Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010606.1

Orthogroup ID

OG0003174

Physical Location & Seq

Genomic Coordinates Forward (+)

33712 .. 34661

Gene Structure 950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010606.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

atggaacgaaaccgaacccccgccgcagcagagccgaacaagaacaagagcgatcccgaaaaggtgaaggtaatcgaatgggaggaattcgagcaggaggttgccaggttgtggagtctgtcttctgcgctcaaggaagctcaggagaagaagcagagtcttaagcagaagctcgagtctctcattgaggttgaagctgagtcattgaatcgatcaaatgagcttgaggagatgcagcagaaactggaggcgagaaaagtggtaatgggaaacatgtccatgcattctatggttgctgtggaggatactaaaaagaacgagggacagcttagtacagaactaaggtcgctattggtcgctgggacagctctatccgcagctaggaagaaactggaggtaaaatatataatgactatgtaccaaaaagtgtttgggtttgcaatgatggaagaggatttctacgtttctgaactataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04140 map04140

Pfam Domains

Protein Families

Atg14

Protein Analysis

158

Amino Acids

18.17

Weight (kDa)

5.31

Isoelectric Point (pI)

56.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32760 AT2G32760 AT2G32760
fragaria_vesca	FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790
malus_domestica	MD00G1113200.v1.1 MD04G1010600.v1.1
prunus_persica	Prupe.1G010300_v2.0.a1 Prupe.1G010300_v2.0.a1 Prupe.1G010300_v2.0.a1
pyrus_communis	pycom04g00870 pycom420g01290
rosa_chinensis	RchiOBHm_Chr4g0414711
rosa_laevigata	RLG00000008122
rosa_multiflora	Rmu_sc0001192.1_g000027 Rmu_sc0010606.1_g000008
rosa_roxburghii	Rroxscaffold_5G00358520
rosa_rugosa	Rorug04G0129800 Rorug04G0129900 Rorug04G0130000 Rorug04G0130100 Rorug04G0130200 Rorug04G0130200 Rorug04G0130200
rosa_samantha	Rh4AG188300 Rh4BG187300 Rh4CG200600 Rh4DG187000
rosa_wichuraiana	Rw4G016070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	111
AciI	CCGC	3 cut(s)	21, 24, 375
AclWI	GGATC	1 cut(s)	47
AcsI	RAATTY	1 cut(s)	86
AfaI	GTAC	2 cut(s)	334, 419
AfiI	CCNNNNNNNGG	2 cut(s)	111, 381
AflII	CTTAAG	1 cut(s)	161
AflIII	ACRYGT	1 cut(s)	273
AgsI	TTSAA	2 cut(s)	194, 208
AjnI	CCWGG	1 cut(s)	104
AluBI	AGCT	7 cut(s)	140, 172, 197, 223, 328, 368, 380
AluI	AGCT	7 cut(s)	140, 172, 197, 223, 328, 368, 380
Alw26I	GTCTC	1 cut(s)	183
AlwI	GGATC	1 cut(s)	47
AlwNI	CAGNNNCTG	1 cut(s)	244
Ama87I	CYCGRG	1 cut(s)	173
ApeKI	GCWGC	3 cut(s)	26, 235, 377
ApoI	RAATTY	1 cut(s)	86
AspLEI	GCGC	1 cut(s)	130
AsuHPI	GGTGA	1 cut(s)	76
AvaI	CYCGRG	1 cut(s)	173
BbsI	GAAGAC	1 cut(s)	114
BbvI	GCAGC	3 cut(s)	38, 247, 389
BccI	CCATC	1 cut(s)	439
BciT130I	CCWGG	1 cut(s)	106
BciVI	GTATCC	1 cut(s)	298
BcoDI	GTCTC	1 cut(s)	183
BfaI	CTAG	1 cut(s)	381
BfrI	CTTAAG	1 cut(s)	161
BfuI	GTATCC	1 cut(s)	298
BisI	GCNGC	4 cut(s)	24, 27, 236, 378
BlsI	GCNGC	4 cut(s)	25, 28, 237, 379
Bme1390I	CCNGG	1 cut(s)	106
BmeT110I	CYCGRG	1 cut(s)	173
BmrFI	CCNGG	1 cut(s)	106
BmsI	GCATC	1 cut(s)	222
BpiI	GAAGAC	1 cut(s)	114
BpmI	CTGGAG	2 cut(s)	266, 413
Bpu10I	CCTNAGC	1 cut(s)	141
BpuEI	CTTGAG	2 cut(s)	116, 245
Bsa29I	ATCGAT	1 cut(s)	211
Bsc4I	CCNNNNNNNGG	2 cut(s)	111, 381
Bse1I	ACTGG	2 cut(s)	249, 396
Bse3DI	GCAATG	1 cut(s)	447
BseBI	CCWGG	1 cut(s)	106
BseCI	ATCGAT	1 cut(s)	211
BseLI	CCNNNNNNNGG	2 cut(s)	111, 381
BseMI	GCAATG	1 cut(s)	447
BseMII	CTCAG	2 cut(s)	155, 189
BseNI	ACTGG	2 cut(s)	249, 396
BseRI	GAGGAG	1 cut(s)	242
BseXI	GCAGC	3 cut(s)	38, 247, 389
BseYI	CCCAGC	1 cut(s)	359
BshVI	ATCGAT	1 cut(s)	211
BsiHKCI	CYCGRG	1 cut(s)	173
BslFI	GGGAC	2 cut(s)	336, 376
BslI	CCNNNNNNNGG	2 cut(s)	111, 381
BsmAI	GTCTC	1 cut(s)	183
BsmFI	GGGAC	2 cut(s)	336, 376
BsmI	GAATGC	1 cut(s)	283
BsoBI	CYCGRG	1 cut(s)	173
Bsp143I	GATC	2 cut(s)	52, 212
BspACI	CCGC	3 cut(s)	21, 24, 375
BspCNI	CTCAG	2 cut(s)	154, 190
BspDI	ATCGAT	1 cut(s)	211
BspPI	GGATC	1 cut(s)	47
BspTI	CTTAAG	1 cut(s)	161
BsrDI	GCAATG	1 cut(s)	447
BsrI	ACTGG	2 cut(s)	249, 396
BssMI	GATC	2 cut(s)	52, 212
Bst2UI	CCWGG	1 cut(s)	106
Bst6I	CTCTTC	1 cut(s)	444
BstAFI	CTTAAG	1 cut(s)	161
BstDEI	CTNAG	4 cut(s)	141, 198, 329, 341
BstHHI	GCGC	1 cut(s)	130
BstKTI	GATC	2 cut(s)	55, 215
BstMAI	GTCTC	1 cut(s)	183
BstMBI	GATC	2 cut(s)	52, 212
BstMWI	GCNNNNNNNGC	2 cut(s)	365, 374
BstNI	CCWGG	1 cut(s)	106
BstNSI	RCATGY	1 cut(s)	277
BstSCI	CCNGG	1 cut(s)	104
BstV1I	GCAGC	3 cut(s)	38, 247, 389
BstV2I	GAAGAC	1 cut(s)	114
Bsu15I	ATCGAT	1 cut(s)	211
BsuI	GTATCC	1 cut(s)	298
BsuTUI	ATCGAT	1 cut(s)	211
CaiI	CAGNNNCTG	1 cut(s)	244
CfoI	GCGC	1 cut(s)	130
ClaI	ATCGAT	1 cut(s)	211
Csp6I	GTAC	2 cut(s)	333, 418
CviAII	CATG	2 cut(s)	274, 280
CviJI	RGCY	8 cut(s)	34, 140, 172, 197, 223, 328, 368, 380
CviKI_1	RGCY	8 cut(s)	34, 140, 172, 197, 223, 328, 368, 380
CviQI	GTAC	2 cut(s)	333, 418
DdeI	CTNAG	4 cut(s)	141, 198, 329, 341
DpnI	GATC	2 cut(s)	54, 214
DpnII	GATC	2 cut(s)	52, 212
Eam1104I	CTCTTC	1 cut(s)	444
EarI	CTCTTC	1 cut(s)	444
Eco88I	CYCGRG	1 cut(s)	173
EcoRI	GAATTC	1 cut(s)	86
EcoRII	CCWGG	1 cut(s)	104
EcoT22I	ATGCAT	1 cut(s)	285
FaeI	CATG	2 cut(s)	277, 283
FaiI	YATR	7 cut(s)	275, 281, 290, 405, 407, 416, 475
FaqI	GGGAC	2 cut(s)	336, 376
FatI	CATG	2 cut(s)	273, 279
FauI	CCCGC	1 cut(s)	28
Fnu4HI	GCNGC	4 cut(s)	24, 27, 236, 378
Fsp4HI	GCNGC	4 cut(s)	24, 27, 236, 378
FspBI	CTAG	1 cut(s)	381
GlaI	GCGC	1 cut(s)	129
GluI	GCNGC	4 cut(s)	24, 27, 236, 378
GsaI	CCCAGC	1 cut(s)	363
GsuI	CTGGAG	2 cut(s)	266, 413
HhaI	GCGC	1 cut(s)	130
Hin1II	CATG	2 cut(s)	277, 283
Hin6I	GCGC	1 cut(s)	128
HinP1I	GCGC	1 cut(s)	128
HinfI	GANTC	5 cut(s)	115, 157, 176, 200, 208
HphI	GGTGA	1 cut(s)	76
Hpy188I	TCNGA	1 cut(s)	469
Hpy188III	TCNNGA	2 cut(s)	56, 143
HpyAV	CCTTC	1 cut(s)	61
HpyCH4IV	ACGT	1 cut(s)	462
HpyCH4V	TGCA	3 cut(s)	235, 283, 440
HpyF10VI	GCNNNNNNNGC	2 cut(s)	365, 374
HpyF3I	CTNAG	4 cut(s)	141, 198, 329, 341
HpySE526I	ACGT	1 cut(s)	462
Hsp92II	CATG	2 cut(s)	277, 283
HspAI	GCGC	1 cut(s)	128
Kzo9I	GATC	2 cut(s)	52, 212
LpnPI	CCDG	7 cut(s)	80, 91, 118, 128, 230, 345, 377
Lsp1109I	GCAGC	3 cut(s)	38, 247, 389
LweI	GCATC	1 cut(s)	222
MaeI	CTAG	1 cut(s)	381
MaeII	ACGT	1 cut(s)	462
MalI	GATC	2 cut(s)	54, 214
MboI	GATC	2 cut(s)	52, 212
MboII	GAAGA	4 cut(s)	114, 160, 397, 461
MluCI	AATT	1 cut(s)	86
MlyI	GAGTC	4 cut(s)	124, 166, 185, 209
MnlI	CCTC	9 cut(s)	76, 91, 181, 220, 241, 295, 313, 388, 445
Mph1103I	ATGCAT	1 cut(s)	285
MseI	TTAA	1 cut(s)	162
MslI	CAYNNNNRTG	1 cut(s)	278
MspCI	CTTAAG	1 cut(s)	161
MspR9I	CCNGG	1 cut(s)	106
Mva1269I	GAATGC	1 cut(s)	283
MvaI	CCWGG	1 cut(s)	106
MwoI	GCNNNNNNNGC	2 cut(s)	365, 374
NdeII	GATC	2 cut(s)	52, 212
NlaIII	CATG	2 cut(s)	277, 283
NsiI	ATGCAT	1 cut(s)	285
NspI	RCATGY	1 cut(s)	277
PaeR7I	CTCGAG	1 cut(s)	173
PciI	ACATGT	1 cut(s)	273
PctI	GAATGC	1 cut(s)	283
PfeI	GAWTC	1 cut(s)	208
PflMI	CCANNNNNTGG	1 cut(s)	111
PkrI	GCNGC	4 cut(s)	25, 28, 237, 379
PleI	GAGTC	4 cut(s)	123, 165, 184, 208
PpsI	GAGTC	4 cut(s)	123, 165, 184, 208
PscI	ACATGT	1 cut(s)	273
Psp6I	CCWGG	1 cut(s)	104
PspFI	CCCAGC	1 cut(s)	359
PspGI	CCWGG	1 cut(s)	104
PspXI	VCTCGAGB	1 cut(s)	173
PstNI	CAGNNNCTG	1 cut(s)	244
RsaI	GTAC	2 cut(s)	334, 419
RsaNI	GTAC	2 cut(s)	333, 418
RseI	CAYNNNNRTG	1 cut(s)	278
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	4 cut(s)	24, 27, 236, 378
Sau3AI	GATC	2 cut(s)	52, 212
SchI	GAGTC	4 cut(s)	124, 166, 185, 209
ScrFI	CCNGG	1 cut(s)	106
SfaNI	GCATC	1 cut(s)	222
Sfr274I	CTCGAG	1 cut(s)	173
SlaI	CTCGAG	1 cut(s)	173
SmiMI	CAYNNNNRTG	1 cut(s)	278
SmlI	CTYRAG	4 cut(s)	131, 161, 173, 224
SmoI	CTYRAG	4 cut(s)	131, 161, 173, 224
Sse9I	AATT	1 cut(s)	86
SsiI	CCGC	3 cut(s)	21, 24, 375
SspMI	CTAG	1 cut(s)	381
StyD4I	CCNGG	1 cut(s)	104
TaiI	ACGT	1 cut(s)	465
TaqI	TCGA	4 cut(s)	75, 90, 174, 211
TasI	AATT	1 cut(s)	86
TatI	WGTACW	1 cut(s)	332
TauI	GCSGC	1 cut(s)	26
TfiI	GAWTC	1 cut(s)	208
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TseI	GCWGC	3 cut(s)	26, 235, 377
Van91I	CCANNNNNTGG	1 cut(s)	111
Vha464I	CTTAAG	1 cut(s)	161
XapI	RAATTY	1 cut(s)	86
XceI	RCATGY	1 cut(s)	277
XcmI	CCANNNNNNNNNTGG	2 cut(s)	286, 428
XhoI	CTCGAG	1 cut(s)	173
XspI	CTAG	1 cut(s)	381
Zsp2I	ATGCAT	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.