Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003174

Physical Location & Seq

Genomic Coordinates Forward (+)

39263604 .. 39268737

Gene Structure 5134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38506

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGAACGAAACCGAACCCCCGCCGCAGCAGAGCCGAACAAGAACAAGAGCGATCCCGAAAAGGTGAAGGTAATCGAATGGGAGGAATTCGACCAGGAGCTTGCCAGGTTGTGGAGTCTGTCTTCTGCGCTCAAGGACGCTCAGGAGAAGAAGCAGAGTCTTAAGCAGAAGCTCGAGTCTCTCATTGAGGTTGAAGCTGAGTCATTGAATCGATCAAATGAGCTTGAGGAGATGCAGCAGAAACTGGAGGCGAGAAAAGTGGTAATGGGAAACATGTCTATGCATTCTATGGTTGCCGTGGAGGATACTAAAAAGAACGAGGGACAGCTTAGTACAGAACTAAGGTCGCTATTGGTTGCTGGGACAGCTCTATCTGCAGCTAGGAAGAAACTGGAGGAGTCAAATCAGCTACTTTCCAGGGACAATGGATATATTCGTCTTAAAAACTTGCAAAAGATGCTAAGAAGAAGACAACAAAATATGATAACACAAGTTTCATTGCTCTATCCTGTAAAGTTCACTATGGGTCCTGCTCACGAACAGGAGCTTGAATCATTTCCTAACACTAGTAGATCAGGTAATTCTGCTCGATTTAAACCTGCAAACCAGGGAACATTGACAATTTTAGGTTTGCATTTGACTATGCTGCCTTTTAAAATGACAAGTTTCTTCACCGACAAGAAAGAGGTTCAGAAGTCTGCAACAGCCCTGGGATACGTCGGTCATGCTGTTTGCCTTATAGCCTCCTACTTAAAAGTTCCTTTGCGTTATCCTTTGCGCTTGGGTGGTTCCCATTCCTATATTATTGATTATGGACCATCCGTAGAGCCTACATCATCTGATTTATCGTCAAATACAGTGGTTTCCACGGATGTGAAACATGTGGAATTCCCTCTCTTTTTAGATGGTCAAGACACAACAAGAGCGGCTTATGCTGTATTCTTACTAAACAAGGATTTAGAACAGCTTCTGAATTACATTGGTGTTAAAAGCTTAGGGCCACGGCATGTCCTGGCCAATTTGAAGGAGCTTATTAGGACAGTTCAGTCTGTAGATTATATTGATACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04140 map04140

Pfam Domains

Protein Families

Atg14

Protein Analysis

356

Amino Acids

40.09

Weight (kDa)

8.86

Isoelectric Point (pI)

46.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32760 AT2G32760 AT2G32760
fragaria_vesca	FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790
malus_domestica	MD00G1113200.v1.1 MD04G1010600.v1.1
prunus_persica	Prupe.1G010300_v2.0.a1 Prupe.1G010300_v2.0.a1 Prupe.1G010300_v2.0.a1
pyrus_communis	pycom04g00870 pycom420g01290
rosa_chinensis	RchiOBHm_Chr4g0414711
rosa_laevigata	RLG00000008122
rosa_multiflora	Rmu_sc0001192.1_g000027 Rmu_sc0010606.1_g000008
rosa_roxburghii	Rroxscaffold_5G00358520
rosa_rugosa	Rorug04G0129800 Rorug04G0129900 Rorug04G0130000 Rorug04G0130100 Rorug04G0130200 Rorug04G0130200 Rorug04G0130200
rosa_samantha	Rh4AG188300 Rh4BG187300 Rh4CG200600 Rh4DG187000
rosa_wichuraiana	Rw4G016070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1045
Acc36I	ACCTGC	1 cut(s)	607
AccB7I	CCANNNNNTGG	1 cut(s)	111
AccBSI	CCGCTC	1 cut(s)	926
AciI	CCGC	3 cut(s)	21, 24, 926
AclWI	GGATC	1 cut(s)	47
AcoI	YGGCCR	1 cut(s)	1014
AcsI	RAATTY	2 cut(s)	86, 887
AfaI	GTAC	1 cut(s)	334
AfiI	CCNNNNNNNGG	1 cut(s)	111
AflII	CTTAAG	1 cut(s)	161
AflIII	ACRYGT	2 cut(s)	273, 880
AgsI	TTSAA	4 cut(s)	194, 208, 551, 1024
AhlI	ACTAGT	1 cut(s)	566
AjnI	CCWGG	6 cut(s)	93, 104, 416, 606, 708, 1011
AleI	CACNNNNGTG	1 cut(s)	872
Alw26I	GTCTC	1 cut(s)	183
AlwI	GGATC	1 cut(s)	47
AlwNI	CAGNNNCTG	2 cut(s)	244, 970
Ama87I	CYCGRG	1 cut(s)	173
AoxI	GGCC	2 cut(s)	998, 1014
ApeKI	GCWGC	4 cut(s)	26, 235, 377, 646
ApoI	RAATTY	2 cut(s)	86, 887
Asp700I	GAANNNNTTC	2 cut(s)	555, 966
AspLEI	GCGC	2 cut(s)	130, 780
AspS9I	GGNCC	3 cut(s)	527, 815, 998
AsuHPI	GGTGA	2 cut(s)	76, 664
AvaI	CYCGRG	1 cut(s)	173
AvaII	GGWCC	2 cut(s)	527, 815
BaeI	ACNNNNGTAYC	2 cut(s)	706, 739
BalI	TGGCCA	1 cut(s)	1016
BbsI	GAAGAC	2 cut(s)	114, 475
BbvI	GCAGC	4 cut(s)	38, 247, 389, 633
BccI	CCATC	2 cut(s)	826, 899
BceAI	ACGGC	2 cut(s)	281, 1019
BciT130I	CCWGG	6 cut(s)	95, 106, 418, 608, 710, 1013
BciVI	GTATCC	2 cut(s)	298, 707
BcoDI	GTCTC	1 cut(s)	183
BcuI	ACTAGT	1 cut(s)	566
BfaI	CTAG	2 cut(s)	381, 567
BfmI	CTRYAG	2 cut(s)	375, 1050
BfrI	CTTAAG	1 cut(s)	161
BfuAI	ACCTGC	1 cut(s)	607
BfuI	GTATCC	2 cut(s)	298, 707
BisI	GCNGC	6 cut(s)	24, 27, 236, 378, 647, 927
BlsI	GCNGC	6 cut(s)	25, 28, 237, 379, 648, 928
Bme1390I	CCNGG	6 cut(s)	95, 106, 418, 608, 710, 1013
Bme18I	GGWCC	2 cut(s)	527, 815
BmeT110I	CYCGRG	1 cut(s)	173
BmgT120I	GGNCC	3 cut(s)	527, 815, 998
BmiI	GGNNCC	2 cut(s)	528, 790
BmrFI	CCNGG	6 cut(s)	95, 106, 418, 608, 710, 1013
BmsI	GCATC	2 cut(s)	222, 447
BpiI	GAAGAC	2 cut(s)	114, 475
BpmI	CTGGAG	2 cut(s)	266, 413
Bpu10I	CCTNAGC	2 cut(s)	141, 994
BpuEI	CTTGAG	2 cut(s)	116, 245
Bsa29I	ATCGAT	1 cut(s)	211
BsaAI	YACGTR	1 cut(s)	1068
BsaJI	CCNNGG	7 cut(s)	297, 417, 607, 708, 709, 867, 1001
Bsc4I	CCNNNNNNNGG	1 cut(s)	111
Bse1I	ACTGG	2 cut(s)	249, 396
Bse3DI	GCAATG	1 cut(s)	497
BseBI	CCWGG	6 cut(s)	95, 106, 418, 608, 710, 1013
BseCI	ATCGAT	1 cut(s)	211
BseDI	CCNNGG	7 cut(s)	297, 417, 607, 708, 709, 867, 1001
BseGI	GGATG	2 cut(s)	818, 877
BseLI	CCNNNNNNNGG	1 cut(s)	111
BseMI	GCAATG	1 cut(s)	497
BseMII	CTCAG	2 cut(s)	155, 189
BseNI	ACTGG	2 cut(s)	249, 396
BseRI	GAGGAG	2 cut(s)	242, 410
BseXI	GCAGC	4 cut(s)	38, 247, 389, 633
BseYI	CCCAGC	1 cut(s)	359
BshFI	GGCC	2 cut(s)	1000, 1016
BshVI	ATCGAT	1 cut(s)	211
BsiHKCI	CYCGRG	1 cut(s)	173
BslFI	GGGAC	3 cut(s)	336, 376, 434
BslI	CCNNNNNNNGG	1 cut(s)	111
BsmAI	GTCTC	1 cut(s)	183
BsmFI	GGGAC	3 cut(s)	336, 376, 434
BsmI	GAATGC	1 cut(s)	283
BsnI	GGCC	2 cut(s)	1000, 1016
BsoBI	CYCGRG	1 cut(s)	173
Bsp143I	GATC	3 cut(s)	52, 212, 572
BspACI	CCGC	3 cut(s)	21, 24, 926
BspANI	GGCC	2 cut(s)	1000, 1016
BspCNI	CTCAG	2 cut(s)	154, 190
BspDI	ATCGAT	1 cut(s)	211
BspLI	GGNNCC	2 cut(s)	528, 790
BspMAI	CTGCAG	1 cut(s)	379
BspMI	ACCTGC	1 cut(s)	607
BspPI	GGATC	1 cut(s)	47
BspTI	CTTAAG	1 cut(s)	161
BsrBI	CCGCTC	1 cut(s)	926
BsrDI	GCAATG	1 cut(s)	497
BsrI	ACTGG	2 cut(s)	249, 396
BssECI	CCNNGG	7 cut(s)	297, 417, 607, 708, 709, 867, 1001
BssMI	GATC	3 cut(s)	52, 212, 572
Bst2UI	CCWGG	6 cut(s)	95, 106, 418, 608, 710, 1013
Bst4CI	ACNGT	2 cut(s)	859, 1042
BstAFI	CTTAAG	1 cut(s)	161
BstAPI	GCANNNNNTGC	1 cut(s)	457
BstBAI	YACGTR	1 cut(s)	1068
BstC8I	GCNNGC	1 cut(s)	102
BstDEI	CTNAG	6 cut(s)	141, 198, 329, 341, 461, 994
BstDSI	CCRYGG	3 cut(s)	297, 867, 1001
BstF5I	GGATG	2 cut(s)	818, 877
BstHHI	GCGC	2 cut(s)	130, 780
BstKTI	GATC	3 cut(s)	55, 215, 575
BstMAI	GTCTC	1 cut(s)	183
BstMBI	GATC	3 cut(s)	52, 212, 572
BstMWI	GCNNNNNNNGC	4 cut(s)	365, 374, 457, 932
BstNI	CCWGG	6 cut(s)	95, 106, 418, 608, 710, 1013
BstNSI	RCATGY	3 cut(s)	277, 884, 1010
BstSCI	CCNGG	6 cut(s)	93, 104, 416, 606, 708, 1011
BstSFI	CTRYAG	2 cut(s)	375, 1050
BstV1I	GCAGC	4 cut(s)	38, 247, 389, 633
BstV2I	GAAGAC	2 cut(s)	114, 475
Bsu15I	ATCGAT	1 cut(s)	211
BsuI	GTATCC	2 cut(s)	298, 707
BsuRI	GGCC	2 cut(s)	1000, 1016
BsuTUI	ATCGAT	1 cut(s)	211
BtgI	CCRYGG	3 cut(s)	297, 867, 1001
BtsCI	GGATG	2 cut(s)	818, 877
BtsIMutI	CAGTG	1 cut(s)	864
BveI	ACCTGC	1 cut(s)	607
Cac8I	GCNNGC	1 cut(s)	102
CaiI	CAGNNNCTG	2 cut(s)	244, 970
CfoI	GCGC	2 cut(s)	130, 780
Cfr13I	GGNCC	3 cut(s)	527, 815, 998
ClaI	ATCGAT	1 cut(s)	211
CseI	GACGC	1 cut(s)	146
Csp6I	GTAC	1 cut(s)	333
CspCI	CAANNNNNGTGG	2 cut(s)	840, 875
CviAII	CATG	4 cut(s)	274, 725, 881, 1007
CviQI	GTAC	1 cut(s)	333
DdeI	CTNAG	6 cut(s)	141, 198, 329, 341, 461, 994
DpnI	GATC	3 cut(s)	54, 214, 574
DpnII	GATC	3 cut(s)	52, 212, 572
DraI	TTTAAA	2 cut(s)	595, 655
DrdI	GACNNNNNNGTC	1 cut(s)	1045
DseDI	GACNNNNNNGTC	1 cut(s)	1045
EaeI	YGGCCR	1 cut(s)	1014
Eco47I	GGWCC	2 cut(s)	527, 815
Eco88I	CYCGRG	1 cut(s)	173
EcoO109I	RGGNCCY	1 cut(s)	527
EcoRI	GAATTC	2 cut(s)	86, 887
EcoRII	CCWGG	6 cut(s)	93, 104, 416, 606, 708, 1011
EcoT22I	ATGCAT	1 cut(s)	285
FaeI	CATG	4 cut(s)	277, 728, 884, 1010
FalI	AAGNNNNNCTT	2 cut(s)	913, 945
FaqI	GGGAC	3 cut(s)	336, 376, 434
FatI	CATG	4 cut(s)	273, 724, 880, 1006
FauI	CCCGC	1 cut(s)	28
Fnu4HI	GCNGC	6 cut(s)	24, 27, 236, 378, 647, 927
FokI	GGATG	2 cut(s)	805, 884
Fsp4HI	GCNGC	6 cut(s)	24, 27, 236, 378, 647, 927
FspBI	CTAG	2 cut(s)	381, 567
GlaI	GCGC	2 cut(s)	129, 779
GluI	GCNGC	6 cut(s)	24, 27, 236, 378, 647, 927
GsaI	CCCAGC	1 cut(s)	363
GsuI	CTGGAG	2 cut(s)	266, 413
HaeIII	GGCC	2 cut(s)	1000, 1016
HgaI	GACGC	1 cut(s)	146
HhaI	GCGC	2 cut(s)	130, 780
Hin1II	CATG	4 cut(s)	277, 728, 884, 1010
Hin6I	GCGC	2 cut(s)	128, 778
HinP1I	GCGC	2 cut(s)	128, 778
HindIII	AAGCTT	1 cut(s)	991
HinfI	GANTC	7 cut(s)	115, 157, 176, 200, 208, 398, 551
HphI	GGTGA	2 cut(s)	76, 664
Hpy166II	GTNNAC	1 cut(s)	519
Hpy188I	TCNGA	3 cut(s)	693, 841, 972
Hpy188III	TCNNGA	4 cut(s)	56, 143, 536, 911
Hpy8I	GTNNAC	1 cut(s)	519
Hpy99I	CGWCG	1 cut(s)	722
HpyAV	CCTTC	2 cut(s)	61, 1018
HpyCH4III	ACNGT	2 cut(s)	859, 1042
HpyCH4IV	ACGT	2 cut(s)	717, 1067
HpyCH4V	TGCA	7 cut(s)	235, 283, 377, 451, 602, 634, 701
HpyF10VI	GCNNNNNNNGC	4 cut(s)	365, 374, 457, 932
HpyF3I	CTNAG	6 cut(s)	141, 198, 329, 341, 461, 994
HpySE526I	ACGT	2 cut(s)	717, 1067
Hsp92II	CATG	4 cut(s)	277, 728, 884, 1010
HspAI	GCGC	2 cut(s)	128, 778
Kzo9I	GATC	3 cut(s)	52, 212, 572
LmnI	GCTCC	3 cut(s)	97, 544, 1027
Lsp1109I	GCAGC	4 cut(s)	38, 247, 389, 633
LweI	GCATC	2 cut(s)	222, 447
MaeI	CTAG	2 cut(s)	381, 567
MaeII	ACGT	2 cut(s)	717, 1067
MalI	GATC	3 cut(s)	54, 214, 574
MbiI	CCGCTC	1 cut(s)	926
MboI	GATC	3 cut(s)	52, 212, 572
MboII	GAAGA	6 cut(s)	114, 160, 397, 477, 480, 661
MlsI	TGGCCA	1 cut(s)	1016
MluCI	AATT	6 cut(s)	86, 580, 621, 887, 973, 1018
MluNI	TGGCCA	1 cut(s)	1016
MlyI	GAGTC	5 cut(s)	124, 166, 185, 209, 407
Mox20I	TGGCCA	1 cut(s)	1016
Mph1103I	ATGCAT	1 cut(s)	285
MroXI	GAANNNNTTC	2 cut(s)	555, 966
MscI	TGGCCA	1 cut(s)	1016
MseI	TTAA	6 cut(s)	162, 441, 594, 654, 752, 987
MslI	CAYNNNNRTG	2 cut(s)	278, 872
Msp20I	TGGCCA	1 cut(s)	1016
MspCI	CTTAAG	1 cut(s)	161
MspR9I	CCNGG	6 cut(s)	95, 106, 418, 608, 710, 1013
Mva1269I	GAATGC	1 cut(s)	283
MvaI	CCWGG	6 cut(s)	95, 106, 418, 608, 710, 1013
MwoI	GCNNNNNNNGC	4 cut(s)	365, 374, 457, 932
NdeII	GATC	3 cut(s)	52, 212, 572
NlaIII	CATG	4 cut(s)	277, 728, 884, 1010
NlaIV	GGNNCC	2 cut(s)	528, 790
NsiI	ATGCAT	1 cut(s)	285
NspI	RCATGY	3 cut(s)	277, 884, 1010
OliI	CACNNNNGTG	1 cut(s)	872
PaeR7I	CTCGAG	1 cut(s)	173
PasI	CCCWGGG	1 cut(s)	709
PciI	ACATGT	2 cut(s)	273, 880
PctI	GAATGC	1 cut(s)	283
PdmI	GAANNNNTTC	2 cut(s)	555, 966
PfeI	GAWTC	2 cut(s)	208, 551
PflMI	CCANNNNNTGG	1 cut(s)	111
PkrI	GCNGC	6 cut(s)	25, 28, 237, 379, 648, 928
PleI	GAGTC	5 cut(s)	123, 165, 184, 208, 406
PpsI	GAGTC	5 cut(s)	123, 165, 184, 208, 406
Ppu21I	YACGTR	1 cut(s)	1068
PpuMI	RGGWCCY	1 cut(s)	527
PscI	ACATGT	2 cut(s)	273, 880
Psp5II	RGGWCCY	1 cut(s)	527
Psp6I	CCWGG	6 cut(s)	93, 104, 416, 606, 708, 1011
PspFI	CCCAGC	1 cut(s)	359
PspGI	CCWGG	6 cut(s)	93, 104, 416, 606, 708, 1011
PspN4I	GGNNCC	2 cut(s)	528, 790
PspPI	GGNCC	3 cut(s)	527, 815, 998
PspPPI	RGGWCCY	1 cut(s)	527
PspXI	VCTCGAGB	1 cut(s)	173
PstI	CTGCAG	1 cut(s)	379
PstNI	CAGNNNCTG	2 cut(s)	244, 970
RsaI	GTAC	1 cut(s)	334
RsaNI	GTAC	1 cut(s)	333
RseI	CAYNNNNRTG	2 cut(s)	278, 872
SaqAI	TTAA	6 cut(s)	162, 441, 594, 654, 752, 987
SatI	GCNGC	6 cut(s)	24, 27, 236, 378, 647, 927
Sau3AI	GATC	3 cut(s)	52, 212, 572
Sau96I	GGNCC	3 cut(s)	527, 815, 998
SchI	GAGTC	5 cut(s)	124, 166, 185, 209, 407
ScrFI	CCNGG	6 cut(s)	95, 106, 418, 608, 710, 1013
SfaNI	GCATC	2 cut(s)	222, 447
SfcI	CTRYAG	2 cut(s)	375, 1050
Sfr274I	CTCGAG	1 cut(s)	173
SinI	GGWCC	2 cut(s)	527, 815
SlaI	CTCGAG	1 cut(s)	173
SmiMI	CAYNNNNRTG	2 cut(s)	278, 872
SmlI	CTYRAG	4 cut(s)	131, 161, 173, 224
SmoI	CTYRAG	4 cut(s)	131, 161, 173, 224
SpeI	ACTAGT	1 cut(s)	566
Sse9I	AATT	6 cut(s)	86, 580, 621, 887, 973, 1018
SsiI	CCGC	3 cut(s)	21, 24, 926
SspMI	CTAG	2 cut(s)	381, 567
StyD4I	CCNGG	6 cut(s)	93, 104, 416, 606, 708, 1011
TaaI	ACNGT	2 cut(s)	859, 1042
TaiI	ACGT	2 cut(s)	720, 1070
TaqI	TCGA	5 cut(s)	75, 90, 174, 211, 589
TaqII	GACCGA	1 cut(s)	710
TasI	AATT	6 cut(s)	86, 580, 621, 887, 973, 1018
TatI	WGTACW	1 cut(s)	332
TauI	GCSGC	2 cut(s)	26, 929
TfiI	GAWTC	2 cut(s)	208, 551
Tru1I	TTAA	6 cut(s)	162, 441, 594, 654, 752, 987
Tru9I	TTAA	6 cut(s)	162, 441, 594, 654, 752, 987
TscAI	CASTG	1 cut(s)	864
TseI	GCWGC	4 cut(s)	26, 235, 377, 646
TspDTI	ATGAA	1 cut(s)	486
TspGWI	ACGGA	2 cut(s)	811, 884
TspRI	CASTG	1 cut(s)	864
Van91I	CCANNNNNTGG	1 cut(s)	111
Vha464I	CTTAAG	1 cut(s)	161
VpaK11BI	GGWCC	2 cut(s)	527, 815
XapI	RAATTY	2 cut(s)	86, 887
XceI	RCATGY	3 cut(s)	277, 884, 1010
XhoI	CTCGAG	1 cut(s)	173
XmnI	GAANNNNTTC	2 cut(s)	555, 966
XspI	CTAG	2 cut(s)	381, 567
Zsp2I	ATGCAT	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.