Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003174

Physical Location & Seq

Genomic Coordinates Reverse (-)

20854565 .. 20857919

Gene Structure 3355 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0130200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGATTCGAATTTCAGCCCAAGCCCTACGGAGGCACATCCTGATACGATGGATTTTCTGTCTCTTGCATGGTGCAATTTTGCAGTACAAGCTTTGCAACCAGTGCAACAAGACCACCAATCTCTAGTTTCATTAGATGATCCAATTATCAAGTTTGAGAGCCCGAACATGACTCAAATCACGAAGTTGGACAAGAATGCAAAGATGGATGGTGCAGATGCCAAGCCTTTACCACCATGGAAATCTAATGATGTAAAGTCATGGATATGGATGCAACAAGCCATGCATCCAGAATTGAACTACAACAGCTATTTCCGAAAGAAATGGCTGTCATGGAAGATAGTGCCATTCAAGAACATGTCGATCAAGAAGTGGCTGAAGGAGATTAAAGAAAGGCGGAAAGAGGAACACAGGTTGCAAAGAGCTGAAGTCCATGCAGCTATATCTATGGCAGGTGTGGCAGCAGCGCTTGCTGCCATTGCGGCTGAAAGCTCTGGAAAGAATGAGAGCACTGTTAAGGAAGCAGCTGTGGCTTCTGCAGCTGCTCTGGTGGCAGCCCAGTGTGCAAAAGTTGCAGAAGCAATGGGAGCAAAGAAGGAACAGATCAGCAGTGTAATAGGTTCAGCCATGAGTAGTACAAGTGCAAGTGATATCTTAACCCTCACAGCTGCAGCTGCAACATCATTAAAAGGAGCAGCTACACTTAAAGCAAGATCAGGATGCAAGAATATGCTACATGGGGGTGCACCTGTGCTGCCCATCGAGGAGAGCCATGAGGTTGACTTCGACTTTGAAAAGTGTAGGTCCATGCTCGGAATGGGTGTGCACCTCAGCATCGAAACACCAGATGGGAAGTACATGGTCAGATCAGTGTCCGTCATCCTAAGCAGTGAAGCCAAGGTTGTTCTTAAAATAAGGAAGCTCAGTCTGTTGAAAAGCAAGCAGGAAAGTATCATACTGGACATGCATGCAGAGCTGTATAAAGATTCAGAGGCAGAGACTGGTACAGGTTATCTTATCGTCTTGACAACGAGTAAGGGGACATTCAAACTTGACATGGAAGATGACTATCAACGTTACACGACATGGGCCACTACCATTAATCATATGCTGATGCTCTCTACTTCATTATCAAAATATCATCTTCAGTTCTACAAAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04140 map04140

Pfam Domains

Protein Families

Atg14

Protein Analysis

387

Amino Acids

42.77

Weight (kDa)

8.44

Isoelectric Point (pI)

41.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_canalis	PF05703	13 - 256	7.1e-72	Auxin canalisation
PH_2	PF08458	277 - 374	5.2e-19	Plant pleckstrin homology-like region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32760 AT2G32760 AT2G32760
fragaria_vesca	FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790
malus_domestica	MD00G1113200.v1.1 MD04G1010600.v1.1
prunus_persica	Prupe.1G010300_v2.0.a1 Prupe.1G010300_v2.0.a1 Prupe.1G010300_v2.0.a1
pyrus_communis	pycom04g00870 pycom420g01290
rosa_chinensis	RchiOBHm_Chr4g0414711
rosa_laevigata	RLG00000008122
rosa_multiflora	Rmu_sc0001192.1_g000027 Rmu_sc0010606.1_g000008
rosa_roxburghii	Rroxscaffold_5G00358520
rosa_rugosa	Rorug04G0129800 Rorug04G0129900 Rorug04G0130000 Rorug04G0130100 Rorug04G0130200 Rorug04G0130200 Rorug04G0130200
rosa_samantha	Rh4AG188300 Rh4BG187300 Rh4CG200600 Rh4DG187000
rosa_wichuraiana	Rw4G016070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	443
Acc36I	ACCTGC	1 cut(s)	443
AciI	CCGC	2 cut(s)	397, 482
AclI	AACGTT	1 cut(s)	1075
AclWI	GGATC	1 cut(s)	134
AcsI	RAATTY	1 cut(s)	10
AcuI	CTGAAG	3 cut(s)	398, 447, 1130
AfaI	GTAC	4 cut(s)	87, 637, 857, 1006
AfeI	AGCGCT	1 cut(s)	468
AfiI	CCNNNNNNNGG	1 cut(s)	31
AflIII	ACRYGT	1 cut(s)	357
AgsI	TTSAA	5 cut(s)	298, 352, 794, 934, 1048
Alw21I	GWGCWC	3 cut(s)	512, 748, 828
Alw26I	GTCTC	2 cut(s)	66, 992
Alw44I	GTGCAC	2 cut(s)	744, 824
AlwI	GGATC	1 cut(s)	134
AlwNI	CAGNNNCTG	1 cut(s)	1001
Aor51HI	AGCGCT	1 cut(s)	468
AoxI	GGCC	1 cut(s)	1089
ApaLI	GTGCAC	2 cut(s)	744, 824
ApoI	RAATTY	1 cut(s)	10
ArsI	GACNNNNNNTTYG	2 cut(s)	773, 805
AseI	ATTAAT	1 cut(s)	1101
AspLEI	GCGC	1 cut(s)	469
AspS9I	GGNCC	2 cut(s)	804, 1089
AsuII	TTCGAA	1 cut(s)	8
AvaII	GGWCC	1 cut(s)	804
BaeGI	GKGCMC	2 cut(s)	748, 828
BanII	GRGCYC	1 cut(s)	164
Bbv12I	GWGCWC	3 cut(s)	512, 748, 828
BbvCI	CCTCAGC	1 cut(s)	830
BccI	CCATC	5 cut(s)	43, 199, 203, 767, 842
BcoDI	GTCTC	2 cut(s)	66, 992
BfaI	CTAG	1 cut(s)	125
BfmI	CTRYAG	2 cut(s)	537, 669
BfoI	RGCGCY	1 cut(s)	470
BfuAI	ACCTGC	1 cut(s)	443
BglI	GCCNNNNNGGC	1 cut(s)	482
Bme18I	GGWCC	1 cut(s)	804
BmgT120I	GGNCC	2 cut(s)	804, 1089
BmrI	ACTGGG	1 cut(s)	553
BmsI	GCATC	6 cut(s)	208, 261, 295, 710, 843, 1104
BmuI	ACTGGG	1 cut(s)	553
Bpu10I	CCTNAGC	2 cut(s)	830, 884
Bpu14I	TTCGAA	1 cut(s)	8
BsaBI	GATNNNNATC	1 cut(s)	1068
BsaJI	CCNNGG	2 cut(s)	236, 897
Bsc4I	CCNNNNNNNGG	1 cut(s)	31
Bse1I	ACTGG	4 cut(s)	101, 559, 963, 1006
Bse3DI	GCAATG	2 cut(s)	477, 588
Bse8I	GATNNNNATC	1 cut(s)	1068
BseDI	CCNNGG	2 cut(s)	236, 897
BseGI	GGATG	6 cut(s)	37, 214, 276, 286, 725, 879
BseJI	GATNNNNATC	1 cut(s)	1068
BseLI	CCNNNNNNNGG	1 cut(s)	31
BseMI	GCAATG	2 cut(s)	477, 588
BseMII	CTCAG	2 cut(s)	844, 937
BseNI	ACTGG	4 cut(s)	101, 559, 963, 1006
BseRI	GAGGAG	1 cut(s)	779
BseSI	GKGCMC	2 cut(s)	748, 828
BsgI	GTGCAG	1 cut(s)	234
BshFI	GGCC	1 cut(s)	1091
BsiHKAI	GWGCWC	3 cut(s)	512, 748, 828
BslFI	GGGAC	1 cut(s)	1054
BslI	CCNNNNNNNGG	1 cut(s)	31
BsmAI	GTCTC	2 cut(s)	66, 992
BsmFI	GGGAC	1 cut(s)	1054
BsmI	GAATGC	1 cut(s)	202
BsnI	GGCC	1 cut(s)	1091
Bsp119I	TTCGAA	1 cut(s)	8
Bsp1286I	GDGCHC	4 cut(s)	164, 512, 748, 828
Bsp143I	GATC	5 cut(s)	139, 363, 603, 713, 866
Bsp19I	CCATGG	1 cut(s)	236
BspACI	CCGC	2 cut(s)	397, 482
BspANI	GGCC	1 cut(s)	1091
BspCNI	CTCAG	2 cut(s)	843, 936
BspMAI	CTGCAG	2 cut(s)	541, 673
BspMI	ACCTGC	1 cut(s)	443
BspPI	GGATC	1 cut(s)	134
BspT104I	TTCGAA	1 cut(s)	8
BsrDI	GCAATG	2 cut(s)	477, 588
BsrI	ACTGG	4 cut(s)	101, 559, 963, 1006
BssECI	CCNNGG	2 cut(s)	236, 897
BssMI	GATC	5 cut(s)	139, 363, 603, 713, 866
BssT1I	CCWWGG	2 cut(s)	236, 897
Bst4CI	ACNGT	1 cut(s)	514
BstAPI	GCANNNNNTGC	3 cut(s)	103, 470, 572
BstBI	TTCGAA	1 cut(s)	8
BstC8I	GCNNGC	3 cut(s)	471, 941, 969
BstDEI	CTNAG	3 cut(s)	830, 884, 923
BstDSI	CCRYGG	1 cut(s)	236
BstF5I	GGATG	6 cut(s)	37, 214, 276, 286, 725, 879
BstH2I	RGCGCY	1 cut(s)	470
BstHHI	GCGC	1 cut(s)	469
BstKTI	GATC	5 cut(s)	142, 366, 606, 716, 869
BstMAI	GTCTC	2 cut(s)	66, 992
BstMBI	GATC	5 cut(s)	139, 363, 603, 713, 866
BstNSI	RCATGY	3 cut(s)	361, 967, 971
BstSFI	CTRYAG	2 cut(s)	537, 669
BstSLI	GKGCMC	2 cut(s)	748, 828
BsuRI	GGCC	1 cut(s)	1091
BtgI	CCRYGG	1 cut(s)	236
BtsCI	GGATG	6 cut(s)	37, 214, 276, 286, 725, 879
BtsI	GCAGTG	2 cut(s)	616, 895
BtsIMutI	CAGTG	6 cut(s)	108, 510, 566, 616, 876, 895
BveI	ACCTGC	1 cut(s)	443
Cac8I	GCNNGC	3 cut(s)	471, 941, 969
CaiI	CAGNNNCTG	1 cut(s)	1001
CfoI	GCGC	1 cut(s)	469
Cfr13I	GGNCC	2 cut(s)	804, 1089
Csp6I	GTAC	4 cut(s)	86, 636, 856, 1005
CviQI	GTAC	4 cut(s)	86, 636, 856, 1005
DdeI	CTNAG	3 cut(s)	830, 884, 923
DpnI	GATC	5 cut(s)	141, 365, 605, 715, 868
DpnII	GATC	5 cut(s)	139, 363, 603, 713, 866
EciI	GGCGGA	1 cut(s)	412
Eco130I	CCWWGG	2 cut(s)	236, 897
Eco24I	GRGCYC	1 cut(s)	164
Eco32I	GATATC	1 cut(s)	652
Eco47I	GGWCC	1 cut(s)	804
Eco47III	AGCGCT	1 cut(s)	468
Eco57I	CTGAAG	3 cut(s)	398, 447, 1130
EcoRV	GATATC	1 cut(s)	652
EcoT14I	CCWWGG	2 cut(s)	236, 897
EcoT22I	ATGCAT	2 cut(s)	288, 969
EcoT38I	GRGCYC	1 cut(s)	164
ErhI	CCWWGG	2 cut(s)	236, 897
FaqI	GGGAC	1 cut(s)	1054
FauNDI	CATATG	1 cut(s)	1107
FokI	GGATG	6 cut(s)	24, 221, 273, 283, 732, 866
FriOI	GRGCYC	1 cut(s)	164
FspBI	CTAG	1 cut(s)	125
GlaI	GCGC	1 cut(s)	468
HaeII	RGCGCY	1 cut(s)	470
HaeIII	GGCC	1 cut(s)	1091
HhaI	GCGC	1 cut(s)	469
Hin6I	GCGC	1 cut(s)	467
HinP1I	GCGC	1 cut(s)	467
HincII	GTYRAC	1 cut(s)	781
HindII	GTYRAC	1 cut(s)	781
HindIII	AAGCTT	1 cut(s)	90
HinfI	GANTC	3 cut(s)	5, 172, 986
Hpy166II	GTNNAC	3 cut(s)	746, 781, 826
Hpy188I	TCNGA	4 cut(s)	317, 815, 866, 991
Hpy188III	TCNNGA	8 cut(s)	41, 181, 290, 352, 367, 495, 717, 1024
Hpy8I	GTNNAC	3 cut(s)	746, 781, 826
HpyAV	CCTTC	2 cut(s)	373, 589
HpyCH4III	ACNGT	1 cut(s)	514
HpyCH4IV	ACGT	1 cut(s)	1075
HpyF3I	CTNAG	3 cut(s)	830, 884, 923
HpySE526I	ACGT	1 cut(s)	1075
HspAI	GCGC	1 cut(s)	467
Kzo9I	GATC	5 cut(s)	139, 363, 603, 713, 866
LmnI	GCTCC	2 cut(s)	587, 692
LweI	GCATC	6 cut(s)	208, 261, 295, 710, 843, 1104
MaeI	CTAG	1 cut(s)	125
MaeII	ACGT	1 cut(s)	1075
MaeIII	GTNAC	1 cut(s)	1076
MalI	GATC	5 cut(s)	141, 365, 605, 715, 868
MboI	GATC	5 cut(s)	139, 363, 603, 713, 866
MboII	GAAGA	3 cut(s)	349, 1073, 1136
MhlI	GDGCHC	4 cut(s)	164, 512, 748, 828
MluCI	AATT	4 cut(s)	10, 76, 144, 293
MlyI	GAGTC	1 cut(s)	166
MmeI	TCCRAC	1 cut(s)	168
MnlI	CCTC	7 cut(s)	25, 397, 671, 757, 769, 839, 985
Mph1103I	ATGCAT	2 cut(s)	288, 969
MseI	TTAA	7 cut(s)	387, 516, 656, 686, 705, 909, 1101
MslI	CAYNNNNRTG	2 cut(s)	265, 741
MspA1I	CMGCKG	4 cut(s)	527, 542, 668, 674
Mva1269I	GAATGC	1 cut(s)	202
NcoI	CCATGG	1 cut(s)	236
NdeI	CATATG	1 cut(s)	1107
NdeII	GATC	5 cut(s)	139, 363, 603, 713, 866
NsiI	ATGCAT	2 cut(s)	288, 969
NspI	RCATGY	3 cut(s)	361, 967, 971
NspV	TTCGAA	1 cut(s)	8
PaeI	GCATGC	1 cut(s)	971
PaqCI	CACCTGC	1 cut(s)	443
PciI	ACATGT	1 cut(s)	357
PctI	GAATGC	1 cut(s)	202
PfeI	GAWTC	2 cut(s)	5, 986
PleI	GAGTC	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	166
PscI	ACATGT	1 cut(s)	357
PshBI	ATTAAT	1 cut(s)	1101
Psp1406I	AACGTT	1 cut(s)	1075
PspPI	GGNCC	2 cut(s)	804, 1089
PstI	CTGCAG	2 cut(s)	541, 673
PstNI	CAGNNNCTG	1 cut(s)	1001
PvuII	CAGCTG	4 cut(s)	527, 542, 668, 674
RsaI	GTAC	4 cut(s)	87, 637, 857, 1006
RsaNI	GTAC	4 cut(s)	86, 636, 856, 1005
RseI	CAYNNNNRTG	2 cut(s)	265, 741
SaqAI	TTAA	7 cut(s)	387, 516, 656, 686, 705, 909, 1101
Sau3AI	GATC	5 cut(s)	139, 363, 603, 713, 866
Sau96I	GGNCC	2 cut(s)	804, 1089
SchI	GAGTC	1 cut(s)	166
SduI	GDGCHC	4 cut(s)	164, 512, 748, 828
SfaNI	GCATC	6 cut(s)	208, 261, 295, 710, 843, 1104
SfcI	CTRYAG	2 cut(s)	537, 669
SfuI	TTCGAA	1 cut(s)	8
SinI	GGWCC	1 cut(s)	804
SmiMI	CAYNNNNRTG	2 cut(s)	265, 741
SphI	GCATGC	1 cut(s)	971
Sse9I	AATT	4 cut(s)	10, 76, 144, 293
SsiI	CCGC	2 cut(s)	397, 482
SspMI	CTAG	1 cut(s)	125
StyI	CCWWGG	2 cut(s)	236, 897
TaaI	ACNGT	1 cut(s)	514
TaiI	ACGT	1 cut(s)	1078
TaqI	TCGA	5 cut(s)	8, 362, 762, 786, 837
TasI	AATT	4 cut(s)	10, 76, 144, 293
TatI	WGTACW	3 cut(s)	85, 635, 855
TauI	GCSGC	1 cut(s)	485
TfiI	GAWTC	2 cut(s)	5, 986
Tru1I	TTAA	7 cut(s)	387, 516, 656, 686, 705, 909, 1101
Tru9I	TTAA	7 cut(s)	387, 516, 656, 686, 705, 909, 1101
TscAI	CASTG	6 cut(s)	108, 517, 566, 616, 876, 895
TspDTI	ATGAA	2 cut(s)	120, 1116
TspGWI	ACGGA	2 cut(s)	44, 865
TspRI	CASTG	6 cut(s)	108, 517, 566, 616, 876, 895
VneI	GTGCAC	2 cut(s)	744, 824
VpaK11BI	GGWCC	1 cut(s)	804
VspI	ATTAAT	1 cut(s)	1101
XapI	RAATTY	1 cut(s)	10
XceI	RCATGY	3 cut(s)	361, 967, 971
XcmI	CCANNNNNNNNNTGG	1 cut(s)	814
XspI	CTAG	1 cut(s)	125
Zsp2I	ATGCAT	2 cut(s)	288, 969

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.