Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_420

Orthogroup ID

OG0003174

Physical Location & Seq

Genomic Coordinates Forward (+)

1828851 .. 1832506

Gene Structure 3656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom420g01290.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGCAGCAGAAACTGGAGGCCAGAAAAATGGTGATGGGAAACATGTCAAGGTATTCTATGCTTGCTGTGGAGGATACAAAAAAGAAAGAGGAGCAACTTAGTATAGAGCTTAGGTCACTTTTGGTTGCTGGGACAGCTCTATCTGTTGCTAGGAAGCGGTTGGAGGAGTCAAATCAGCTACTATCCAGTGACAAGGGGTATGTTAATCTTAAAAACTTGCAAAAGATGCTAAGAAGGCGACAACAACATATGATATCACAAGTTTCATTGCTATATCCTGTAAAGTTCACTATGGGTCCTGCACAAGAACAGGAACTTGAATCATTTCCTAACACTAGTAGATCAGGTAATTCTGCTCGATTTAAACCTGCAAATCAAGGAACATTGACAATTTTAGGTCTCCATTTGACAATGCTGCCTTTTAAAATGATGAGTTTTTTCACTGACAAAAAGGAGGTTCAGGGGTCTGCAACAGCCCTTGGATATGTCAGTCATGCTGTCTTACTTATAGCTTCGTACTTAAAAGTTCCATTGCGTTATCCATTGCGTTTGGGTGGTTCCCATTCCTATATTATTGATTATGGACCATCCGTAGAGCCTACTTCATCTGATGTGTCATCACATACAGTGGTTTCAACGGATGTGAAGCATGTGGAGTTCCCTCTTTTTCTAGATGGCCAAGACACAACAAGAGCCGCATATGCTCTATTCTTACTAAACAAGGATTTAGAGCAGCTTTTGAATTACATTGGCGTTAAGAGCTTAGGACCGCGTCATGTCCTAGCCAATTTGAAGGAGCTTGTAAGGACAATTCAGTCTGTAGATTATATAGATACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04140 map04140

Pfam Domains

Protein Families

Atg14

Protein Analysis

280

Amino Acids

31.33

Weight (kDa)

9.48

Isoelectric Point (pI)

47.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32760 AT2G32760 AT2G32760
fragaria_vesca	FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790
malus_domestica	MD00G1113200.v1.1 MD04G1010600.v1.1
prunus_persica	Prupe.1G010300_v2.0.a1 Prupe.1G010300_v2.0.a1 Prupe.1G010300_v2.0.a1
pyrus_communis	pycom04g00870 pycom420g01290
rosa_chinensis	RchiOBHm_Chr4g0414711
rosa_laevigata	RLG00000008122
rosa_multiflora	Rmu_sc0001192.1_g000027 Rmu_sc0010606.1_g000008
rosa_roxburghii	Rroxscaffold_5G00358520
rosa_rugosa	Rorug04G0129800 Rorug04G0129900 Rorug04G0130000 Rorug04G0130100 Rorug04G0130200 Rorug04G0130200 Rorug04G0130200
rosa_samantha	Rh4AG188300 Rh4BG187300 Rh4CG200600 Rh4DG187000
rosa_wichuraiana	Rw4G016070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	814
Acc36I	ACCTGC	1 cut(s)	376
AccII	CGCG	1 cut(s)	772
AciI	CCGC	3 cut(s)	157, 696, 770
AcoI	YGGCCR	1 cut(s)	676
AfaI	GTAC	1 cut(s)	518
AflIII	ACRYGT	1 cut(s)	42
AgsI	TTSAA	4 cut(s)	320, 636, 742, 793
AhlI	ACTAGT	1 cut(s)	335
AluBI	AGCT	7 cut(s)	109, 137, 178, 512, 736, 762, 799
AluI	AGCT	7 cut(s)	109, 137, 178, 512, 736, 762, 799
Alw26I	GTCTC	1 cut(s)	404
AlwNI	CAGNNNCTG	1 cut(s)	13
AoxI	GGCC	2 cut(s)	18, 676
ApeKI	GCWGC	3 cut(s)	4, 415, 733
Asp700I	GAANNNNTTC	1 cut(s)	324
AspS9I	GGNCC	3 cut(s)	296, 584, 767
AsuHPI	GGTGA	1 cut(s)	43
AvaII	GGWCC	3 cut(s)	296, 584, 767
BalI	TGGCCA	1 cut(s)	678
BbvI	GCAGC	3 cut(s)	16, 402, 745
BccI	CCATC	3 cut(s)	28, 595, 668
BciVI	GTATCC	1 cut(s)	67
BcoDI	GTCTC	1 cut(s)	404
BcuI	ACTAGT	1 cut(s)	335
BfaI	CTAG	4 cut(s)	150, 336, 671, 782
BfmI	CTRYAG	1 cut(s)	819
BfuAI	ACCTGC	1 cut(s)	376
BfuI	GTATCC	1 cut(s)	67
BisI	GCNGC	4 cut(s)	5, 416, 696, 734
BlsI	GCNGC	4 cut(s)	6, 417, 697, 735
Bme18I	GGWCC	3 cut(s)	296, 584, 767
BmgT120I	GGNCC	3 cut(s)	296, 584, 767
BmiI	GGNNCC	2 cut(s)	297, 559
BmsI	GCATC	1 cut(s)	216
BpmI	CTGGAG	1 cut(s)	35
Bpu10I	CCTNAGC	2 cut(s)	110, 763
BsaAI	YACGTR	1 cut(s)	837
BsaI	GGTCTC	1 cut(s)	404
BsaJI	CCNNGG	1 cut(s)	478
Bse1I	ACTGG	2 cut(s)	18, 186
Bse3DI	GCAATG	3 cut(s)	266, 530, 542
BseDI	CCNNGG	1 cut(s)	478
BseGI	GGATG	2 cut(s)	587, 646
BseMI	GCAATG	3 cut(s)	266, 530, 542
BseNI	ACTGG	2 cut(s)	18, 186
BseRI	GAGGAG	2 cut(s)	104, 179
BseXI	GCAGC	3 cut(s)	16, 402, 745
BseYI	CCCAGC	1 cut(s)	128
BsgI	GTGCAG	1 cut(s)	285
Bsh1236I	CGCG	1 cut(s)	772
BshFI	GGCC	2 cut(s)	20, 678
BslFI	GGGAC	1 cut(s)	145
BsmAI	GTCTC	1 cut(s)	404
BsmFI	GGGAC	1 cut(s)	145
BsnI	GGCC	2 cut(s)	20, 678
Bso31I	GGTCTC	1 cut(s)	404
Bsp143I	GATC	1 cut(s)	341
BspACI	CCGC	3 cut(s)	157, 696, 770
BspANI	GGCC	2 cut(s)	20, 678
BspFNI	CGCG	1 cut(s)	772
BspLI	GGNNCC	2 cut(s)	297, 559
BspMI	ACCTGC	1 cut(s)	376
BspTNI	GGTCTC	1 cut(s)	404
BsrDI	GCAATG	3 cut(s)	266, 530, 542
BsrI	ACTGG	2 cut(s)	18, 186
BssECI	CCNNGG	1 cut(s)	478
BssMI	GATC	1 cut(s)	341
BssT1I	CCWWGG	1 cut(s)	478
Bst4CI	ACNGT	1 cut(s)	628
BstAPI	GCANNNNNTGC	1 cut(s)	226
BstBAI	YACGTR	1 cut(s)	837
BstC8I	GCNNGC	1 cut(s)	63
BstDEI	CTNAG	4 cut(s)	98, 110, 230, 763
BstF5I	GGATG	2 cut(s)	587, 646
BstFNI	CGCG	1 cut(s)	772
BstKTI	GATC	1 cut(s)	344
BstMAI	GTCTC	1 cut(s)	404
BstMBI	GATC	1 cut(s)	341
BstMWI	GCNNNNNNNGC	5 cut(s)	134, 226, 235, 701, 759
BstNSI	RCATGY	2 cut(s)	46, 653
BstSFI	CTRYAG	1 cut(s)	819
BstUI	CGCG	1 cut(s)	772
BstV1I	GCAGC	3 cut(s)	16, 402, 745
BstXI	CCANNNNNNTGG	1 cut(s)	28
BsuI	GTATCC	1 cut(s)	67
BsuRI	GGCC	2 cut(s)	20, 678
BtsCI	GGATG	2 cut(s)	587, 646
BtsIMutI	CAGTG	3 cut(s)	193, 441, 633
BveI	ACCTGC	1 cut(s)	376
Cac8I	GCNNGC	1 cut(s)	63
CaiI	CAGNNNCTG	1 cut(s)	13
Cfr13I	GGNCC	3 cut(s)	296, 584, 767
CseI	GACGC	1 cut(s)	761
Csp6I	GTAC	1 cut(s)	517
CviAII	CATG	4 cut(s)	43, 494, 650, 776
CviQI	GTAC	1 cut(s)	517
DdeI	CTNAG	4 cut(s)	98, 110, 230, 763
DpnI	GATC	1 cut(s)	343
DpnII	GATC	1 cut(s)	341
DraI	TTTAAA	2 cut(s)	364, 424
DrdI	GACNNNNNNGTC	1 cut(s)	814
DseDI	GACNNNNNNGTC	1 cut(s)	814
EaeI	YGGCCR	1 cut(s)	676
Eco130I	CCWWGG	1 cut(s)	478
Eco31I	GGTCTC	1 cut(s)	404
Eco32I	GATATC	1 cut(s)	255
Eco47I	GGWCC	3 cut(s)	296, 584, 767
EcoO109I	RGGNCCY	1 cut(s)	296
EcoRV	GATATC	1 cut(s)	255
EcoT14I	CCWWGG	1 cut(s)	478
ErhI	CCWWGG	1 cut(s)	478
FaeI	CATG	4 cut(s)	46, 497, 653, 779
FaqI	GGGAC	1 cut(s)	145
FatI	CATG	4 cut(s)	42, 493, 649, 775
FauNDI	CATATG	2 cut(s)	249, 700
Fnu4HI	GCNGC	4 cut(s)	5, 416, 696, 734
FokI	GGATG	2 cut(s)	574, 653
Fsp4HI	GCNGC	4 cut(s)	5, 416, 696, 734
FspBI	CTAG	4 cut(s)	150, 336, 671, 782
GluI	GCNGC	4 cut(s)	5, 416, 696, 734
GsaI	CCCAGC	1 cut(s)	132
GsuI	CTGGAG	1 cut(s)	35
HaeIII	GGCC	2 cut(s)	20, 678
HgaI	GACGC	1 cut(s)	761
Hin1II	CATG	4 cut(s)	46, 497, 653, 779
HinfI	GANTC	2 cut(s)	167, 320
HphI	GGTGA	1 cut(s)	43
Hpy166II	GTNNAC	1 cut(s)	288
Hpy188I	TCNGA	1 cut(s)	610
Hpy188III	TCNNGA	1 cut(s)	671
Hpy8I	GTNNAC	1 cut(s)	288
HpyAV	CCTTC	2 cut(s)	228, 787
HpyCH4III	ACNGT	1 cut(s)	628
HpyCH4IV	ACGT	1 cut(s)	836
HpyCH4V	TGCA	5 cut(s)	4, 220, 302, 371, 470
HpyF10VI	GCNNNNNNNGC	5 cut(s)	134, 226, 235, 701, 759
HpyF3I	CTNAG	4 cut(s)	98, 110, 230, 763
HpySE526I	ACGT	1 cut(s)	836
Hsp92II	CATG	4 cut(s)	46, 497, 653, 779
Kzo9I	GATC	1 cut(s)	341
LmnI	GCTCC	2 cut(s)	91, 796
LpnPI	CCDG	9 cut(s)	34, 114, 199, 291, 296, 312, 330, 381, 446
Lsp1109I	GCAGC	3 cut(s)	16, 402, 745
LweI	GCATC	1 cut(s)	216
MaeI	CTAG	4 cut(s)	150, 336, 671, 782
MaeII	ACGT	1 cut(s)	836
MaeIII	GTNAC	2 cut(s)	114, 188
MalI	GATC	1 cut(s)	343
MboI	GATC	1 cut(s)	341
MlsI	TGGCCA	1 cut(s)	678
MluCI	AATT	5 cut(s)	349, 390, 742, 787, 810
MluNI	TGGCCA	1 cut(s)	678
MlyI	GAGTC	1 cut(s)	176
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	6 cut(s)	10, 64, 82, 157, 448, 672
Mox20I	TGGCCA	1 cut(s)	678
MroXI	GAANNNNTTC	1 cut(s)	324
MscI	TGGCCA	1 cut(s)	678
MseI	TTAA	6 cut(s)	204, 210, 363, 423, 521, 756
Msp20I	TGGCCA	1 cut(s)	678
MvnI	CGCG	1 cut(s)	772
MwoI	GCNNNNNNNGC	5 cut(s)	134, 226, 235, 701, 759
NdeI	CATATG	2 cut(s)	249, 700
NdeII	GATC	1 cut(s)	341
NlaIII	CATG	4 cut(s)	46, 497, 653, 779
NlaIV	GGNNCC	2 cut(s)	297, 559
NmuCI	GTSAC	2 cut(s)	114, 188
NspI	RCATGY	2 cut(s)	46, 653
PciI	ACATGT	1 cut(s)	42
PdmI	GAANNNNTTC	1 cut(s)	324
PfeI	GAWTC	1 cut(s)	320
PflFI	GACNNNGTC	1 cut(s)	771
PkrI	GCNGC	4 cut(s)	6, 417, 697, 735
PleI	GAGTC	1 cut(s)	175
PpsI	GAGTC	1 cut(s)	175
Ppu21I	YACGTR	1 cut(s)	837
PpuMI	RGGWCCY	1 cut(s)	296
PscI	ACATGT	1 cut(s)	42
Psp5II	RGGWCCY	1 cut(s)	296
PspFI	CCCAGC	1 cut(s)	128
PspN4I	GGNNCC	2 cut(s)	297, 559
PspPI	GGNCC	3 cut(s)	296, 584, 767
PspPPI	RGGWCCY	1 cut(s)	296
PstNI	CAGNNNCTG	1 cut(s)	13
PsyI	GACNNNGTC	1 cut(s)	771
RsaI	GTAC	1 cut(s)	518
RsaNI	GTAC	1 cut(s)	517
SaqAI	TTAA	6 cut(s)	204, 210, 363, 423, 521, 756
SatI	GCNGC	4 cut(s)	5, 416, 696, 734
Sau3AI	GATC	1 cut(s)	341
Sau96I	GGNCC	3 cut(s)	296, 584, 767
SchI	GAGTC	1 cut(s)	176
SfaNI	GCATC	1 cut(s)	216
SfcI	CTRYAG	1 cut(s)	819
SinI	GGWCC	3 cut(s)	296, 584, 767
SpeI	ACTAGT	1 cut(s)	335
Sse9I	AATT	5 cut(s)	349, 390, 742, 787, 810
SsiI	CCGC	3 cut(s)	157, 696, 770
SspMI	CTAG	4 cut(s)	150, 336, 671, 782
StyI	CCWWGG	1 cut(s)	478
TaaI	ACNGT	1 cut(s)	628
TaiI	ACGT	1 cut(s)	839
TaqI	TCGA	1 cut(s)	358
TasI	AATT	5 cut(s)	349, 390, 742, 787, 810
TauI	GCSGC	1 cut(s)	698
TfiI	GAWTC	1 cut(s)	320
Tru1I	TTAA	6 cut(s)	204, 210, 363, 423, 521, 756
Tru9I	TTAA	6 cut(s)	204, 210, 363, 423, 521, 756
TscAI	CASTG	3 cut(s)	193, 448, 633
TseFI	GTSAC	2 cut(s)	114, 188
TseI	GCWGC	3 cut(s)	4, 415, 733
Tsp45I	GTSAC	2 cut(s)	114, 188
TspDTI	ATGAA	2 cut(s)	255, 594
TspGWI	ACGGA	2 cut(s)	580, 653
TspRI	CASTG	3 cut(s)	193, 448, 633
Tth111I	GACNNNGTC	1 cut(s)	771
VpaK11BI	GGWCC	3 cut(s)	296, 584, 767
XbaI	TCTAGA	1 cut(s)	670
XceI	RCATGY	2 cut(s)	46, 653
XmnI	GAANNNNTTC	1 cut(s)	324
XspI	CTAG	4 cut(s)	150, 336, 671, 782

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.