Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003174

Physical Location & Seq

Genomic Coordinates Forward (+)

17324752 .. 17329780

Gene Structure 5029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g13790.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGAAGCAGAAGCTGGAGGCTAGGAAAGCGGTAATGGGAAAAATGTCTATGCATTCTATGCTTGCTGTGGAGGATACTAAAATGAAAGAGGAACAGCTTAGTACAGAGCTAAGGTCGCTATTGGTTGCTGGGACAGCTCTATCAGTAGCTAGGAAGCGACTGGAGGAGTCAAATCAGCTACTTTCCAGAGACAATGGATATATTCGTCTTAAAAACTTGCAAAAGATGCTAAGAAGAAGACAACAAAATATGATAACACAAGTTTCATTGCTCTATCCTGTAAAGTTCACTATGGGTCCTGCACATGAACAGGAGCTTGAATCATTTCCTAACACTAGTAGATCAGGTAATTCTGCTCGATTTAAACCTGCAAATCAGGGAACATTGACAATTTTAGGCTTGCATTTGACCATGCTGCCTTTTAAAATGACGAGTTTCTTCACCGACAAGAAAGAGGTTCAGAAGTCTGCAACAGCCCTGGGATATGTCGGCCATGCTGTTTGCCTTATAGCCTCCTACTTAAAAGTTCCATTGCGTTATCCTTTGCGCTTGGGTGGTTCCCATTCCTATATTATTGATTATGGACCATCCGTAGACCCTACAACATCTGATTTAACGTCAAATACAGTGGTTTCCACGGATGTGAAACATGTGGAGTTCCCTCTCTTTTTAGATGGTCAAGACACGACAAGAGCAGCTTATGCTGTATTCTTACTAAACAAGGATTTAGAACAGCTTCTGAATTTCATTGGTGTAAAAAGCTTAGGGCCACGGCATGTGCTGGCCAATTTGAAGGAGCTTGTAAGGACCATTCAGTCTGTAGATTATATTGTTTCTGATGTACCAGTTTTGTCTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04140 map04140

Pfam Domains

Protein Families

Atg14

Protein Analysis

287

Amino Acids

32.0

Weight (kDa)

9.59

Isoelectric Point (pI)

44.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32760 AT2G32760 AT2G32760
fragaria_vesca	FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790
malus_domestica	MD00G1113200.v1.1 MD04G1010600.v1.1
prunus_persica	Prupe.1G010300_v2.0.a1 Prupe.1G010300_v2.0.a1 Prupe.1G010300_v2.0.a1
pyrus_communis	pycom04g00870 pycom420g01290
rosa_chinensis	RchiOBHm_Chr4g0414711
rosa_laevigata	RLG00000008122
rosa_multiflora	Rmu_sc0001192.1_g000027 Rmu_sc0010606.1_g000008
rosa_roxburghii	Rroxscaffold_5G00358520
rosa_rugosa	Rorug04G0129800 Rorug04G0129900 Rorug04G0130000 Rorug04G0130100 Rorug04G0130200 Rorug04G0130200 Rorug04G0130200
rosa_samantha	Rh4AG188300 Rh4BG187300 Rh4CG200600 Rh4DG187000
rosa_wichuraiana	Rw4G016070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	814
Acc36I	ACCTGC	1 cut(s)	376
AccI	GTMKAC	1 cut(s)	594
AciI	CCGC	1 cut(s)	29
AcoI	YGGCCR	2 cut(s)	490, 783
AcsI	RAATTY	1 cut(s)	742
AfaI	GTAC	2 cut(s)	103, 843
AflIII	ACRYGT	1 cut(s)	649
AgsI	TTSAA	2 cut(s)	320, 793
AhlI	ACTAGT	1 cut(s)	335
AjnI	CCWGG	1 cut(s)	477
AleI	CACNNNNGTG	1 cut(s)	641
Alw26I	GTCTC	1 cut(s)	183
AlwNI	CAGNNNCTG	2 cut(s)	13, 739
AoxI	GGCC	3 cut(s)	490, 767, 783
ApeKI	GCWGC	2 cut(s)	415, 695
ApoI	RAATTY	1 cut(s)	742
Asp700I	GAANNNNTTC	2 cut(s)	324, 735
AspLEI	GCGC	1 cut(s)	549
AspS9I	GGNCC	4 cut(s)	296, 584, 767, 807
AsuHPI	GGTGA	1 cut(s)	433
AvaII	GGWCC	3 cut(s)	296, 584, 807
BalI	TGGCCA	1 cut(s)	785
BbsI	GAAGAC	1 cut(s)	244
BbvI	GCAGC	2 cut(s)	402, 707
BccI	CCATC	2 cut(s)	595, 668
BceAI	ACGGC	1 cut(s)	788
BciT130I	CCWGG	1 cut(s)	479
BciVI	GTATCC	1 cut(s)	67
BcoDI	GTCTC	1 cut(s)	183
BcuI	ACTAGT	1 cut(s)	335
BfaI	CTAG	3 cut(s)	21, 150, 336
BfmI	CTRYAG	1 cut(s)	819
BfuAI	ACCTGC	1 cut(s)	376
BfuI	GTATCC	1 cut(s)	67
BisI	GCNGC	2 cut(s)	416, 696
BlsI	GCNGC	2 cut(s)	417, 697
Bme1390I	CCNGG	1 cut(s)	479
Bme18I	GGWCC	3 cut(s)	296, 584, 807
BmgT120I	GGNCC	4 cut(s)	296, 584, 767, 807
BmiI	GGNNCC	2 cut(s)	297, 559
BmrFI	CCNGG	1 cut(s)	479
BmsI	GCATC	1 cut(s)	216
BpiI	GAAGAC	1 cut(s)	244
BpmI	CTGGAG	2 cut(s)	35, 182
Bpu10I	CCTNAGC	2 cut(s)	110, 763
BsaJI	CCNNGG	4 cut(s)	477, 478, 636, 770
Bse1I	ACTGG	2 cut(s)	165, 845
Bse3DI	GCAATG	2 cut(s)	266, 530
BseBI	CCWGG	1 cut(s)	479
BseDI	CCNNGG	4 cut(s)	477, 478, 636, 770
BseGI	GGATG	2 cut(s)	587, 646
BseMI	GCAATG	2 cut(s)	266, 530
BseNI	ACTGG	2 cut(s)	165, 845
BseRI	GAGGAG	1 cut(s)	179
BseXI	GCAGC	2 cut(s)	402, 707
BseYI	CCCAGC	1 cut(s)	128
BsgI	GTGCAG	1 cut(s)	285
BshFI	GGCC	3 cut(s)	492, 769, 785
BslFI	GGGAC	1 cut(s)	145
BsmAI	GTCTC	1 cut(s)	183
BsmFI	GGGAC	1 cut(s)	145
BsmI	GAATGC	1 cut(s)	52
BsnI	GGCC	3 cut(s)	492, 769, 785
Bsp143I	GATC	1 cut(s)	341
BspACI	CCGC	1 cut(s)	29
BspANI	GGCC	3 cut(s)	492, 769, 785
BspLI	GGNNCC	2 cut(s)	297, 559
BspMI	ACCTGC	1 cut(s)	376
BsrDI	GCAATG	2 cut(s)	266, 530
BsrI	ACTGG	2 cut(s)	165, 845
BssECI	CCNNGG	4 cut(s)	477, 478, 636, 770
BssMI	GATC	1 cut(s)	341
Bst2UI	CCWGG	1 cut(s)	479
Bst4CI	ACNGT	1 cut(s)	628
BstAPI	GCANNNNNTGC	3 cut(s)	58, 226, 701
BstC8I	GCNNGC	3 cut(s)	63, 401, 783
BstDEI	CTNAG	4 cut(s)	98, 110, 230, 763
BstDSI	CCRYGG	2 cut(s)	636, 770
BstF5I	GGATG	2 cut(s)	587, 646
BstHHI	GCGC	1 cut(s)	549
BstKTI	GATC	1 cut(s)	344
BstMAI	GTCTC	1 cut(s)	183
BstMBI	GATC	1 cut(s)	341
BstMWI	GCNNNNNNNGC	6 cut(s)	26, 58, 115, 134, 226, 701
BstNI	CCWGG	1 cut(s)	479
BstNSI	RCATGY	2 cut(s)	653, 779
BstSCI	CCNGG	1 cut(s)	477
BstSFI	CTRYAG	1 cut(s)	819
BstV1I	GCAGC	2 cut(s)	402, 707
BstV2I	GAAGAC	1 cut(s)	244
BsuI	GTATCC	1 cut(s)	67
BsuRI	GGCC	3 cut(s)	492, 769, 785
BtgI	CCRYGG	2 cut(s)	636, 770
BtsCI	GGATG	2 cut(s)	587, 646
BtsIMutI	CAGTG	1 cut(s)	633
BveI	ACCTGC	1 cut(s)	376
Cac8I	GCNNGC	3 cut(s)	63, 401, 783
CaiI	CAGNNNCTG	2 cut(s)	13, 739
CfoI	GCGC	1 cut(s)	549
Cfr13I	GGNCC	4 cut(s)	296, 584, 767, 807
Csp6I	GTAC	2 cut(s)	102, 842
CspCI	CAANNNNNGTGG	2 cut(s)	609, 644
CviAII	CATG	5 cut(s)	305, 412, 494, 650, 776
CviQI	GTAC	2 cut(s)	102, 842
DdeI	CTNAG	4 cut(s)	98, 110, 230, 763
DpnI	GATC	1 cut(s)	343
DpnII	GATC	1 cut(s)	341
DraI	TTTAAA	2 cut(s)	364, 424
DrdI	GACNNNNNNGTC	1 cut(s)	814
DseDI	GACNNNNNNGTC	1 cut(s)	814
EaeI	YGGCCR	2 cut(s)	490, 783
Eco47I	GGWCC	3 cut(s)	296, 584, 807
EcoO109I	RGGNCCY	1 cut(s)	296
EcoRII	CCWGG	1 cut(s)	477
EcoT22I	ATGCAT	1 cut(s)	54
FaeI	CATG	5 cut(s)	308, 415, 497, 653, 779
FalI	AAGNNNNNCTT	2 cut(s)	682, 714
FaqI	GGGAC	1 cut(s)	145
FatI	CATG	5 cut(s)	304, 411, 493, 649, 775
FblI	GTMKAC	1 cut(s)	594
Fnu4HI	GCNGC	2 cut(s)	416, 696
FokI	GGATG	2 cut(s)	574, 653
Fsp4HI	GCNGC	2 cut(s)	416, 696
FspBI	CTAG	3 cut(s)	21, 150, 336
GlaI	GCGC	1 cut(s)	548
GluI	GCNGC	2 cut(s)	416, 696
GsaI	CCCAGC	1 cut(s)	132
GsuI	CTGGAG	2 cut(s)	35, 182
HaeIII	GGCC	3 cut(s)	492, 769, 785
HhaI	GCGC	1 cut(s)	549
Hin1II	CATG	5 cut(s)	308, 415, 497, 653, 779
Hin6I	GCGC	1 cut(s)	547
HinP1I	GCGC	1 cut(s)	547
HindIII	AAGCTT	1 cut(s)	760
HinfI	GANTC	2 cut(s)	167, 320
HphI	GGTGA	1 cut(s)	433
Hpy166II	GTNNAC	2 cut(s)	288, 595
Hpy188I	TCNGA	4 cut(s)	462, 610, 741, 838
Hpy188III	TCNNGA	2 cut(s)	186, 680
Hpy8I	GTNNAC	2 cut(s)	288, 595
HpyAV	CCTTC	1 cut(s)	787
HpyCH4III	ACNGT	1 cut(s)	628
HpyCH4IV	ACGT	1 cut(s)	617
HpyCH4V	TGCA	6 cut(s)	52, 220, 302, 371, 403, 470
HpyF10VI	GCNNNNNNNGC	6 cut(s)	26, 58, 115, 134, 226, 701
HpyF3I	CTNAG	4 cut(s)	98, 110, 230, 763
HpySE526I	ACGT	1 cut(s)	617
Hsp92II	CATG	5 cut(s)	308, 415, 497, 653, 779
HspAI	GCGC	1 cut(s)	547
Kzo9I	GATC	1 cut(s)	341
LmnI	GCTCC	2 cut(s)	313, 796
Lsp1109I	GCAGC	2 cut(s)	402, 707
LweI	GCATC	1 cut(s)	216
MaeI	CTAG	3 cut(s)	21, 150, 336
MaeII	ACGT	1 cut(s)	617
MalI	GATC	1 cut(s)	343
MboI	GATC	1 cut(s)	341
MboII	GAAGA	3 cut(s)	246, 249, 430
MlsI	TGGCCA	1 cut(s)	785
MluCI	AATT	4 cut(s)	349, 390, 742, 787
MluNI	TGGCCA	1 cut(s)	785
MlyI	GAGTC	1 cut(s)	176
MnlI	CCTC	7 cut(s)	10, 64, 82, 157, 448, 523, 672
Mox20I	TGGCCA	1 cut(s)	785
Mph1103I	ATGCAT	1 cut(s)	54
MroXI	GAANNNNTTC	2 cut(s)	324, 735
MscI	TGGCCA	1 cut(s)	785
MseI	TTAA	5 cut(s)	210, 363, 423, 521, 614
MslI	CAYNNNNRTG	1 cut(s)	641
Msp20I	TGGCCA	1 cut(s)	785
MspR9I	CCNGG	1 cut(s)	479
Mva1269I	GAATGC	1 cut(s)	52
MvaI	CCWGG	1 cut(s)	479
MwoI	GCNNNNNNNGC	6 cut(s)	26, 58, 115, 134, 226, 701
NdeII	GATC	1 cut(s)	341
NlaIII	CATG	5 cut(s)	308, 415, 497, 653, 779
NlaIV	GGNNCC	2 cut(s)	297, 559
NsiI	ATGCAT	1 cut(s)	54
NspI	RCATGY	2 cut(s)	653, 779
OliI	CACNNNNGTG	1 cut(s)	641
PasI	CCCWGGG	1 cut(s)	478
PciI	ACATGT	1 cut(s)	649
PctI	GAATGC	1 cut(s)	52
PdmI	GAANNNNTTC	2 cut(s)	324, 735
PfeI	GAWTC	1 cut(s)	320
PkrI	GCNGC	2 cut(s)	417, 697
PleI	GAGTC	1 cut(s)	175
PpsI	GAGTC	1 cut(s)	175
PpuMI	RGGWCCY	1 cut(s)	296
PscI	ACATGT	1 cut(s)	649
Psp5II	RGGWCCY	1 cut(s)	296
Psp6I	CCWGG	1 cut(s)	477
PspFI	CCCAGC	1 cut(s)	128
PspGI	CCWGG	1 cut(s)	477
PspN4I	GGNNCC	2 cut(s)	297, 559
PspPI	GGNCC	4 cut(s)	296, 584, 767, 807
PspPPI	RGGWCCY	1 cut(s)	296
PstNI	CAGNNNCTG	2 cut(s)	13, 739
RsaI	GTAC	2 cut(s)	103, 843
RsaNI	GTAC	2 cut(s)	102, 842
RseI	CAYNNNNRTG	1 cut(s)	641
SaqAI	TTAA	5 cut(s)	210, 363, 423, 521, 614
SatI	GCNGC	2 cut(s)	416, 696
Sau3AI	GATC	1 cut(s)	341
Sau96I	GGNCC	4 cut(s)	296, 584, 767, 807
SchI	GAGTC	1 cut(s)	176
ScrFI	CCNGG	1 cut(s)	479
SfaNI	GCATC	1 cut(s)	216
SfcI	CTRYAG	1 cut(s)	819
SinI	GGWCC	3 cut(s)	296, 584, 807
SmiMI	CAYNNNNRTG	1 cut(s)	641
SpeI	ACTAGT	1 cut(s)	335
Sse9I	AATT	4 cut(s)	349, 390, 742, 787
SsiI	CCGC	1 cut(s)	29
SspMI	CTAG	3 cut(s)	21, 150, 336
StyD4I	CCNGG	1 cut(s)	477
TaaI	ACNGT	1 cut(s)	628
TaiI	ACGT	1 cut(s)	620
TaqI	TCGA	1 cut(s)	358
TasI	AATT	4 cut(s)	349, 390, 742, 787
TatI	WGTACW	1 cut(s)	101
TfiI	GAWTC	1 cut(s)	320
Tru1I	TTAA	5 cut(s)	210, 363, 423, 521, 614
Tru9I	TTAA	5 cut(s)	210, 363, 423, 521, 614
TscAI	CASTG	1 cut(s)	633
TseI	GCWGC	2 cut(s)	415, 695
TspDTI	ATGAA	5 cut(s)	17, 98, 255, 321, 736
TspGWI	ACGGA	2 cut(s)	580, 653
TspRI	CASTG	1 cut(s)	633
VpaK11BI	GGWCC	3 cut(s)	296, 584, 807
XapI	RAATTY	1 cut(s)	742
XceI	RCATGY	2 cut(s)	653, 779
XmiI	GTMKAC	1 cut(s)	594
XmnI	GAANNNNTTC	2 cut(s)	324, 735
XspI	CTAG	3 cut(s)	21, 150, 336
Zsp2I	ATGCAT	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.