Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003174

Physical Location & Seq

Genomic Coordinates Reverse (-)

785941 .. 790509

Gene Structure 4569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G010300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGAACGAGACCGAACCCTGTCCGCAGAGCCGAAGAAGAGCGATCCCGAAAATGTGAAGGTGATCGAATGGGAAGAATTCGAGCAAGAGCTTGTGAGGTTGTGGAGTCTTTCTTCTGCGCTCAGCGAAGCTCAGGAGAAGAAACAGAGTCTTCAGCGGAAGCTCGAATCTCTCATTGAGGTTGAAGCTGAGTCATTGAGTCGATCAAATGAGCTTGAGGAGATGCACCAGAAATTGGAGGCTAGAAAAATGGTGTTGGGAAACATGTCGAGGCATTCTATGCTTGCTGTGGAAGATACTAAAAAGAAAGAGGAGCAGCTTAGTATAGAGCTTAGGTCACTATTGGTTGCTGGGACGGCTCTATCAGTTGCTAGGAAGCGGTTGGAGGAATCAAATCGGCTACTTTCCACAGAAAAGGGGTATGTTCGTCTTAAAAACTTGCAAAAGATGCTAAGAAGGAGACAACAACATATGATATCACAAGTTTCATTGCTCTATCCAGTAAAGTTCACTATGGGTCCTGCACAAGAACAGGAACTTGATTCATTTCCTAACACTAGTAGATCAGGTAATTCTGCTCGATTTAAACCTGCAAATCAAGGAACATTGACAATTTTGGGTCTCCATTTAACTATGCTGCCTTTTAAAATGATGAGTTTTTTCACCAACAAGAAGGAGGTTCAGAAGTCTGCAACTGCCCTGGGATATGTCGGTCATGCTGTCTTACTTATAGCTTCCTACTTAAAAGTTCCATTGCGTTATCCATTGCGCTTGGGTGGTTCACATTCCTATATTATTGATTATGGACCATCCGTAGAGGCTACTTCATCTGATTTGTCATCAAATACAGTGGTTTCCACAGATGTGAAGCATGTGGAGTTCCCTCTCTTTTTAGATGGTCAAGACACAACGAGAGCGGCATATGCTGTATTCTTACTAAACAAGGATTTAGAGCAGCTTTTGAATTACATTGGTGTTAAGAGCTTAGGACCACGCCATGTCCTGGCCAATTTGAAGGAGCTTGTAAGGACCATTCAATCTGTAGATTATATAGATACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04140 map04140

Pfam Domains

Protein Families

Atg14

Protein Analysis

354

Amino Acids

40.03

Weight (kDa)

8.96

Isoelectric Point (pI)

54.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32760 AT2G32760 AT2G32760
fragaria_vesca	FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790 FvH4_4g13790
malus_domestica	MD00G1113200.v1.1 MD04G1010600.v1.1
prunus_persica	Prupe.1G010300_v2.0.a1 Prupe.1G010300_v2.0.a1 Prupe.1G010300_v2.0.a1
pyrus_communis	pycom04g00870 pycom420g01290
rosa_chinensis	RchiOBHm_Chr4g0414711
rosa_laevigata	RLG00000008122
rosa_multiflora	Rmu_sc0001192.1_g000027 Rmu_sc0010606.1_g000008
rosa_roxburghii	Rroxscaffold_5G00358520
rosa_rugosa	Rorug04G0129800 Rorug04G0129900 Rorug04G0130000 Rorug04G0130100 Rorug04G0130200 Rorug04G0130200 Rorug04G0130200
rosa_samantha	Rh4AG188300 Rh4BG187300 Rh4CG200600 Rh4DG187000
rosa_wichuraiana	Rw4G016070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	598
AccB7I	CCANNNNNTGG	2 cut(s)	235, 1003
AccBSI	CCGCTC	1 cut(s)	917
AciI	CCGC	4 cut(s)	24, 157, 379, 917
AclWI	GGATC	1 cut(s)	38
AcoI	YGGCCR	1 cut(s)	1005
AcsI	RAATTY	1 cut(s)	77
AcuI	CTGAAG	1 cut(s)	137
AfiI	CCNNNNNNNGG	2 cut(s)	235, 1003
AflIII	ACRYGT	1 cut(s)	264
AgsI	TTSAA	4 cut(s)	185, 964, 1015, 1037
AhlI	ACTAGT	1 cut(s)	557
AjnI	CCWGG	2 cut(s)	699, 1002
AleI	CACNNNNGTG	1 cut(s)	863
Alw26I	GTCTC	3 cut(s)	3, 454, 626
AlwI	GGATC	1 cut(s)	38
AoxI	GGCC	1 cut(s)	1005
ApeKI	GCWGC	3 cut(s)	316, 637, 955
ApoI	RAATTY	1 cut(s)	77
AspLEI	GCGC	2 cut(s)	121, 771
AspS9I	GGNCC	4 cut(s)	518, 806, 989, 1029
AsuHPI	GGTGA	2 cut(s)	73, 655
AvaII	GGWCC	4 cut(s)	518, 806, 989, 1029
BalI	TGGCCA	1 cut(s)	1007
BbsI	GAAGAC	1 cut(s)	143
BbvI	GCAGC	3 cut(s)	328, 624, 967
BccI	CCATC	2 cut(s)	817, 890
BceAI	ACGGC	1 cut(s)	372
BciT130I	CCWGG	2 cut(s)	701, 1004
BcoDI	GTCTC	3 cut(s)	3, 454, 626
BcuI	ACTAGT	1 cut(s)	557
BfaI	CTAG	3 cut(s)	243, 372, 558
BfmI	CTRYAG	1 cut(s)	1041
BfuAI	ACCTGC	1 cut(s)	598
BisI	GCNGC	4 cut(s)	317, 638, 918, 956
BlpI	GCTNAGC	1 cut(s)	122
BlsI	GCNGC	4 cut(s)	318, 639, 919, 957
Bme1390I	CCNGG	2 cut(s)	701, 1004
Bme18I	GGWCC	4 cut(s)	518, 806, 989, 1029
BmgT120I	GGNCC	4 cut(s)	518, 806, 989, 1029
BmiI	GGNNCC	1 cut(s)	519
BmrFI	CCNGG	2 cut(s)	701, 1004
BmsI	GCATC	2 cut(s)	213, 438
BpiI	GAAGAC	1 cut(s)	143
Bpu10I	CCTNAGC	3 cut(s)	132, 332, 985
Bpu1102I	GCTNAGC	1 cut(s)	122
BpuEI	CTTGAG	1 cut(s)	236
BsaAI	YACGTR	1 cut(s)	1059
BsaI	GGTCTC	2 cut(s)	3, 626
BsaJI	CCNNGG	2 cut(s)	699, 700
Bsc4I	CCNNNNNNNGG	2 cut(s)	235, 1003
Bse1I	ACTGG	1 cut(s)	500
Bse3DI	GCAATG	3 cut(s)	488, 752, 764
BseBI	CCWGG	2 cut(s)	701, 1004
BseDI	CCNNGG	2 cut(s)	699, 700
BseGI	GGATG	1 cut(s)	809
BseLI	CCNNNNNNNGG	2 cut(s)	235, 1003
BseMI	GCAATG	3 cut(s)	488, 752, 764
BseMII	CTCAG	3 cut(s)	136, 146, 180
BseNI	ACTGG	1 cut(s)	500
BseRI	GAGGAG	2 cut(s)	233, 326
BseXI	GCAGC	3 cut(s)	328, 624, 967
BseYI	CCCAGC	1 cut(s)	350
BsgI	GTGCAG	1 cut(s)	507
BshFI	GGCC	1 cut(s)	1007
BslFI	GGGAC	1 cut(s)	367
BslI	CCNNNNNNNGG	2 cut(s)	235, 1003
BsmAI	GTCTC	3 cut(s)	3, 454, 626
BsmFI	GGGAC	1 cut(s)	367
BsmI	GAATGC	1 cut(s)	274
BsnI	GGCC	1 cut(s)	1007
Bso31I	GGTCTC	2 cut(s)	3, 626
Bsp143I	GATC	4 cut(s)	43, 63, 203, 563
Bsp1720I	GCTNAGC	1 cut(s)	122
BspACI	CCGC	4 cut(s)	24, 157, 379, 917
BspANI	GGCC	1 cut(s)	1007
BspCNI	CTCAG	3 cut(s)	135, 145, 181
BspLI	GGNNCC	1 cut(s)	519
BspMI	ACCTGC	1 cut(s)	598
BspPI	GGATC	1 cut(s)	38
BspQI	GCTCTTC	1 cut(s)	32
BspTNI	GGTCTC	2 cut(s)	3, 626
BsrBI	CCGCTC	1 cut(s)	917
BsrDI	GCAATG	3 cut(s)	488, 752, 764
BsrI	ACTGG	1 cut(s)	500
BssECI	CCNNGG	2 cut(s)	699, 700
BssMI	GATC	4 cut(s)	43, 63, 203, 563
Bst2UI	CCWGG	2 cut(s)	701, 1004
Bst4CI	ACNGT	1 cut(s)	850
Bst6I	CTCTTC	1 cut(s)	32
BstAPI	GCANNNNNTGC	2 cut(s)	280, 448
BstBAI	YACGTR	1 cut(s)	1059
BstC8I	GCNNGC	1 cut(s)	285
BstDEI	CTNAG	7 cut(s)	122, 132, 189, 320, 332, 452, 985
BstF5I	GGATG	1 cut(s)	809
BstHHI	GCGC	2 cut(s)	121, 771
BstKTI	GATC	4 cut(s)	46, 66, 206, 566
BstMAI	GTCTC	3 cut(s)	3, 454, 626
BstMBI	GATC	4 cut(s)	43, 63, 203, 563
BstMWI	GCNNNNNNNGC	4 cut(s)	280, 356, 448, 923
BstNI	CCWGG	2 cut(s)	701, 1004
BstNSI	RCATGY	2 cut(s)	268, 875
BstSCI	CCNGG	2 cut(s)	699, 1002
BstSFI	CTRYAG	1 cut(s)	1041
BstV1I	GCAGC	3 cut(s)	328, 624, 967
BstV2I	GAAGAC	1 cut(s)	143
BsuRI	GGCC	1 cut(s)	1007
BtsCI	GGATG	1 cut(s)	809
BtsIMutI	CAGTG	1 cut(s)	855
BveI	ACCTGC	1 cut(s)	598
Cac8I	GCNNGC	1 cut(s)	285
CfoI	GCGC	2 cut(s)	121, 771
Cfr13I	GGNCC	4 cut(s)	518, 806, 989, 1029
CspCI	CAANNNNNGTGG	2 cut(s)	831, 866
CviAII	CATG	4 cut(s)	265, 716, 872, 998
DdeI	CTNAG	7 cut(s)	122, 132, 189, 320, 332, 452, 985
DpnI	GATC	4 cut(s)	45, 65, 205, 565
DpnII	GATC	4 cut(s)	43, 63, 203, 563
DraI	TTTAAA	2 cut(s)	586, 646
EaeI	YGGCCR	1 cut(s)	1005
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
Eco31I	GGTCTC	2 cut(s)	3, 626
Eco32I	GATATC	1 cut(s)	477
Eco47I	GGWCC	4 cut(s)	518, 806, 989, 1029
Eco57I	CTGAAG	1 cut(s)	137
EcoO109I	RGGNCCY	1 cut(s)	518
EcoRI	GAATTC	1 cut(s)	77
EcoRII	CCWGG	2 cut(s)	699, 1002
EcoRV	GATATC	1 cut(s)	477
FaeI	CATG	4 cut(s)	268, 719, 875, 1001
FaqI	GGGAC	1 cut(s)	367
FatI	CATG	4 cut(s)	264, 715, 871, 997
FauNDI	CATATG	2 cut(s)	471, 922
Fnu4HI	GCNGC	4 cut(s)	317, 638, 918, 956
FokI	GGATG	1 cut(s)	796
Fsp4HI	GCNGC	4 cut(s)	317, 638, 918, 956
FspBI	CTAG	3 cut(s)	243, 372, 558
GlaI	GCGC	2 cut(s)	120, 770
GluI	GCNGC	4 cut(s)	317, 638, 918, 956
GsaI	CCCAGC	1 cut(s)	354
HaeIII	GGCC	1 cut(s)	1007
HhaI	GCGC	2 cut(s)	121, 771
Hin1II	CATG	4 cut(s)	268, 719, 875, 1001
Hin6I	GCGC	2 cut(s)	119, 769
HinP1I	GCGC	2 cut(s)	119, 769
HinfI	GANTC	7 cut(s)	106, 148, 167, 191, 199, 389, 542
HphI	GGTGA	2 cut(s)	73, 655
Hpy166II	GTNNAC	2 cut(s)	510, 782
Hpy188I	TCNGA	2 cut(s)	684, 832
Hpy188III	TCNNGA	3 cut(s)	47, 134, 902
Hpy8I	GTNNAC	2 cut(s)	510, 782
HpyAV	CCTTC	4 cut(s)	52, 450, 667, 1009
HpyCH4III	ACNGT	1 cut(s)	850
HpyCH4IV	ACGT	1 cut(s)	1058
HpyCH4V	TGCA	5 cut(s)	226, 442, 524, 593, 692
HpyF10VI	GCNNNNNNNGC	4 cut(s)	280, 356, 448, 923
HpyF3I	CTNAG	7 cut(s)	122, 132, 189, 320, 332, 452, 985
HpySE526I	ACGT	1 cut(s)	1058
Hsp92II	CATG	4 cut(s)	268, 719, 875, 1001
HspAI	GCGC	2 cut(s)	119, 769
Kzo9I	GATC	4 cut(s)	43, 63, 203, 563
LguI	GCTCTTC	1 cut(s)	32
LmnI	GCTCC	2 cut(s)	313, 1018
Lsp1109I	GCAGC	3 cut(s)	328, 624, 967
LweI	GCATC	2 cut(s)	213, 438
MaeI	CTAG	3 cut(s)	243, 372, 558
MaeII	ACGT	1 cut(s)	1058
MaeIII	GTNAC	1 cut(s)	336
MalI	GATC	4 cut(s)	45, 65, 205, 565
MbiI	CCGCTC	1 cut(s)	917
MboI	GATC	4 cut(s)	43, 63, 203, 563
MboII	GAAGA	7 cut(s)	46, 49, 86, 105, 143, 151, 305
MlsI	TGGCCA	1 cut(s)	1007
MluCI	AATT	6 cut(s)	77, 233, 571, 612, 964, 1009
MluNI	TGGCCA	1 cut(s)	1007
MlyI	GAGTC	4 cut(s)	115, 157, 200, 208
MmeI	TCCRAC	1 cut(s)	363
Mox20I	TGGCCA	1 cut(s)	1007
MscI	TGGCCA	1 cut(s)	1007
MseI	TTAA	6 cut(s)	432, 585, 629, 645, 743, 978
MslI	CAYNNNNRTG	1 cut(s)	863
Msp20I	TGGCCA	1 cut(s)	1007
MspA1I	CMGCKG	1 cut(s)	157
MspR9I	CCNGG	2 cut(s)	701, 1004
Mva1269I	GAATGC	1 cut(s)	274
MvaI	CCWGG	2 cut(s)	701, 1004
MwoI	GCNNNNNNNGC	4 cut(s)	280, 356, 448, 923
NdeI	CATATG	2 cut(s)	471, 922
NdeII	GATC	4 cut(s)	43, 63, 203, 563
NlaIII	CATG	4 cut(s)	268, 719, 875, 1001
NlaIV	GGNNCC	1 cut(s)	519
NmuCI	GTSAC	1 cut(s)	336
NspI	RCATGY	2 cut(s)	268, 875
OliI	CACNNNNGTG	1 cut(s)	863
PasI	CCCWGGG	1 cut(s)	700
PciI	ACATGT	1 cut(s)	264
PciSI	GCTCTTC	1 cut(s)	32
PctI	GAATGC	1 cut(s)	274
PfeI	GAWTC	3 cut(s)	167, 389, 542
PflMI	CCANNNNNTGG	2 cut(s)	235, 1003
PkrI	GCNGC	4 cut(s)	318, 639, 919, 957
PleI	GAGTC	4 cut(s)	114, 156, 199, 207
PpsI	GAGTC	4 cut(s)	114, 156, 199, 207
Ppu21I	YACGTR	1 cut(s)	1059
PpuMI	RGGWCCY	1 cut(s)	518
PscI	ACATGT	1 cut(s)	264
Psp5II	RGGWCCY	1 cut(s)	518
Psp6I	CCWGG	2 cut(s)	699, 1002
PspFI	CCCAGC	1 cut(s)	350
PspGI	CCWGG	2 cut(s)	699, 1002
PspN4I	GGNNCC	1 cut(s)	519
PspPI	GGNCC	4 cut(s)	518, 806, 989, 1029
PspPPI	RGGWCCY	1 cut(s)	518
RseI	CAYNNNNRTG	1 cut(s)	863
SapI	GCTCTTC	1 cut(s)	32
SaqAI	TTAA	6 cut(s)	432, 585, 629, 645, 743, 978
SatI	GCNGC	4 cut(s)	317, 638, 918, 956
Sau3AI	GATC	4 cut(s)	43, 63, 203, 563
Sau96I	GGNCC	4 cut(s)	518, 806, 989, 1029
SchI	GAGTC	4 cut(s)	115, 157, 200, 208
ScrFI	CCNGG	2 cut(s)	701, 1004
SfaNI	GCATC	2 cut(s)	213, 438
SfcI	CTRYAG	1 cut(s)	1041
SinI	GGWCC	4 cut(s)	518, 806, 989, 1029
SmiMI	CAYNNNNRTG	1 cut(s)	863
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
SpeI	ACTAGT	1 cut(s)	557
Sse9I	AATT	6 cut(s)	77, 233, 571, 612, 964, 1009
SsiI	CCGC	4 cut(s)	24, 157, 379, 917
SspMI	CTAG	3 cut(s)	243, 372, 558
StyD4I	CCNGG	2 cut(s)	699, 1002
TaaI	ACNGT	1 cut(s)	850
TaiI	ACGT	1 cut(s)	1061
TaqI	TCGA	6 cut(s)	66, 81, 165, 202, 269, 580
TaqII	GACCGA	2 cut(s)	27, 701
TasI	AATT	6 cut(s)	77, 233, 571, 612, 964, 1009
TauI	GCSGC	1 cut(s)	920
TfiI	GAWTC	3 cut(s)	167, 389, 542
Tru1I	TTAA	6 cut(s)	432, 585, 629, 645, 743, 978
Tru9I	TTAA	6 cut(s)	432, 585, 629, 645, 743, 978
TscAI	CASTG	1 cut(s)	855
TseFI	GTSAC	1 cut(s)	336
TseI	GCWGC	3 cut(s)	316, 637, 955
Tsp45I	GTSAC	1 cut(s)	336
TspDTI	ATGAA	3 cut(s)	477, 534, 816
TspGWI	ACGGA	1 cut(s)	802
TspRI	CASTG	1 cut(s)	855
Van91I	CCANNNNNTGG	2 cut(s)	235, 1003
VpaK11BI	GGWCC	4 cut(s)	518, 806, 989, 1029
XapI	RAATTY	1 cut(s)	77
XceI	RCATGY	2 cut(s)	268, 875
XspI	CTAG	3 cut(s)	243, 372, 558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.