Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0003174

Physical Location & Seq

Genomic Coordinates Reverse (-)

23929425 .. 23933997

Gene Structure 4573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1113200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGAACGAGATCGAGCCCAGCCTGCAGAGCCGAAGAAGAGCGATGTCGAAAATGTGAAGGTGATCGAATGGGAGGAATTCGAGCAAGAGATTGTAAGGTTATGGAGTCTTTCTTCTGCTCTCAGCGAAGCTCAGGAGAAGAAGCAGAGTATTCAGCGGAATCTCGAGTCTCTCATTGAGGTTGAAGCTGAGTCATTGAGACGCTCAAATGAGCTTGAGGAGATGCAGCTGAAACTGGAGGCCAGAAAAATGGTGATGGGAAACATGTCAAGGCATTCTATGCTTGCTGTGGAGGATACAAAAAAGAAAGAGGAGCAACTTAGTATAGAGCTTAGGTCACTTTTGGTTGCTGGGACAGCTCTATCTGTTGCTAGGAAGCGGTTGGAGGAGTCAAATCAGCTACCATCCAGTGACAAGGGGTATGTTCATCTTAAAAACTTGCAAAAGATGCTAAGAAGGCGACAACAGCATATGATATCACAAGTTTCATTGCTATATCCTGTAAAGTTCACTATGGGTCCTGCACAAGAACAGGAACTTGAATCATTTCCTAACACTAGTAGATCAGGTAATTCTGCTCGATTTAAACCTGCAAATCAAGGAACATTGACAATTTTAGGTCTCCATTTGACAATGCTGCCTTTTAAAATGATGAGTTTTTTCACTGACAAAAAGGAGGTTCAGAGGTCTGCAACAGCCCTGGGATATGTCGGCCATGCTGTCTTACTTATAGCTTCATACTTAAAAGTTCCATTGCGTTATCCATTGCGTTTGGGTGGTTCCCATTCCTATATTATTGATTATGGACCATCCGTGGAGCCTACTTCATCTGATGTGTCGTCACATACAGTGGTTTCAACGGATGTGAAGCATGTGGAGTTCCCTCTCTTTCTAGATGGCCAAGACACAACAAGAGCCGCATATGCTCTATTCTTACTAAACAAGGATTTGGAGCAGCTTTTGAATTACATTGGCGTTAAGAGCTTAGGACCGCGCCATGTCCTAGCCAATTTGAAGGAGCTTGTAAGGACAATTCAGTCTGTAGATTATATATATACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04140 map04140

Pfam Domains

Protein Families

Atg14

Protein Analysis

354

Amino Acids

40.12

Weight (kDa)

8.49

Isoelectric Point (pI)

57.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32760 AT2G32760 AT2G32760
fragaria_vesca	FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790
malus_domestica	MD00G1113200.v1.1 MD04G1010600.v1.1
prunus_persica	Prupe.1G010300_v2.0.a1 Prupe.1G010300_v2.0.a1 Prupe.1G010300_v2.0.a1
pyrus_communis	pycom04g00870 pycom420g01290
rosa_chinensis	RchiOBHm_Chr4g0414711
rosa_laevigata	RLG00000008122
rosa_multiflora	Rmu_sc0001192.1_g000027 Rmu_sc0010606.1_g000008
rosa_roxburghii	Rroxscaffold_5G00358520
rosa_rugosa	Rorug04G0129800 Rorug04G0129900 Rorug04G0130000 Rorug04G0130100 Rorug04G0130200 Rorug04G0130200 Rorug04G0130200
rosa_samantha	Rh4AG188300 Rh4BG187300 Rh4CG200600 Rh4DG187000
rosa_wichuraiana	Rw4G016070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1036
Acc36I	ACCTGC	1 cut(s)	598
AccII	CGCG	1 cut(s)	994
AciI	CCGC	4 cut(s)	157, 379, 918, 992
AcoI	YGGCCR	2 cut(s)	712, 898
AcsI	RAATTY	1 cut(s)	77
AflIII	ACRYGT	1 cut(s)	264
AgsI	TTSAA	5 cut(s)	185, 542, 858, 964, 1015
AhlI	ACTAGT	1 cut(s)	557
AjnI	CCWGG	1 cut(s)	699
Alw26I	GTCTC	3 cut(s)	174, 193, 626
Ama87I	CYCGRG	1 cut(s)	164
AoxI	GGCC	3 cut(s)	240, 712, 898
ApeKI	GCWGC	3 cut(s)	226, 637, 955
ApoI	RAATTY	1 cut(s)	77
Asp700I	GAANNNNTTC	1 cut(s)	546
AspLEI	GCGC	1 cut(s)	996
AspS9I	GGNCC	3 cut(s)	518, 806, 989
AsuHPI	GGTGA	2 cut(s)	73, 265
AvaI	CYCGRG	1 cut(s)	164
AvaII	GGWCC	3 cut(s)	518, 806, 989
BalI	TGGCCA	1 cut(s)	900
BanII	GRGCYC	1 cut(s)	19
BbvI	GCAGC	3 cut(s)	238, 624, 967
BccI	CCATC	4 cut(s)	250, 412, 817, 890
BciT130I	CCWGG	1 cut(s)	701
BciVI	GTATCC	1 cut(s)	289
BcoDI	GTCTC	3 cut(s)	174, 193, 626
BcuI	ACTAGT	1 cut(s)	557
BfaI	CTAG	4 cut(s)	372, 558, 893, 1004
BfmI	CTRYAG	2 cut(s)	24, 1041
BfuAI	ACCTGC	1 cut(s)	598
BfuI	GTATCC	1 cut(s)	289
BisI	GCNGC	4 cut(s)	227, 638, 918, 956
BlsI	GCNGC	4 cut(s)	228, 639, 919, 957
Bme1390I	CCNGG	1 cut(s)	701
Bme18I	GGWCC	3 cut(s)	518, 806, 989
BmeT110I	CYCGRG	1 cut(s)	164
BmgT120I	GGNCC	3 cut(s)	518, 806, 989
BmiI	GGNNCC	3 cut(s)	519, 781, 819
BmrFI	CCNGG	1 cut(s)	701
BmsI	GCATC	2 cut(s)	213, 438
BpmI	CTGGAG	1 cut(s)	257
Bpu10I	CCTNAGC	3 cut(s)	132, 332, 985
BpuEI	CTTGAG	1 cut(s)	236
BsaAI	YACGTR	1 cut(s)	1059
BsaI	GGTCTC	1 cut(s)	626
BsaJI	CCNNGG	3 cut(s)	699, 700, 813
Bse1I	ACTGG	2 cut(s)	240, 408
Bse3DI	GCAATG	3 cut(s)	488, 752, 764
BseBI	CCWGG	1 cut(s)	701
BseDI	CCNNGG	3 cut(s)	699, 700, 813
BseGI	GGATG	3 cut(s)	404, 809, 868
BseMI	GCAATG	3 cut(s)	488, 752, 764
BseMII	CTCAG	3 cut(s)	136, 146, 180
BseNI	ACTGG	2 cut(s)	240, 408
BseRI	GAGGAG	3 cut(s)	233, 326, 401
BseXI	GCAGC	3 cut(s)	238, 624, 967
BseYI	CCCAGC	2 cut(s)	18, 350
BsgI	GTGCAG	1 cut(s)	507
Bsh1236I	CGCG	1 cut(s)	994
BshFI	GGCC	3 cut(s)	242, 714, 900
BsiHKCI	CYCGRG	1 cut(s)	164
BslFI	GGGAC	1 cut(s)	367
BsmAI	GTCTC	3 cut(s)	174, 193, 626
BsmBI	CGTCTC	1 cut(s)	193
BsmFI	GGGAC	1 cut(s)	367
BsmI	GAATGC	1 cut(s)	274
BsnI	GGCC	3 cut(s)	242, 714, 900
Bso31I	GGTCTC	1 cut(s)	626
BsoBI	CYCGRG	1 cut(s)	164
Bsp1286I	GDGCHC	1 cut(s)	19
Bsp143I	GATC	3 cut(s)	10, 63, 563
BspACI	CCGC	4 cut(s)	157, 379, 918, 992
BspANI	GGCC	3 cut(s)	242, 714, 900
BspCNI	CTCAG	3 cut(s)	135, 145, 181
BspFNI	CGCG	1 cut(s)	994
BspLI	GGNNCC	3 cut(s)	519, 781, 819
BspMAI	CTGCAG	1 cut(s)	28
BspMI	ACCTGC	1 cut(s)	598
BspQI	GCTCTTC	1 cut(s)	32
BspTNI	GGTCTC	1 cut(s)	626
BsrDI	GCAATG	3 cut(s)	488, 752, 764
BsrI	ACTGG	2 cut(s)	240, 408
BssECI	CCNNGG	3 cut(s)	699, 700, 813
BssMI	GATC	3 cut(s)	10, 63, 563
Bst2UI	CCWGG	1 cut(s)	701
Bst4CI	ACNGT	1 cut(s)	850
Bst6I	CTCTTC	1 cut(s)	32
BstAPI	GCANNNNNTGC	2 cut(s)	280, 448
BstBAI	YACGTR	1 cut(s)	1059
BstC8I	GCNNGC	2 cut(s)	24, 285
BstDEI	CTNAG	7 cut(s)	122, 132, 189, 320, 332, 452, 985
BstDSI	CCRYGG	1 cut(s)	813
BstF5I	GGATG	3 cut(s)	404, 809, 868
BstFNI	CGCG	1 cut(s)	994
BstHHI	GCGC	1 cut(s)	996
BstKTI	GATC	3 cut(s)	13, 66, 566
BstMAI	GTCTC	3 cut(s)	174, 193, 626
BstMBI	GATC	3 cut(s)	10, 63, 563
BstMWI	GCNNNNNNNGC	9 cut(s)	23, 28, 280, 356, 448, 457, 466, 923, 981
BstNI	CCWGG	1 cut(s)	701
BstNSI	RCATGY	2 cut(s)	268, 875
BstSCI	CCNGG	1 cut(s)	699
BstSFI	CTRYAG	2 cut(s)	24, 1041
BstUI	CGCG	1 cut(s)	994
BstV1I	GCAGC	3 cut(s)	238, 624, 967
BstXI	CCANNNNNNTGG	1 cut(s)	250
BsuI	GTATCC	1 cut(s)	289
BsuRI	GGCC	3 cut(s)	242, 714, 900
BtgI	CCRYGG	1 cut(s)	813
BtgZI	GCGATG	1 cut(s)	57
BtsCI	GGATG	3 cut(s)	404, 809, 868
BtsIMutI	CAGTG	3 cut(s)	415, 663, 855
BveI	ACCTGC	1 cut(s)	598
Cac8I	GCNNGC	2 cut(s)	24, 285
CfoI	GCGC	1 cut(s)	996
Cfr13I	GGNCC	3 cut(s)	518, 806, 989
CseI	GACGC	1 cut(s)	210
CviAII	CATG	4 cut(s)	265, 716, 872, 998
DdeI	CTNAG	7 cut(s)	122, 132, 189, 320, 332, 452, 985
DpnI	GATC	3 cut(s)	12, 65, 565
DpnII	GATC	3 cut(s)	10, 63, 563
DraI	TTTAAA	2 cut(s)	586, 646
DrdI	GACNNNNNNGTC	1 cut(s)	1036
DseDI	GACNNNNNNGTC	1 cut(s)	1036
EaeI	YGGCCR	2 cut(s)	712, 898
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
Eco24I	GRGCYC	1 cut(s)	19
Eco31I	GGTCTC	1 cut(s)	626
Eco32I	GATATC	1 cut(s)	477
Eco47I	GGWCC	3 cut(s)	518, 806, 989
Eco88I	CYCGRG	1 cut(s)	164
EcoO109I	RGGNCCY	1 cut(s)	518
EcoRI	GAATTC	1 cut(s)	77
EcoRII	CCWGG	1 cut(s)	699
EcoRV	GATATC	1 cut(s)	477
EcoT38I	GRGCYC	1 cut(s)	19
Esp3I	CGTCTC	1 cut(s)	193
FaeI	CATG	4 cut(s)	268, 719, 875, 1001
FaqI	GGGAC	1 cut(s)	367
FatI	CATG	4 cut(s)	264, 715, 871, 997
FauNDI	CATATG	2 cut(s)	471, 922
Fnu4HI	GCNGC	4 cut(s)	227, 638, 918, 956
FokI	GGATG	3 cut(s)	391, 796, 875
FriOI	GRGCYC	1 cut(s)	19
Fsp4HI	GCNGC	4 cut(s)	227, 638, 918, 956
FspBI	CTAG	4 cut(s)	372, 558, 893, 1004
GlaI	GCGC	1 cut(s)	995
GluI	GCNGC	4 cut(s)	227, 638, 918, 956
GsaI	CCCAGC	2 cut(s)	22, 354
GsuI	CTGGAG	1 cut(s)	257
HaeIII	GGCC	3 cut(s)	242, 714, 900
HgaI	GACGC	1 cut(s)	210
HhaI	GCGC	1 cut(s)	996
Hin1II	CATG	4 cut(s)	268, 719, 875, 1001
Hin6I	GCGC	1 cut(s)	994
HinP1I	GCGC	1 cut(s)	994
HinfI	GANTC	6 cut(s)	106, 160, 167, 191, 389, 542
HphI	GGTGA	2 cut(s)	73, 265
Hpy166II	GTNNAC	1 cut(s)	510
Hpy188I	TCNGA	2 cut(s)	684, 832
Hpy188III	TCNNGA	3 cut(s)	134, 164, 893
Hpy8I	GTNNAC	1 cut(s)	510
HpyAV	CCTTC	3 cut(s)	52, 450, 1009
HpyCH4III	ACNGT	1 cut(s)	850
HpyCH4IV	ACGT	1 cut(s)	1058
HpyCH4V	TGCA	6 cut(s)	26, 226, 442, 524, 593, 692
HpyF10VI	GCNNNNNNNGC	9 cut(s)	23, 28, 280, 356, 448, 457, 466, 923, 981
HpyF3I	CTNAG	7 cut(s)	122, 132, 189, 320, 332, 452, 985
HpySE526I	ACGT	1 cut(s)	1058
Hsp92II	CATG	4 cut(s)	268, 719, 875, 1001
HspAI	GCGC	1 cut(s)	994
Kzo9I	GATC	3 cut(s)	10, 63, 563
LguI	GCTCTTC	1 cut(s)	32
LmnI	GCTCC	4 cut(s)	313, 817, 952, 1018
Lsp1109I	GCAGC	3 cut(s)	238, 624, 967
LweI	GCATC	2 cut(s)	213, 438
MaeI	CTAG	4 cut(s)	372, 558, 893, 1004
MaeII	ACGT	1 cut(s)	1058
MaeIII	GTNAC	3 cut(s)	336, 410, 840
MalI	GATC	3 cut(s)	12, 65, 565
MboI	GATC	3 cut(s)	10, 63, 563
MboII	GAAGA	4 cut(s)	46, 49, 105, 151
MhlI	GDGCHC	1 cut(s)	19
MlsI	TGGCCA	1 cut(s)	900
MluCI	AATT	6 cut(s)	77, 571, 612, 964, 1009, 1032
MluNI	TGGCCA	1 cut(s)	900
MlyI	GAGTC	4 cut(s)	115, 176, 200, 398
MmeI	TCCRAC	1 cut(s)	363
Mox20I	TGGCCA	1 cut(s)	900
MroXI	GAANNNNTTC	1 cut(s)	546
MscI	TGGCCA	1 cut(s)	900
MseI	TTAA	5 cut(s)	432, 585, 645, 743, 978
Msp20I	TGGCCA	1 cut(s)	900
MspA1I	CMGCKG	2 cut(s)	157, 229
MspR9I	CCNGG	1 cut(s)	701
Mva1269I	GAATGC	1 cut(s)	274
MvaI	CCWGG	1 cut(s)	701
MvnI	CGCG	1 cut(s)	994
MwoI	GCNNNNNNNGC	9 cut(s)	23, 28, 280, 356, 448, 457, 466, 923, 981
NdeI	CATATG	2 cut(s)	471, 922
NdeII	GATC	3 cut(s)	10, 63, 563
NlaIII	CATG	4 cut(s)	268, 719, 875, 1001
NlaIV	GGNNCC	3 cut(s)	519, 781, 819
NmuCI	GTSAC	3 cut(s)	336, 410, 840
NspI	RCATGY	2 cut(s)	268, 875
PaeR7I	CTCGAG	1 cut(s)	164
PasI	CCCWGGG	1 cut(s)	700
PciI	ACATGT	1 cut(s)	264
PciSI	GCTCTTC	1 cut(s)	32
PctI	GAATGC	1 cut(s)	274
PdmI	GAANNNNTTC	1 cut(s)	546
PfeI	GAWTC	2 cut(s)	160, 542
PkrI	GCNGC	4 cut(s)	228, 639, 919, 957
PleI	GAGTC	4 cut(s)	114, 175, 199, 397
PpsI	GAGTC	4 cut(s)	114, 175, 199, 397
Ppu21I	YACGTR	1 cut(s)	1059
PpuMI	RGGWCCY	1 cut(s)	518
PscI	ACATGT	1 cut(s)	264
Psp5II	RGGWCCY	1 cut(s)	518
Psp6I	CCWGG	1 cut(s)	699
PspFI	CCCAGC	2 cut(s)	18, 350
PspGI	CCWGG	1 cut(s)	699
PspN4I	GGNNCC	3 cut(s)	519, 781, 819
PspPI	GGNCC	3 cut(s)	518, 806, 989
PspPPI	RGGWCCY	1 cut(s)	518
PstI	CTGCAG	1 cut(s)	28
PvuII	CAGCTG	1 cut(s)	229
SapI	GCTCTTC	1 cut(s)	32
SaqAI	TTAA	5 cut(s)	432, 585, 645, 743, 978
SatI	GCNGC	4 cut(s)	227, 638, 918, 956
Sau3AI	GATC	3 cut(s)	10, 63, 563
Sau96I	GGNCC	3 cut(s)	518, 806, 989
SchI	GAGTC	4 cut(s)	115, 176, 200, 398
ScrFI	CCNGG	1 cut(s)	701
SduI	GDGCHC	1 cut(s)	19
SfaNI	GCATC	2 cut(s)	213, 438
SfcI	CTRYAG	2 cut(s)	24, 1041
Sfr274I	CTCGAG	1 cut(s)	164
SinI	GGWCC	3 cut(s)	518, 806, 989
SlaI	CTCGAG	1 cut(s)	164
SmlI	CTYRAG	2 cut(s)	164, 215
SmoI	CTYRAG	2 cut(s)	164, 215
SpeI	ACTAGT	1 cut(s)	557
Sse9I	AATT	6 cut(s)	77, 571, 612, 964, 1009, 1032
SsiI	CCGC	4 cut(s)	157, 379, 918, 992
SspMI	CTAG	4 cut(s)	372, 558, 893, 1004
StyD4I	CCNGG	1 cut(s)	699
TaaI	ACNGT	1 cut(s)	850
TaiI	ACGT	1 cut(s)	1061
TaqI	TCGA	6 cut(s)	13, 48, 66, 81, 165, 580
TasI	AATT	6 cut(s)	77, 571, 612, 964, 1009, 1032
TauI	GCSGC	1 cut(s)	920
TfiI	GAWTC	2 cut(s)	160, 542
Tru1I	TTAA	5 cut(s)	432, 585, 645, 743, 978
Tru9I	TTAA	5 cut(s)	432, 585, 645, 743, 978
TscAI	CASTG	3 cut(s)	415, 670, 855
TseFI	GTSAC	3 cut(s)	336, 410, 840
TseI	GCWGC	3 cut(s)	226, 637, 955
Tsp45I	GTSAC	3 cut(s)	336, 410, 840
TspDTI	ATGAA	4 cut(s)	416, 477, 726, 816
TspGWI	ACGGA	2 cut(s)	802, 875
TspRI	CASTG	3 cut(s)	415, 670, 855
VpaK11BI	GGWCC	3 cut(s)	518, 806, 989
XapI	RAATTY	1 cut(s)	77
XbaI	TCTAGA	1 cut(s)	892
XceI	RCATGY	2 cut(s)	268, 875
XhoI	CTCGAG	1 cut(s)	164
XmnI	GAANNNNTTC	1 cut(s)	546
XspI	CTAG	4 cut(s)	372, 558, 893, 1004

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.