Rorug04G0130000

UV radiation resistance-associated gene

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0003174
Physical Location & Seq
Reverse (-)
20794286 .. 20794753
468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0130000.1

Sequence Viewer

Length: 438 bp
ATGGCGGAGGAGAGGGCGATGGCTCCTCCTACACTAGGAGAGGATGCTATCCACAACTCGTTTTTTTACCTCTATGGTCAACTTTTGTCCAAGAAGGCAGTGGTGATCCGGTCGTTCTCGGCGGCGATCTCCAATGTATGGGGATTGAAGGAGAGGGTTTTGATCCGGCAGGAGGAGGATGATGTCTTCGTCTTCCAATTCAAGGAAAGGGAGGTGAAGAATCGAATCTTGGCTGGGGGTCTATGGTTTTACAACAACTCCATGTTGTTGTTGGCCGACTATGACGACATCTCTGCTCTCGAGGTGGTGCCGCTGCACCTCCTTGAGGTTTGGGTGGCGGTGAAGGGATTGCGCATTGCTATGCGCAACGAGAAAGTGTTAACGTTAATTAGCAGAGCGTTGGGGGGCTTCGTCTGGGTTGATCAGGGGGCAGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 map04140
Pfam Domains
Protein Families
Atg14

Protein Analysis

145

Amino Acids

16.46

Weight (kDa)

5.7

Isoelectric Point (pI)

35.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 24 - 95 2.2e-09 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 353, 365
AccB1I GGYRCC 1 cut(s) 307
AccB7I CCANNNNNTGG 1 cut(s) 138
AciI CCGC 4 cut(s) 5, 122, 311, 338
AclI AACGTT 1 cut(s) 383
AclWI GGATC 2 cut(s) 100, 157
AcoI YGGCCR 1 cut(s) 273
AfiI CCNNNNNNNGG 5 cut(s) 35, 138, 172, 202, 325
AgsI TTSAA 2 cut(s) 148, 202
AjuI GAANNNNNNNTTGG 2 cut(s) 212, 244
AlwI GGATC 2 cut(s) 100, 157
Ama87I CYCGRG 1 cut(s) 299
AoxI GGCC 1 cut(s) 273
ApeKI GCWGC 1 cut(s) 313
AspLEI GCGC 2 cut(s) 354, 366
AsuHPI GGTGA 3 cut(s) 115, 226, 352
AvaI CYCGRG 1 cut(s) 299
BanI GGYRCC 1 cut(s) 307
BbsI GAAGAC 2 cut(s) 178, 184
BbvI GCAGC 1 cut(s) 300
BccI CCATC 1 cut(s) 13
BcgI CGANNNNNNTGC 2 cut(s) 275, 309
BclI TGATCA 1 cut(s) 421
BfaI CTAG 1 cut(s) 35
BisI GCNGC 3 cut(s) 123, 311, 314
BlsI GCNGC 3 cut(s) 124, 312, 315
BmeT110I CYCGRG 1 cut(s) 299
BmiI GGNNCC 2 cut(s) 24, 309
BmsI GCATC 1 cut(s) 34
BpiI GAAGAC 2 cut(s) 178, 184
BpuEI CTTGAG 1 cut(s) 344
BsaWI WCCGGW 1 cut(s) 108
BsaXI ACNNNNNCTCC 2 cut(s) 242, 272
Bsc4I CCNNNNNNNGG 5 cut(s) 35, 138, 172, 202, 325
Bse3DI GCAATG 1 cut(s) 354
BseGI GGATG 2 cut(s) 49, 184
BseLI CCNNNNNNNGG 5 cut(s) 35, 138, 172, 202, 325
BseMI GCAATG 1 cut(s) 354
BseRI GAGGAG 3 cut(s) 15, 23, 188
BseXI GCAGC 1 cut(s) 300
BseYI CCCAGC 1 cut(s) 233
BsgI GTGCAG 1 cut(s) 299
Bsh1285I CGRYCG 1 cut(s) 113
BshFI GGCC 1 cut(s) 275
BshNI GGYRCC 1 cut(s) 307
BsiEI CGRYCG 1 cut(s) 113
BsiHKCI CYCGRG 1 cut(s) 299
BsiSI CCGG 2 cut(s) 109, 166
BslI CCNNNNNNNGG 5 cut(s) 35, 138, 172, 202, 325
BsnI GGCC 1 cut(s) 275
BsoBI CYCGRG 1 cut(s) 299
Bsp143I GATC 4 cut(s) 105, 126, 162, 421
BspACI CCGC 4 cut(s) 5, 122, 311, 338
BspANI GGCC 1 cut(s) 275
BspLI GGNNCC 2 cut(s) 24, 309
BspPI GGATC 2 cut(s) 100, 157
BspT107I GGYRCC 1 cut(s) 307
BsrDI GCAATG 1 cut(s) 354
BssMI GATC 4 cut(s) 105, 126, 162, 421
BstENI CCTNNNNNAGG 2 cut(s) 33, 323
BstF5I GGATG 2 cut(s) 49, 184
BstHHI GCGC 2 cut(s) 354, 366
BstKTI GATC 4 cut(s) 108, 129, 165, 424
BstMBI GATC 4 cut(s) 105, 126, 162, 421
BstMCI CGRYCG 1 cut(s) 113
BstV1I GCAGC 1 cut(s) 300
BstV2I GAAGAC 2 cut(s) 178, 184
BsuRI GGCC 1 cut(s) 275
BtgZI GCGATG 1 cut(s) 32
BtsCI GGATG 2 cut(s) 49, 184
BtsI GCAGTG 2 cut(s) 105, 438
BtsIMutI CAGTG 2 cut(s) 105, 438
CfoI GCGC 2 cut(s) 354, 366
CviAII CATG 1 cut(s) 262
CviJI RGCY 4 cut(s) 23, 233, 275, 408
CviKI_1 RGCY 4 cut(s) 23, 233, 275, 408
DpnI GATC 4 cut(s) 107, 128, 164, 423
DpnII GATC 4 cut(s) 105, 126, 162, 421
EaeI YGGCCR 1 cut(s) 273
EciI GGCGGA 1 cut(s) 20
Eco88I CYCGRG 1 cut(s) 299
EcoNI CCTNNNNNAGG 2 cut(s) 33, 323
FaeI CATG 1 cut(s) 265
FaiI YATR 6 cut(s) 75, 139, 244, 263, 282, 362
FatI CATG 1 cut(s) 261
FbaI TGATCA 1 cut(s) 421
Fnu4HI GCNGC 3 cut(s) 123, 311, 314
FokI GGATG 2 cut(s) 56, 191
Fsp4HI GCNGC 3 cut(s) 123, 311, 314
FspBI CTAG 1 cut(s) 35
FspI TGCGCA 2 cut(s) 353, 365
GlaI GCGC 2 cut(s) 353, 365
GluI GCNGC 3 cut(s) 123, 311, 314
GsaI CCCAGC 1 cut(s) 237
HaeIII GGCC 1 cut(s) 275
HapII CCGG 2 cut(s) 109, 166
HhaI GCGC 2 cut(s) 354, 366
Hin1II CATG 1 cut(s) 265
Hin6I GCGC 2 cut(s) 352, 364
HinP1I GCGC 2 cut(s) 352, 364
HincII GTYRAC 2 cut(s) 80, 381
HindII GTYRAC 2 cut(s) 80, 381
HinfI GANTC 2 cut(s) 220, 225
HpaI GTTAAC 1 cut(s) 381
HpaII CCGG 2 cut(s) 109, 166
HphI GGTGA 3 cut(s) 115, 226, 352
Hpy166II GTNNAC 2 cut(s) 80, 381
Hpy188III TCNNGA 1 cut(s) 299
Hpy8I GTNNAC 2 cut(s) 80, 381
HpyAV CCTTC 3 cut(s) 88, 142, 337
HpyCH4IV ACGT 1 cut(s) 383
HpyCH4V TGCA 1 cut(s) 316
HpySE526I ACGT 1 cut(s) 383
Hsp92II CATG 1 cut(s) 265
HspAI GCGC 2 cut(s) 352, 364
Ksp22I TGATCA 1 cut(s) 421
KspAI GTTAAC 1 cut(s) 381
Kzo9I GATC 4 cut(s) 105, 126, 162, 421
LmnI GCTCC 1 cut(s) 28
LpnPI CCDG 6 cut(s) 122, 155, 179, 219, 400, 410
Lsp1109I GCAGC 1 cut(s) 300
LweI GCATC 1 cut(s) 34
MaeI CTAG 1 cut(s) 35
MaeII ACGT 1 cut(s) 383
MalI GATC 4 cut(s) 107, 128, 164, 423
MboI GATC 4 cut(s) 105, 126, 162, 421
MboII GAAGA 3 cut(s) 178, 184, 229
MluCI AATT 2 cut(s) 197, 387
MseI TTAA 2 cut(s) 380, 386
MslI CAYNNNNRTG 1 cut(s) 359
MspA1I CMGCKG 1 cut(s) 313
MspI CCGG 2 cut(s) 109, 166
NdeII GATC 4 cut(s) 105, 126, 162, 421
NlaIII CATG 1 cut(s) 265
NlaIV GGNNCC 2 cut(s) 24, 309
NmeAIII GCCGAG 1 cut(s) 98
NsbI TGCGCA 2 cut(s) 353, 365
PaeR7I CTCGAG 1 cut(s) 299
PfeI GAWTC 2 cut(s) 220, 225
PflMI CCANNNNNTGG 1 cut(s) 138
PkrI GCNGC 3 cut(s) 124, 312, 315
Psp1406I AACGTT 1 cut(s) 383
PspFI CCCAGC 1 cut(s) 233
PspN4I GGNNCC 2 cut(s) 24, 309
RseI CAYNNNNRTG 1 cut(s) 359
SaqAI TTAA 2 cut(s) 380, 386
SatI GCNGC 3 cut(s) 123, 311, 314
Sau3AI GATC 4 cut(s) 105, 126, 162, 421
SetI ASST 6 cut(s) 72, 216, 306, 321, 330, 386
SfaNI GCATC 1 cut(s) 34
Sfr274I CTCGAG 1 cut(s) 299
SlaI CTCGAG 1 cut(s) 299
SmiMI CAYNNNNRTG 1 cut(s) 359
SmlI CTYRAG 2 cut(s) 299, 323
SmoI CTYRAG 2 cut(s) 299, 323
Sse9I AATT 2 cut(s) 197, 387
SsiI CCGC 4 cut(s) 5, 122, 311, 338
SspMI CTAG 1 cut(s) 35
TaiI ACGT 1 cut(s) 386
TaqI TCGA 2 cut(s) 223, 300
TasI AATT 2 cut(s) 197, 387
TauI GCSGC 2 cut(s) 125, 313
TfiI GAWTC 2 cut(s) 220, 225
Tru1I TTAA 2 cut(s) 380, 386
Tru9I TTAA 2 cut(s) 380, 386
TscAI CASTG 2 cut(s) 105, 438
TseI GCWGC 1 cut(s) 313
TspRI CASTG 2 cut(s) 105, 438
Van91I CCANNNNNTGG 1 cut(s) 138
XagI CCTNNNNNAGG 2 cut(s) 33, 323
XcmI CCANNNNNNNNNTGG 2 cut(s) 97, 268
XhoI CTCGAG 1 cut(s) 299
XspI CTAG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.