Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003174

Physical Location & Seq

Genomic Coordinates Forward (+)

20788746 .. 20790952

Gene Structure 2207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0129900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGCCCTTCTATCTTCTCCTCGTCCTCTCCCAACCCACTTCTCTGCTTCCACCTCCACTTCTCTACTTGTCCGCCGCCGCCCAATCACCGCCTGCCAAGTCTGCACCCCCAAGCAACCCTTACATGAGTCCACTCTCAATGTCGCCGAAGGTTTTGCCGAGGATGAGCTCTGGGCCGCCGCCTGTCTCCGTGTTCGGTCCTTCTACCAGTTCAAGCCCACCACGTTCGGCCTCCAAGATCACAAAAAGTTCTTGGCGGAGCGAGAGTTTGAAGCTATCAAGGAACGTGTTAGTGGGAAGAGGAAGGGTTTTGGGAGAGTTTCGTGTGTAAATGCTACAGTCCCACTTTCGCAATTCTCAAGCCTTTCATTTCCGGCAGATGATTTATGTGCTTCCTGTAAGTTTACCGACAATGGAGAAGATCGAGTAGTAGTTGGGACCCTTGATCTTAACCAGTGTGTAAGTCTTCCAGATGAGATAGCAGGAAGAAGACCAGAGGCGATTGGAGCTGATTTTGCAAGGGCATATCTGAGTAATGTATGTGTTGCCAAGGAACTGCATAGAAATGGTTTAGGTCATGCTCTTGTGGCAAAGTCAAAGTTAGTTGCGCGAGATTGGGGCATAAGTGATCTGTATGTTCATGTTGCTGTTGATAATGAACCAGCAAAACAGTTGTACATGAAGAGTGGTTTCGTTTATGAGAGTGACGAACCTGCATGGCAGGCCAGGTTCCTGGACCGGCCAAGAAGGTTACTTTTGTGGTTTGGTATTCCAGGCGTGCAACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04140 map04140

Pfam Domains

Protein Families

Atg14

Protein Analysis

262

Amino Acids

29.13

Weight (kDa)

8.61

Isoelectric Point (pI)

46.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_1	PF00583	143 - 231	8e-10	Acetyltransferase (GNAT) family
Acetyltransf_7	PF13508	174 - 232	4.4e-06	Acetyltransferase (GNAT) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32760 AT2G32760 AT2G32760
fragaria_vesca	FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790
malus_domestica	MD00G1113200.v1.1 MD04G1010600.v1.1
prunus_persica	Prupe.1G010300_v2.0.a1 Prupe.1G010300_v2.0.a1 Prupe.1G010300_v2.0.a1
pyrus_communis	pycom04g00870 pycom420g01290
rosa_chinensis	RchiOBHm_Chr4g0414711
rosa_laevigata	RLG00000008122
rosa_multiflora	Rmu_sc0001192.1_g000027 Rmu_sc0010606.1_g000008
rosa_roxburghii	Rroxscaffold_5G00358520
rosa_rugosa	Rorug04G0129800 Rorug04G0129900 Rorug04G0130000 Rorug04G0130100 Rorug04G0130200 Rorug04G0130200 Rorug04G0130200
rosa_samantha	Rh4AG188300 Rh4BG187300 Rh4CG200600 Rh4DG187000
rosa_wichuraiana	Rw4G016070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	721
AccII	CGCG	1 cut(s)	610
AciI	CCGC	7 cut(s)	73, 76, 79, 90, 177, 180, 257
AcoI	YGGCCR	1 cut(s)	740
AfaI	GTAC	1 cut(s)	677
AflIII	ACRYGT	1 cut(s)	286
AgsI	TTSAA	2 cut(s)	214, 272
AjnI	CCWGG	3 cut(s)	725, 732, 772
AluBI	AGCT	3 cut(s)	169, 275, 509
AluI	AGCT	3 cut(s)	169, 275, 509
Alw21I	GWGCWC	1 cut(s)	171
Alw26I	GTCTC	1 cut(s)	191
AoxI	GGCC	5 cut(s)	3, 174, 229, 723, 740
AspLEI	GCGC	1 cut(s)	610
AspS9I	GGNCC	5 cut(s)	4, 174, 198, 438, 736
AsuHPI	GGTGA	1 cut(s)	79
AvaII	GGWCC	3 cut(s)	198, 438, 736
BanII	GRGCYC	1 cut(s)	171
BbsI	GAAGAC	2 cut(s)	458, 496
Bbv12I	GWGCWC	1 cut(s)	171
BcgI	CGANNNNNNTGC	2 cut(s)	137, 171
BciT130I	CCWGG	3 cut(s)	727, 734, 774
BcoDI	GTCTC	1 cut(s)	191
BfmI	CTRYAG	1 cut(s)	336
BfuAI	ACCTGC	1 cut(s)	721
BisI	GCNGC	4 cut(s)	76, 79, 177, 180
BlsI	GCNGC	4 cut(s)	77, 80, 178, 181
Bme1390I	CCNGG	3 cut(s)	727, 734, 774
Bme18I	GGWCC	3 cut(s)	198, 438, 736
BmgT120I	GGNCC	5 cut(s)	4, 174, 198, 438, 736
BmiI	GGNNCC	3 cut(s)	439, 440, 731
BmrFI	CCNGG	3 cut(s)	727, 734, 774
BpiI	GAAGAC	2 cut(s)	458, 496
BpuEI	CTTGAG	1 cut(s)	343
BsaJI	CCNNGG	2 cut(s)	159, 549
BsaXI	ACNNNNNCTCC	2 cut(s)	251, 281
Bse118I	RCCGGY	1 cut(s)	738
Bse1I	ACTGG	2 cut(s)	208, 454
BseBI	CCWGG	3 cut(s)	727, 734, 774
BseDI	CCNNGG	2 cut(s)	159, 549
BseGI	GGATG	1 cut(s)	169
BseMII	CTCAG	1 cut(s)	521
BseNI	ACTGG	2 cut(s)	208, 454
BseRI	GAGGAG	1 cut(s)	9
BsgI	GTGCAG	1 cut(s)	88
Bsh1236I	CGCG	1 cut(s)	610
BshFI	GGCC	5 cut(s)	5, 176, 231, 725, 742
BsiHKAI	GWGCWC	1 cut(s)	171
BsiSI	CCGG	2 cut(s)	374, 739
BslFI	GGGAC	2 cut(s)	326, 451
BsmAI	GTCTC	1 cut(s)	191
BsmFI	GGGAC	2 cut(s)	326, 451
BsnI	GGCC	5 cut(s)	5, 176, 231, 725, 742
Bsp1286I	GDGCHC	1 cut(s)	171
Bsp1407I	TGTACA	1 cut(s)	675
Bsp143I	GATC	4 cut(s)	238, 421, 445, 628
BspACI	CCGC	7 cut(s)	73, 76, 79, 90, 177, 180, 257
BspANI	GGCC	5 cut(s)	5, 176, 231, 725, 742
BspCNI	CTCAG	1 cut(s)	522
BspFNI	CGCG	1 cut(s)	610
BspLI	GGNNCC	3 cut(s)	439, 440, 731
BspMI	ACCTGC	1 cut(s)	721
BsrFI	RCCGGY	1 cut(s)	738
BsrGI	TGTACA	1 cut(s)	675
BsrI	ACTGG	2 cut(s)	208, 454
BssAI	RCCGGY	1 cut(s)	738
BssECI	CCNNGG	2 cut(s)	159, 549
BssMI	GATC	4 cut(s)	238, 421, 445, 628
BssT1I	CCWWGG	1 cut(s)	549
Bst2UI	CCWGG	3 cut(s)	727, 734, 774
Bst4CI	ACNGT	2 cut(s)	340, 672
Bst6I	CTCTTC	2 cut(s)	293, 677
BstAUI	TGTACA	1 cut(s)	675
BstC8I	GCNNGC	3 cut(s)	94, 723, 779
BstDEI	CTNAG	1 cut(s)	530
BstF5I	GGATG	1 cut(s)	169
BstFNI	CGCG	1 cut(s)	610
BstHHI	GCGC	1 cut(s)	610
BstKTI	GATC	4 cut(s)	241, 424, 448, 631
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	4 cut(s)	238, 421, 445, 628
BstMWI	GCNNNNNNNGC	5 cut(s)	102, 506, 515, 587, 722
BstNI	CCWGG	3 cut(s)	727, 734, 774
BstSCI	CCNGG	3 cut(s)	725, 732, 772
BstSFI	CTRYAG	1 cut(s)	336
BstUI	CGCG	1 cut(s)	610
BstV2I	GAAGAC	2 cut(s)	458, 496
BstXI	CCANNNNNNTGG	1 cut(s)	733
BsuRI	GGCC	5 cut(s)	5, 176, 231, 725, 742
BtsCI	GGATG	1 cut(s)	169
BtsIMutI	CAGTG	1 cut(s)	461
BveI	ACCTGC	1 cut(s)	721
Cac8I	GCNNGC	3 cut(s)	94, 723, 779
CfoI	GCGC	1 cut(s)	610
Cfr10I	RCCGGY	1 cut(s)	738
Cfr13I	GGNCC	5 cut(s)	4, 174, 198, 438, 736
Csp6I	GTAC	1 cut(s)	676
CviAII	CATG	5 cut(s)	125, 578, 641, 679, 717
CviQI	GTAC	1 cut(s)	676
DdeI	CTNAG	1 cut(s)	530
DpnI	GATC	4 cut(s)	240, 423, 447, 630
DpnII	GATC	4 cut(s)	238, 421, 445, 628
EaeI	YGGCCR	1 cut(s)	740
Eam1104I	CTCTTC	2 cut(s)	293, 677
EarI	CTCTTC	2 cut(s)	293, 677
EciI	GGCGGA	2 cut(s)	62, 272
Ecl136II	GAGCTC	1 cut(s)	169
Eco130I	CCWWGG	1 cut(s)	549
Eco24I	GRGCYC	1 cut(s)	171
Eco47I	GGWCC	3 cut(s)	198, 438, 736
Eco53kI	GAGCTC	1 cut(s)	169
EcoICRI	GAGCTC	1 cut(s)	169
EcoO109I	RGGNCCY	1 cut(s)	438
EcoRII	CCWGG	3 cut(s)	725, 732, 772
EcoT14I	CCWWGG	1 cut(s)	549
EcoT38I	GRGCYC	1 cut(s)	171
ErhI	CCWWGG	1 cut(s)	549
FaeI	CATG	5 cut(s)	128, 581, 644, 682, 720
FalI	AAGNNNNNCTT	2 cut(s)	104, 136
FaqI	GGGAC	2 cut(s)	326, 451
FatI	CATG	5 cut(s)	124, 577, 640, 678, 716
Fnu4HI	GCNGC	4 cut(s)	76, 79, 177, 180
FokI	GGATG	1 cut(s)	176
FriOI	GRGCYC	1 cut(s)	171
Fsp4HI	GCNGC	4 cut(s)	76, 79, 177, 180
GlaI	GCGC	1 cut(s)	609
GluI	GCNGC	4 cut(s)	76, 79, 177, 180
HaeIII	GGCC	5 cut(s)	5, 176, 231, 725, 742
HapII	CCGG	2 cut(s)	374, 739
HhaI	GCGC	1 cut(s)	610
Hin1II	CATG	5 cut(s)	128, 581, 644, 682, 720
Hin6I	GCGC	1 cut(s)	608
HinP1I	GCGC	1 cut(s)	608
HinfI	GANTC	1 cut(s)	128
HpaII	CCGG	2 cut(s)	374, 739
HphI	GGTGA	1 cut(s)	79
Hpy166II	GTNNAC	2 cut(s)	132, 405
Hpy188I	TCNGA	1 cut(s)	531
Hpy188III	TCNNGA	1 cut(s)	470
Hpy8I	GTNNAC	2 cut(s)	132, 405
HpyAV	CCTTC	5 cut(s)	17, 143, 211, 298, 741
HpyCH4III	ACNGT	2 cut(s)	340, 672
HpyCH4IV	ACGT	2 cut(s)	224, 286
HpyCH4V	TGCA	5 cut(s)	105, 518, 559, 716, 781
HpyF10VI	GCNNNNNNNGC	5 cut(s)	102, 506, 515, 587, 722
HpyF3I	CTNAG	1 cut(s)	530
HpySE526I	ACGT	2 cut(s)	224, 286
Hsp92II	CATG	5 cut(s)	128, 581, 644, 682, 720
HspAI	GCGC	1 cut(s)	608
KflI	GGGWCCC	1 cut(s)	438
Kzo9I	GATC	4 cut(s)	238, 421, 445, 628
LmnI	GCTCC	2 cut(s)	259, 506
MaeII	ACGT	2 cut(s)	224, 286
MaeIII	GTNAC	2 cut(s)	704, 750
MalI	GATC	4 cut(s)	240, 423, 447, 630
MboI	GATC	4 cut(s)	238, 421, 445, 628
MboII	GAAGA	7 cut(s)	6, 310, 431, 458, 498, 501, 694
MhlI	GDGCHC	1 cut(s)	171
MluCI	AATT	1 cut(s)	353
MlyI	GAGTC	1 cut(s)	137
MnlI	CCTC	7 cut(s)	30, 36, 64, 154, 242, 294, 490
MseI	TTAA	1 cut(s)	450
MslI	CAYNNNNRTG	1 cut(s)	564
MspI	CCGG	2 cut(s)	374, 739
MspR9I	CCNGG	3 cut(s)	727, 734, 774
MvaI	CCWGG	3 cut(s)	727, 734, 774
MvnI	CGCG	1 cut(s)	610
MwoI	GCNNNNNNNGC	5 cut(s)	102, 506, 515, 587, 722
NdeII	GATC	4 cut(s)	238, 421, 445, 628
NlaIII	CATG	5 cut(s)	128, 581, 644, 682, 720
NlaIV	GGNNCC	3 cut(s)	439, 440, 731
NmeAIII	GCCGAG	1 cut(s)	184
NmuCI	GTSAC	1 cut(s)	704
PfoI	TCCNGGA	1 cut(s)	732
PkrI	GCNGC	4 cut(s)	77, 80, 178, 181
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
PpuMI	RGGWCCY	1 cut(s)	438
Psp124BI	GAGCTC	1 cut(s)	171
Psp5II	RGGWCCY	1 cut(s)	438
Psp6I	CCWGG	3 cut(s)	725, 732, 772
PspGI	CCWGG	3 cut(s)	725, 732, 772
PspN4I	GGNNCC	3 cut(s)	439, 440, 731
PspPI	GGNCC	5 cut(s)	4, 174, 198, 438, 736
PspPPI	RGGWCCY	1 cut(s)	438
RsaI	GTAC	1 cut(s)	677
RsaNI	GTAC	1 cut(s)	676
RseI	CAYNNNNRTG	1 cut(s)	564
SacI	GAGCTC	1 cut(s)	171
SaqAI	TTAA	1 cut(s)	450
SatI	GCNGC	4 cut(s)	76, 79, 177, 180
Sau3AI	GATC	4 cut(s)	238, 421, 445, 628
Sau96I	GGNCC	5 cut(s)	4, 174, 198, 438, 736
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	3 cut(s)	727, 734, 774
SduI	GDGCHC	1 cut(s)	171
SfcI	CTRYAG	1 cut(s)	336
SinI	GGWCC	3 cut(s)	198, 438, 736
SmiMI	CAYNNNNRTG	1 cut(s)	564
SmlI	CTYRAG	1 cut(s)	358
SmoI	CTYRAG	1 cut(s)	358
Sse9I	AATT	1 cut(s)	353
SsiI	CCGC	7 cut(s)	73, 76, 79, 90, 177, 180, 257
SstI	GAGCTC	1 cut(s)	171
StyD4I	CCNGG	3 cut(s)	725, 732, 772
StyI	CCWWGG	1 cut(s)	549
TaaI	ACNGT	2 cut(s)	340, 672
TaiI	ACGT	2 cut(s)	227, 289
TaqI	TCGA	1 cut(s)	424
TaqII	GACCGA	1 cut(s)	186
TasI	AATT	1 cut(s)	353
TatI	WGTACW	1 cut(s)	675
TauI	GCSGC	4 cut(s)	78, 81, 179, 182
Tru1I	TTAA	1 cut(s)	450
Tru9I	TTAA	1 cut(s)	450
TscAI	CASTG	1 cut(s)	461
TseFI	GTSAC	1 cut(s)	704
Tsp45I	GTSAC	1 cut(s)	704
TspDTI	ATGAA	4 cut(s)	357, 629, 672, 695
TspGWI	ACGGA	1 cut(s)	179
TspRI	CASTG	1 cut(s)	461
VpaK11BI	GGWCC	3 cut(s)	198, 438, 736

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.