Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0003174

Physical Location & Seq

Genomic Coordinates Reverse (-)

755286 .. 758878

Gene Structure 3593 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g00870.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGCAGCAGAAACTGGAAGCCAGAAAAATGGTGATGGGAAACATGTCAAGGCATTCTATGCTTGCCGTGGAGAATACAAAAAAGAAAGAGGAGCAGCTTAGTATAGAGCTTCGGTCACTATTGGTTGCTGGGACGTCTCTATCTGTTGCTAGGAAGCGGTTGGAGGAGTCCAATCAACTACTTTCCAGAGACAAGGGGTATGTTCATCTTAAAAACTTACAAAAGATGCTAAGAAGGCGACAACAACATATGATATCACAAGTTTCGTTGCTGTATCCTGTAAAGTTCACTATGGGTCCTGCACAAGAACAGGAACTTGAGTCATTTCCAAACACTAATCGATCAGGTAATTCTGCTCGATTTAAGCCTGCAAATCAAGGAACATTGACAATTTTAGGTCTCCATTTGACAATGCTGCCTTTTAAAATGATGAGTTTTTTCACTGACAAAAAGGAGGTTCAGAAGTCTGCAACAGCCCTGGGATATGTCGGTCATGCTGTCTTACTTATAGCTTCCTACTTAAAAGTTCCGTTGCGTTATCCATTGCGTTTGGGTGGTTCCCATTCCTATATTATCGATCATGGACCATCCATAGAGCCTACTTCATCTGATGTGTCGTCATATATAGTGGTTTCAACGGATGTGAAGCATGTGGAGTTCCCTCTCTTTTTAGATGGCCAAGACACAACGAGAGCTGCATATGCTGTATTCTTATTAAACAAGGATTTAGAGCAGCTTTTGAATTACATTGGCGTTAAGAGCTTAGGGCCGCGCCATGTCCTTGCCAATTTGAAGGAGCTTGTAAGGACTATTCAATCTGTAGATTATATAGATACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04140 map04140

Pfam Domains

Protein Families

Atg14

Protein Analysis

280

Amino Acids

31.49

Weight (kDa)

9.69

Isoelectric Point (pI)

47.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32760 AT2G32760 AT2G32760
fragaria_vesca	FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790
malus_domestica	MD00G1113200.v1.1 MD04G1010600.v1.1
prunus_persica	Prupe.1G010300_v2.0.a1 Prupe.1G010300_v2.0.a1 Prupe.1G010300_v2.0.a1
pyrus_communis	pycom04g00870 pycom420g01290
rosa_chinensis	RchiOBHm_Chr4g0414711
rosa_laevigata	RLG00000008122
rosa_multiflora	Rmu_sc0001192.1_g000027 Rmu_sc0010606.1_g000008
rosa_roxburghii	Rroxscaffold_5G00358520
rosa_rugosa	Rorug04G0129800 Rorug04G0129900 Rorug04G0130000 Rorug04G0130100 Rorug04G0130200 Rorug04G0130200 Rorug04G0130200
rosa_samantha	Rh4AG188300 Rh4BG187300 Rh4CG200600 Rh4DG187000
rosa_wichuraiana	Rw4G016070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	137
AccII	CGCG	1 cut(s)	772
AciI	CCGC	2 cut(s)	157, 770
AcoI	YGGCCR	1 cut(s)	676
AcyI	GRCGYC	1 cut(s)	134
AflIII	ACRYGT	1 cut(s)	42
AgsI	TTSAA	4 cut(s)	636, 742, 793, 815
AjnI	CCWGG	1 cut(s)	477
AluBI	AGCT	7 cut(s)	97, 109, 512, 695, 736, 762, 799
AluI	AGCT	7 cut(s)	97, 109, 512, 695, 736, 762, 799
Alw26I	GTCTC	3 cut(s)	141, 183, 404
AlwNI	CAGNNNCTG	1 cut(s)	13
AoxI	GGCC	2 cut(s)	676, 767
ApeKI	GCWGC	5 cut(s)	4, 94, 415, 695, 733
AspLEI	GCGC	1 cut(s)	774
AspS9I	GGNCC	3 cut(s)	296, 584, 767
AsuHPI	GGTGA	1 cut(s)	43
AvaII	GGWCC	2 cut(s)	296, 584
BalI	TGGCCA	1 cut(s)	678
BbvI	GCAGC	5 cut(s)	16, 106, 402, 682, 745
BccI	CCATC	3 cut(s)	28, 595, 668
BceAI	ACGGC	1 cut(s)	50
BciT130I	CCWGG	1 cut(s)	479
BciVI	GTATCC	1 cut(s)	285
BcoDI	GTCTC	3 cut(s)	141, 183, 404
BfaI	CTAG	1 cut(s)	150
BfmI	CTRYAG	1 cut(s)	819
BfuI	GTATCC	1 cut(s)	285
BisI	GCNGC	6 cut(s)	5, 95, 416, 696, 734, 770
BlsI	GCNGC	6 cut(s)	6, 96, 417, 697, 735, 771
Bme1390I	CCNGG	1 cut(s)	479
Bme18I	GGWCC	2 cut(s)	296, 584
BmgT120I	GGNCC	3 cut(s)	296, 584, 767
BmiI	GGNNCC	2 cut(s)	297, 559
BmrFI	CCNGG	1 cut(s)	479
BmsI	GCATC	1 cut(s)	216
Bpu10I	CCTNAGC	1 cut(s)	763
BpuEI	CTTGAG	1 cut(s)	338
Bsa29I	ATCGAT	2 cut(s)	340, 576
BsaAI	YACGTR	1 cut(s)	837
BsaHI	GRCGYC	1 cut(s)	134
BsaI	GGTCTC	1 cut(s)	404
BsaJI	CCNNGG	3 cut(s)	66, 477, 478
Bse1I	ACTGG	1 cut(s)	18
Bse3DI	GCAATG	1 cut(s)	542
BseBI	CCWGG	1 cut(s)	479
BseCI	ATCGAT	2 cut(s)	340, 576
BseDI	CCNNGG	3 cut(s)	66, 477, 478
BseGI	GGATG	2 cut(s)	587, 646
BseMI	GCAATG	1 cut(s)	542
BseNI	ACTGG	1 cut(s)	18
BseRI	GAGGAG	2 cut(s)	104, 179
BseXI	GCAGC	5 cut(s)	16, 106, 402, 682, 745
BseYI	CCCAGC	1 cut(s)	128
BsgI	GTGCAG	1 cut(s)	285
Bsh1236I	CGCG	1 cut(s)	772
BshFI	GGCC	2 cut(s)	678, 769
BshVI	ATCGAT	2 cut(s)	340, 576
BslFI	GGGAC	1 cut(s)	145
BsmAI	GTCTC	3 cut(s)	141, 183, 404
BsmBI	CGTCTC	1 cut(s)	141
BsmFI	GGGAC	1 cut(s)	145
BsmI	GAATGC	1 cut(s)	52
BsnI	GGCC	2 cut(s)	678, 769
Bso31I	GGTCTC	1 cut(s)	404
Bsp143I	GATC	2 cut(s)	341, 577
BspACI	CCGC	2 cut(s)	157, 770
BspANI	GGCC	2 cut(s)	678, 769
BspDI	ATCGAT	2 cut(s)	340, 576
BspFNI	CGCG	1 cut(s)	772
BspLI	GGNNCC	2 cut(s)	297, 559
BspTNI	GGTCTC	1 cut(s)	404
BsrDI	GCAATG	1 cut(s)	542
BsrI	ACTGG	1 cut(s)	18
BssECI	CCNNGG	3 cut(s)	66, 477, 478
BssMI	GATC	2 cut(s)	341, 577
BssNI	GRCGYC	1 cut(s)	134
Bst2UI	CCWGG	1 cut(s)	479
BstACI	GRCGYC	1 cut(s)	134
BstAPI	GCANNNNNTGC	1 cut(s)	58
BstBAI	YACGTR	1 cut(s)	837
BstC8I	GCNNGC	2 cut(s)	63, 369
BstDEI	CTNAG	3 cut(s)	98, 230, 763
BstDSI	CCRYGG	1 cut(s)	66
BstF5I	GGATG	2 cut(s)	587, 646
BstFNI	CGCG	1 cut(s)	772
BstHHI	GCGC	1 cut(s)	774
BstKTI	GATC	2 cut(s)	344, 580
BstMAI	GTCTC	3 cut(s)	141, 183, 404
BstMBI	GATC	2 cut(s)	341, 577
BstMWI	GCNNNNNNNGC	4 cut(s)	58, 235, 701, 759
BstNI	CCWGG	1 cut(s)	479
BstNSI	RCATGY	2 cut(s)	46, 653
BstSCI	CCNGG	1 cut(s)	477
BstSFI	CTRYAG	1 cut(s)	819
BstUI	CGCG	1 cut(s)	772
BstV1I	GCAGC	5 cut(s)	16, 106, 402, 682, 745
BstXI	CCANNNNNNTGG	1 cut(s)	28
Bsu15I	ATCGAT	2 cut(s)	340, 576
BsuI	GTATCC	1 cut(s)	285
BsuRI	GGCC	2 cut(s)	678, 769
BsuTUI	ATCGAT	2 cut(s)	340, 576
BtgI	CCRYGG	1 cut(s)	66
BtsCI	GGATG	2 cut(s)	587, 646
BtsIMutI	CAGTG	1 cut(s)	441
Cac8I	GCNNGC	2 cut(s)	63, 369
CaiI	CAGNNNCTG	1 cut(s)	13
CfoI	GCGC	1 cut(s)	774
Cfr13I	GGNCC	3 cut(s)	296, 584, 767
ClaI	ATCGAT	2 cut(s)	340, 576
CviAII	CATG	5 cut(s)	43, 494, 581, 650, 776
DdeI	CTNAG	3 cut(s)	98, 230, 763
DpnI	GATC	2 cut(s)	343, 579
DpnII	GATC	2 cut(s)	341, 577
DraI	TTTAAA	1 cut(s)	424
EaeI	YGGCCR	1 cut(s)	676
Eco31I	GGTCTC	1 cut(s)	404
Eco32I	GATATC	1 cut(s)	255
Eco47I	GGWCC	2 cut(s)	296, 584
EcoO109I	RGGNCCY	1 cut(s)	296
EcoRII	CCWGG	1 cut(s)	477
EcoRV	GATATC	1 cut(s)	255
Esp3I	CGTCTC	1 cut(s)	141
FaeI	CATG	5 cut(s)	46, 497, 584, 653, 779
FaqI	GGGAC	1 cut(s)	145
FatI	CATG	5 cut(s)	42, 493, 580, 649, 775
FauNDI	CATATG	2 cut(s)	249, 700
Fnu4HI	GCNGC	6 cut(s)	5, 95, 416, 696, 734, 770
FokI	GGATG	2 cut(s)	574, 653
Fsp4HI	GCNGC	6 cut(s)	5, 95, 416, 696, 734, 770
FspBI	CTAG	1 cut(s)	150
GlaI	GCGC	1 cut(s)	773
GluI	GCNGC	6 cut(s)	5, 95, 416, 696, 734, 770
GsaI	CCCAGC	1 cut(s)	132
HaeIII	GGCC	2 cut(s)	678, 769
HhaI	GCGC	1 cut(s)	774
Hin1I	GRCGYC	1 cut(s)	134
Hin1II	CATG	5 cut(s)	46, 497, 584, 653, 779
Hin6I	GCGC	1 cut(s)	772
HinP1I	GCGC	1 cut(s)	772
HinfI	GANTC	2 cut(s)	167, 320
HphI	GGTGA	1 cut(s)	43
Hpy166II	GTNNAC	1 cut(s)	288
Hpy188I	TCNGA	2 cut(s)	462, 610
Hpy188III	TCNNGA	1 cut(s)	186
Hpy8I	GTNNAC	1 cut(s)	288
HpyAV	CCTTC	2 cut(s)	228, 787
HpyCH4IV	ACGT	2 cut(s)	134, 836
HpyCH4V	TGCA	5 cut(s)	4, 302, 371, 470, 698
HpyF10VI	GCNNNNNNNGC	4 cut(s)	58, 235, 701, 759
HpyF3I	CTNAG	3 cut(s)	98, 230, 763
HpySE526I	ACGT	2 cut(s)	134, 836
Hsp92I	GRCGYC	1 cut(s)	134
Hsp92II	CATG	5 cut(s)	46, 497, 584, 653, 779
HspAI	GCGC	1 cut(s)	772
Kzo9I	GATC	2 cut(s)	341, 577
LmnI	GCTCC	2 cut(s)	91, 796
Lsp1109I	GCAGC	5 cut(s)	16, 106, 402, 682, 745
LweI	GCATC	1 cut(s)	216
MaeI	CTAG	1 cut(s)	150
MaeII	ACGT	2 cut(s)	134, 836
MaeIII	GTNAC	1 cut(s)	114
MalI	GATC	2 cut(s)	343, 579
MboI	GATC	2 cut(s)	341, 577
MlsI	TGGCCA	1 cut(s)	678
MluCI	AATT	4 cut(s)	349, 390, 742, 787
MluNI	TGGCCA	1 cut(s)	678
MlyI	GAGTC	2 cut(s)	176, 329
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	4 cut(s)	82, 157, 448, 672
Mox20I	TGGCCA	1 cut(s)	678
MscI	TGGCCA	1 cut(s)	678
MseI	TTAA	6 cut(s)	210, 363, 423, 521, 716, 756
Msp20I	TGGCCA	1 cut(s)	678
MspR9I	CCNGG	1 cut(s)	479
Mva1269I	GAATGC	1 cut(s)	52
MvaI	CCWGG	1 cut(s)	479
MvnI	CGCG	1 cut(s)	772
MwoI	GCNNNNNNNGC	4 cut(s)	58, 235, 701, 759
NdeI	CATATG	2 cut(s)	249, 700
NdeII	GATC	2 cut(s)	341, 577
NlaIII	CATG	5 cut(s)	46, 497, 584, 653, 779
NlaIV	GGNNCC	2 cut(s)	297, 559
NmuCI	GTSAC	1 cut(s)	114
NspI	RCATGY	2 cut(s)	46, 653
PasI	CCCWGGG	1 cut(s)	478
PciI	ACATGT	1 cut(s)	42
PctI	GAATGC	1 cut(s)	52
PkrI	GCNGC	6 cut(s)	6, 96, 417, 697, 735, 771
PleI	GAGTC	2 cut(s)	175, 328
PpsI	GAGTC	2 cut(s)	175, 328
Ppu21I	YACGTR	1 cut(s)	837
PpuMI	RGGWCCY	1 cut(s)	296
PscI	ACATGT	1 cut(s)	42
Psp5II	RGGWCCY	1 cut(s)	296
Psp6I	CCWGG	1 cut(s)	477
PspFI	CCCAGC	1 cut(s)	128
PspGI	CCWGG	1 cut(s)	477
PspN4I	GGNNCC	2 cut(s)	297, 559
PspPI	GGNCC	3 cut(s)	296, 584, 767
PspPPI	RGGWCCY	1 cut(s)	296
PstNI	CAGNNNCTG	1 cut(s)	13
SaqAI	TTAA	6 cut(s)	210, 363, 423, 521, 716, 756
SatI	GCNGC	6 cut(s)	5, 95, 416, 696, 734, 770
Sau3AI	GATC	2 cut(s)	341, 577
Sau96I	GGNCC	3 cut(s)	296, 584, 767
SchI	GAGTC	2 cut(s)	176, 329
ScrFI	CCNGG	1 cut(s)	479
SfaNI	GCATC	1 cut(s)	216
SfcI	CTRYAG	1 cut(s)	819
SinI	GGWCC	2 cut(s)	296, 584
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
Sse9I	AATT	4 cut(s)	349, 390, 742, 787
SsiI	CCGC	2 cut(s)	157, 770
SspMI	CTAG	1 cut(s)	150
StyD4I	CCNGG	1 cut(s)	477
TaiI	ACGT	2 cut(s)	137, 839
TaqI	TCGA	3 cut(s)	340, 358, 576
TaqII	GACCGA	2 cut(s)	102, 479
TasI	AATT	4 cut(s)	349, 390, 742, 787
TauI	GCSGC	1 cut(s)	772
Tru1I	TTAA	6 cut(s)	210, 363, 423, 521, 716, 756
Tru9I	TTAA	6 cut(s)	210, 363, 423, 521, 716, 756
TscAI	CASTG	1 cut(s)	448
TseFI	GTSAC	1 cut(s)	114
TseI	GCWGC	5 cut(s)	4, 94, 415, 695, 733
Tsp45I	GTSAC	1 cut(s)	114
TspDTI	ATGAA	2 cut(s)	194, 594
TspGWI	ACGGA	2 cut(s)	519, 653
TspRI	CASTG	1 cut(s)	448
VpaK11BI	GGWCC	2 cut(s)	296, 584
XceI	RCATGY	2 cut(s)	46, 653
XspI	CTAG	1 cut(s)	150
ZraI	GACGTC	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.