4 cut(s)	49, 115, 359, 379
Hpy166II	GTNNAC	2 cut(s)	44, 282
Hpy188I	TCNGA	4 cut(s)	345, 378, 384, 444
Hpy188III	TCNNGA	5 cut(s)	158, 175, 197, 272, 292
Hpy8I	GTNNAC	2 cut(s)	44, 282
Hpy99I	CGWCG	1 cut(s)	337
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	2 cut(s)	100, 468
HpyCH4V	TGCA	4 cut(s)	20, 108, 243, 388
HpyF3I	CTNAG	1 cut(s)	273
Hsp92II	CATG	1 cut(s)	310
Kzo9I	GATC	1 cut(s)	373
LguI	GCTCTTC	1 cut(s)	206
LmnI	GCTCC	2 cut(s)	160, 409
LpnPI	CCDG	6 cut(s)	52, 118, 143, 182, 285, 328
LweI	GCATC	3 cut(s)	319, 375, 418
MaeI	CTAG	1 cut(s)	455
MalI	GATC	1 cut(s)	375
MboI	GATC	1 cut(s)	373
MboII	GAAGA	3 cut(s)	91, 220, 223
MhlI	GDGCHC	3 cut(s)	165, 218, 414
MluCI	AATT	6 cut(s)	168, 203, 287, 299, 346, 445
MlyI	GAGTC	2 cut(s)	353, 388
MnlI	CCTC	1 cut(s)	64
MslI	CAYNNNNRTG	1 cut(s)	309
NdeI	CATATG	1 cut(s)	220
NdeII	GATC	1 cut(s)	373
NlaIII	CATG	1 cut(s)	310
NspI	RCATGY	1 cut(s)	310
PciI	ACATGT	1 cut(s)	306
PciSI	GCTCTTC	1 cut(s)	206
PcsI	WCGNNNNNNNCGW	1 cut(s)	396
PfeI	GAWTC	2 cut(s)	49, 115
PleI	GAGTC	2 cut(s)	353, 387
PpsI	GAGTC	2 cut(s)	353, 387
PscI	ACATGT	1 cut(s)	306
PstNI	CAGNNNCTG	1 cut(s)	382
RseI	CAYNNNNRTG	1 cut(s)	309
SapI	GCTCTTC	1 cut(s)	206
Sau3AI	GATC	1 cut(s)	373
SchI	GAGTC	2 cut(s)	353, 388
SduI	GDGCHC	3 cut(s)	165, 218, 414
SetI	ASST	6 cut(s)	9, 35, 69, 75, 130, 426
SfaNI	GCATC	3 cut(s)	319, 375, 418
SmiMI	CAYNNNNRTG	1 cut(s)	309
Sse9I	AATT	6 cut(s)	168, 203, 287, 299, 346, 445
SspMI	CTAG	1 cut(s)	455
StyI	CCWWGG	1 cut(s)	33
TaaI	ACNGT	2 cut(s)	100, 468
TaqI	TCGA	1 cut(s)	69
TaqII	GACCGA	1 cut(s)	143
TasI	AATT	6 cut(s)	168, 203, 287, 299, 346, 445
TfiI	GAWTC	2 cut(s)	49, 115
TscAI	CASTG	1 cut(s)	322
TspDTI	ATGAA	1 cut(s)	237
TspGWI	ACGGA	1 cut(s)	350
TspRI	CASTG	1 cut(s)	322
XapI	RAATTY	3 cut(s)	287, 346, 445
XceI	RCATGY	1 cut(s)	310
XmiI	GTMKAC	1 cut(s)	281
XspI	CTAG	1 cut(s)	455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.