Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0003174

Physical Location & Seq

Genomic Coordinates Forward (+)

42546503 .. 42551635

Gene Structure 5133 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG200600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGAACGAAACCGAACCCCCGCCGCAGCAGAGCCGAACAAGAACAAGAGCGATCCCGAAAAGGTGAAGGTAATCGAATGGGAGGAATTCGAGCAGGAGCTTGCCAGGTTGTGGAGTCTGTCTTCTGCGCTTAAGGAAGCTCAGGAGAAGAAGCAGAGTCTTAAGCAGAAGCTCGACTCTCTCATTGAGGTTGAAGCTGAGTCATTGAATCGATCAAATGAGCTTGAGGAGATGCAGCAGAAACTGGAGGCGAGAAAAGTGGTAATGGGAAACATGTCTATGCATTCTATGGTTGCCGTGGAGGATACTAAAAAGAACGAGGGACAGCTTAGTACAGAACTAAGGTCGCTATTGGTTGCTGGGACAGCTCTATCTGCAGCTAGGAAGAAACTGGAGGAGTCAAATCAGCTACTTTCCAGAGACAATGGATATATTCGTCTTAAAAACTTGCAAAAGATGCTAAGAAGAAGACAACAAAATATGATAACACAAGTTTCATTGCTCTATCCTGTAAAGTTCACTATGGGTCCTGCACACGAACAGGAGCTTGAATCATTTCCTAACACTAGTAGATCAGGTAATTCTGCTCGATTTAAACCTGCAAACCAGGGAACATTGACAATTTTAGGTTTGCATTTGACTATGCTGCCTTTTAAAATGACAAGTTTCTTCACCGACAAGAAAGAGGTTCAGAAGTCTGCAACAGCCCTGGGATACGTCGGTCATGTGAGTAGTACTTTGTCTTTGTTTGGTATATATTGCTTTATACATGCACATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04140 map04140

Pfam Domains

Protein Families

Atg14

Protein Analysis

259

Amino Acids

29.37

Weight (kDa)

9.28

Isoelectric Point (pI)

52.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32760 AT2G32760 AT2G32760
fragaria_vesca	FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790
malus_domestica	MD00G1113200.v1.1 MD04G1010600.v1.1
prunus_persica	Prupe.1G010300_v2.0.a1 Prupe.1G010300_v2.0.a1 Prupe.1G010300_v2.0.a1
pyrus_communis	pycom04g00870 pycom420g01290
rosa_chinensis	RchiOBHm_Chr4g0414711
rosa_laevigata	RLG00000008122
rosa_multiflora	Rmu_sc0001192.1_g000027 Rmu_sc0010606.1_g000008
rosa_roxburghii	Rroxscaffold_5G00358520
rosa_rugosa	Rorug04G0129800 Rorug04G0129900 Rorug04G0130000 Rorug04G0130100 Rorug04G0130200 Rorug04G0130200 Rorug04G0130200
rosa_samantha	Rh4AG188300 Rh4BG187300 Rh4CG200600 Rh4DG187000
rosa_wichuraiana	Rw4G016070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	607
AccB7I	CCANNNNNTGG	1 cut(s)	111
AciI	CCGC	2 cut(s)	21, 24
AclWI	GGATC	1 cut(s)	47
AcsI	RAATTY	1 cut(s)	86
AfaI	GTAC	2 cut(s)	334, 736
AfiI	CCNNNNNNNGG	1 cut(s)	111
AflII	CTTAAG	2 cut(s)	131, 161
AflIII	ACRYGT	1 cut(s)	273
AgsI	TTSAA	3 cut(s)	194, 208, 551
AhlI	ACTAGT	1 cut(s)	566
AjnI	CCWGG	3 cut(s)	104, 606, 708
Alw26I	GTCTC	1 cut(s)	414
AlwI	GGATC	1 cut(s)	47
AlwNI	CAGNNNCTG	1 cut(s)	244
ApeKI	GCWGC	4 cut(s)	26, 235, 377, 646
ApoI	RAATTY	1 cut(s)	86
Asp700I	GAANNNNTTC	1 cut(s)	555
AspLEI	GCGC	1 cut(s)	130
AspS9I	GGNCC	1 cut(s)	527
AsuHPI	GGTGA	2 cut(s)	76, 664
AvaII	GGWCC	1 cut(s)	527
BaeI	ACNNNNGTAYC	2 cut(s)	706, 739
BbsI	GAAGAC	2 cut(s)	114, 475
BbvI	GCAGC	4 cut(s)	38, 247, 389, 633
BceAI	ACGGC	1 cut(s)	281
BciT130I	CCWGG	3 cut(s)	106, 608, 710
BciVI	GTATCC	2 cut(s)	298, 707
BcoDI	GTCTC	1 cut(s)	414
BcuI	ACTAGT	1 cut(s)	566
BfaI	CTAG	2 cut(s)	381, 567
BfmI	CTRYAG	1 cut(s)	375
BfrI	CTTAAG	2 cut(s)	131, 161
BfuAI	ACCTGC	1 cut(s)	607
BfuI	GTATCC	2 cut(s)	298, 707
BisI	GCNGC	5 cut(s)	24, 27, 236, 378, 647
BlsI	GCNGC	5 cut(s)	25, 28, 237, 379, 648
BmcAI	AGTACT	1 cut(s)	736
Bme1390I	CCNGG	3 cut(s)	106, 608, 710
Bme18I	GGWCC	1 cut(s)	527
BmgT120I	GGNCC	1 cut(s)	527
BmiI	GGNNCC	1 cut(s)	528
BmrFI	CCNGG	3 cut(s)	106, 608, 710
BmsI	GCATC	2 cut(s)	222, 447
BpiI	GAAGAC	2 cut(s)	114, 475
BpmI	CTGGAG	2 cut(s)	266, 413
Bpu10I	CCTNAGC	1 cut(s)	141
BpuEI	CTTGAG	1 cut(s)	245
Bsa29I	ATCGAT	1 cut(s)	211
BsaJI	CCNNGG	4 cut(s)	297, 607, 708, 709
Bsc4I	CCNNNNNNNGG	1 cut(s)	111
Bse1I	ACTGG	2 cut(s)	249, 396
Bse3DI	GCAATG	1 cut(s)	497
BseBI	CCWGG	3 cut(s)	106, 608, 710
BseCI	ATCGAT	1 cut(s)	211
BseDI	CCNNGG	4 cut(s)	297, 607, 708, 709
BseLI	CCNNNNNNNGG	1 cut(s)	111
BseMI	GCAATG	1 cut(s)	497
BseMII	CTCAG	2 cut(s)	155, 189
BseNI	ACTGG	2 cut(s)	249, 396
BseRI	GAGGAG	2 cut(s)	242, 410
BseXI	GCAGC	4 cut(s)	38, 247, 389, 633
BseYI	CCCAGC	1 cut(s)	359
BsgI	GTGCAG	1 cut(s)	516
BshVI	ATCGAT	1 cut(s)	211
BslFI	GGGAC	2 cut(s)	336, 376
BslI	CCNNNNNNNGG	1 cut(s)	111
BsmAI	GTCTC	1 cut(s)	414
BsmFI	GGGAC	2 cut(s)	336, 376
BsmI	GAATGC	1 cut(s)	283
Bsp143I	GATC	3 cut(s)	52, 212, 572
BspACI	CCGC	2 cut(s)	21, 24
BspCNI	CTCAG	2 cut(s)	154, 190
BspDI	ATCGAT	1 cut(s)	211
BspLI	GGNNCC	1 cut(s)	528
BspMAI	CTGCAG	1 cut(s)	379
BspMI	ACCTGC	1 cut(s)	607
BspPI	GGATC	1 cut(s)	47
BspTI	CTTAAG	2 cut(s)	131, 161
BsrDI	GCAATG	1 cut(s)	497
BsrI	ACTGG	2 cut(s)	249, 396
BssECI	CCNNGG	4 cut(s)	297, 607, 708, 709
BssMI	GATC	3 cut(s)	52, 212, 572
Bst2UI	CCWGG	3 cut(s)	106, 608, 710
BstAFI	CTTAAG	2 cut(s)	131, 161
BstAPI	GCANNNNNTGC	1 cut(s)	457
BstC8I	GCNNGC	1 cut(s)	102
BstDEI	CTNAG	5 cut(s)	141, 198, 329, 341, 461
BstDSI	CCRYGG	1 cut(s)	297
BstHHI	GCGC	1 cut(s)	130
BstKTI	GATC	3 cut(s)	55, 215, 575
BstMAI	GTCTC	1 cut(s)	414
BstMBI	GATC	3 cut(s)	52, 212, 572
BstMWI	GCNNNNNNNGC	3 cut(s)	365, 374, 457
BstNI	CCWGG	3 cut(s)	106, 608, 710
BstNSI	RCATGY	2 cut(s)	277, 773
BstSCI	CCNGG	3 cut(s)	104, 606, 708
BstSFI	CTRYAG	1 cut(s)	375
BstV1I	GCAGC	4 cut(s)	38, 247, 389, 633
BstV2I	GAAGAC	2 cut(s)	114, 475
Bsu15I	ATCGAT	1 cut(s)	211
BsuI	GTATCC	2 cut(s)	298, 707
BsuTUI	ATCGAT	1 cut(s)	211
BtgI	CCRYGG	1 cut(s)	297
BveI	ACCTGC	1 cut(s)	607
Cac8I	GCNNGC	1 cut(s)	102
CaiI	CAGNNNCTG	1 cut(s)	244
CfoI	GCGC	1 cut(s)	130
Cfr13I	GGNCC	1 cut(s)	527
ClaI	ATCGAT	1 cut(s)	211
Csp6I	GTAC	2 cut(s)	333, 735
CviAII	CATG	3 cut(s)	274, 725, 770
CviQI	GTAC	2 cut(s)	333, 735
DdeI	CTNAG	5 cut(s)	141, 198, 329, 341, 461
DpnI	GATC	3 cut(s)	54, 214, 574
DpnII	GATC	3 cut(s)	52, 212, 572
DraI	TTTAAA	2 cut(s)	595, 655
Eco47I	GGWCC	1 cut(s)	527
EcoO109I	RGGNCCY	1 cut(s)	527
EcoRI	GAATTC	1 cut(s)	86
EcoRII	CCWGG	3 cut(s)	104, 606, 708
EcoT22I	ATGCAT	1 cut(s)	285
FaeI	CATG	3 cut(s)	277, 728, 773
FaqI	GGGAC	2 cut(s)	336, 376
FatI	CATG	3 cut(s)	273, 724, 769
FauI	CCCGC	1 cut(s)	28
Fnu4HI	GCNGC	5 cut(s)	24, 27, 236, 378, 647
Fsp4HI	GCNGC	5 cut(s)	24, 27, 236, 378, 647
FspBI	CTAG	2 cut(s)	381, 567
GlaI	GCGC	1 cut(s)	129
GluI	GCNGC	5 cut(s)	24, 27, 236, 378, 647
GsaI	CCCAGC	1 cut(s)	363
GsuI	CTGGAG	2 cut(s)	266, 413
HhaI	GCGC	1 cut(s)	130
Hin1II	CATG	3 cut(s)	277, 728, 773
Hin6I	GCGC	1 cut(s)	128
HinP1I	GCGC	1 cut(s)	128
HinfI	GANTC	7 cut(s)	115, 157, 176, 200, 208, 398, 551
HphI	GGTGA	2 cut(s)	76, 664
Hpy166II	GTNNAC	1 cut(s)	519
Hpy188I	TCNGA	1 cut(s)	693
Hpy188III	TCNNGA	3 cut(s)	56, 143, 417
Hpy8I	GTNNAC	1 cut(s)	519
Hpy99I	CGWCG	1 cut(s)	722
HpyAV	CCTTC	1 cut(s)	61
HpyCH4IV	ACGT	1 cut(s)	717
HpyCH4V	TGCA	9 cut(s)	235, 283, 377, 451, 533, 602, 634, 701, 773
HpyF10VI	GCNNNNNNNGC	3 cut(s)	365, 374, 457
HpyF3I	CTNAG	5 cut(s)	141, 198, 329, 341, 461
HpySE526I	ACGT	1 cut(s)	717
Hsp92II	CATG	3 cut(s)	277, 728, 773
HspAI	GCGC	1 cut(s)	128
Kzo9I	GATC	3 cut(s)	52, 212, 572
LmnI	GCTCC	2 cut(s)	97, 544
Lsp1109I	GCAGC	4 cut(s)	38, 247, 389, 633
LweI	GCATC	2 cut(s)	222, 447
MaeI	CTAG	2 cut(s)	381, 567
MaeII	ACGT	1 cut(s)	717
MalI	GATC	3 cut(s)	54, 214, 574
MboI	GATC	3 cut(s)	52, 212, 572
MboII	GAAGA	6 cut(s)	114, 160, 397, 477, 480, 661
MluCI	AATT	3 cut(s)	86, 580, 621
MlyI	GAGTC	5 cut(s)	124, 166, 170, 209, 407
MnlI	CCTC	8 cut(s)	76, 181, 220, 241, 295, 313, 388, 679
Mph1103I	ATGCAT	1 cut(s)	285
MroXI	GAANNNNTTC	1 cut(s)	555
MseI	TTAA	5 cut(s)	132, 162, 441, 594, 654
MslI	CAYNNNNRTG	1 cut(s)	278
MspCI	CTTAAG	2 cut(s)	131, 161
MspR9I	CCNGG	3 cut(s)	106, 608, 710
Mva1269I	GAATGC	1 cut(s)	283
MvaI	CCWGG	3 cut(s)	106, 608, 710
MwoI	GCNNNNNNNGC	3 cut(s)	365, 374, 457
NdeII	GATC	3 cut(s)	52, 212, 572
NlaIII	CATG	3 cut(s)	277, 728, 773
NlaIV	GGNNCC	1 cut(s)	528
NsiI	ATGCAT	1 cut(s)	285
NspI	RCATGY	2 cut(s)	277, 773
PasI	CCCWGGG	1 cut(s)	709
PciI	ACATGT	1 cut(s)	273
PctI	GAATGC	1 cut(s)	283
PdmI	GAANNNNTTC	1 cut(s)	555
PfeI	GAWTC	2 cut(s)	208, 551
PflMI	CCANNNNNTGG	1 cut(s)	111
PkrI	GCNGC	5 cut(s)	25, 28, 237, 379, 648
PleI	GAGTC	5 cut(s)	123, 165, 170, 208, 406
PpsI	GAGTC	5 cut(s)	123, 165, 170, 208, 406
PpuMI	RGGWCCY	1 cut(s)	527
PscI	ACATGT	1 cut(s)	273
Psp5II	RGGWCCY	1 cut(s)	527
Psp6I	CCWGG	3 cut(s)	104, 606, 708
PspFI	CCCAGC	1 cut(s)	359
PspGI	CCWGG	3 cut(s)	104, 606, 708
PspN4I	GGNNCC	1 cut(s)	528
PspPI	GGNCC	1 cut(s)	527
PspPPI	RGGWCCY	1 cut(s)	527
PstI	CTGCAG	1 cut(s)	379
PstNI	CAGNNNCTG	1 cut(s)	244
RsaI	GTAC	2 cut(s)	334, 736
RsaNI	GTAC	2 cut(s)	333, 735
RseI	CAYNNNNRTG	1 cut(s)	278
SaqAI	TTAA	5 cut(s)	132, 162, 441, 594, 654
SatI	GCNGC	5 cut(s)	24, 27, 236, 378, 647
Sau3AI	GATC	3 cut(s)	52, 212, 572
Sau96I	GGNCC	1 cut(s)	527
ScaI	AGTACT	1 cut(s)	736
SchI	GAGTC	5 cut(s)	124, 166, 170, 209, 407
ScrFI	CCNGG	3 cut(s)	106, 608, 710
SfaNI	GCATC	2 cut(s)	222, 447
SfcI	CTRYAG	1 cut(s)	375
SinI	GGWCC	1 cut(s)	527
SmiMI	CAYNNNNRTG	1 cut(s)	278
SmlI	CTYRAG	3 cut(s)	131, 161, 224
SmoI	CTYRAG	3 cut(s)	131, 161, 224
SpeI	ACTAGT	1 cut(s)	566
Sse9I	AATT	3 cut(s)	86, 580, 621
SsiI	CCGC	2 cut(s)	21, 24
SspMI	CTAG	2 cut(s)	381, 567
StyD4I	CCNGG	3 cut(s)	104, 606, 708
TaiI	ACGT	1 cut(s)	720
TaqI	TCGA	5 cut(s)	75, 90, 174, 211, 589
TaqII	GACCGA	1 cut(s)	710
TasI	AATT	3 cut(s)	86, 580, 621
TatI	WGTACW	2 cut(s)	332, 734
TauI	GCSGC	1 cut(s)	26
TfiI	GAWTC	2 cut(s)	208, 551
Tru1I	TTAA	5 cut(s)	132, 162, 441, 594, 654
Tru9I	TTAA	5 cut(s)	132, 162, 441, 594, 654
TseI	GCWGC	4 cut(s)	26, 235, 377, 646
TspDTI	ATGAA	1 cut(s)	486
Van91I	CCANNNNNTGG	1 cut(s)	111
Vha464I	CTTAAG	2 cut(s)	131, 161
VpaK11BI	GGWCC	1 cut(s)	527
XapI	RAATTY	1 cut(s)	86
XceI	RCATGY	2 cut(s)	277, 773
XmnI	GAANNNNTTC	1 cut(s)	555
XspI	CTAG	2 cut(s)	381, 567
ZrmI	AGTACT	1 cut(s)	736
Zsp2I	ATGCAT	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.