Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0009614

Physical Location & Seq

Genomic Coordinates Reverse (-)

23434993 .. 23435280

Gene Structure 288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0141500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGTCAATGCCAAGGCCACAACTATCAGTCACCATCCGAATTTTGGAGGCACCGGTGGCTCCTATGGTAGCTGTAAGTGGAGTGAGGAGGAAACATGATGGATTGGATGACTTCTCACTTCGGAAACCTAAACTTAGTATAGCAGTTGCCAAGACTAATCTAGATGTTGTGTCTATGGGTTTAGTACTAGTGTCCACAGCTCAAGATGTTCCAGAAAAGAGAGGGCGTTGCAGAGACGCTAAGAACAAGAAAACTGCTCAGGTGAAACCAAAAAACCCTCTCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0006950 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0010035 GO:0042221 GO:0042493 GO:0042542 GO:0046677 GO:0050896 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04530 ko04612 map04530 map04612

Pfam Domains

Protein Families

HSP70

Protein Analysis

95

Amino Acids

10.4

Weight (kDa)

10.54

Isoelectric Point (pI)

44.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32120 AT2G32120
fragaria_vesca	FvH4_4g15410
malus_domestica	MD13G1191900.v1.1 MD16G1192600.v1.1
prunus_persica	Prupe.1G012200_v2.0.a1 Prupe.1G012200_v2.0.a1
pyrus_communis	pycom16g16230
rosa_chinensis	RchiOBHm_Chr4g0416401
rosa_laevigata	RLG00000007987 RLG00000012228
rosa_multiflora	Rmu_sc0001488.1_g000019
rosa_roxburghii	Rroxscaffold_5G00360230
rosa_rugosa	Rorug04G0141500 Rorug06G0211600
rosa_samantha	Rh4AG203900 Rh4BG201300 Rh4DG201200 Rh6BG329300 Rh6DG322200
rosa_wichuraiana	Rw4G017260 Rw6G027800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	49
AcsI	RAATTY	1 cut(s)	39
AfaI	GTAC	1 cut(s)	186
AfiI	CCNNNNNNNGG	1 cut(s)	43
AgeI	ACCGGT	1 cut(s)	52
AhlI	ACTAGT	1 cut(s)	187
AluBI	AGCT	2 cut(s)	71, 200
AluI	AGCT	2 cut(s)	71, 200
Alw26I	GTCTC	1 cut(s)	228
AoxI	GGCC	1 cut(s)	14
ApoI	RAATTY	1 cut(s)	39
AsiGI	ACCGGT	1 cut(s)	52
AsuHPI	GGTGA	2 cut(s)	22, 274
BanI	GGYRCC	1 cut(s)	49
BccI	CCATC	2 cut(s)	41, 92
BcoDI	GTCTC	1 cut(s)	228
BcuI	ACTAGT	1 cut(s)	187
BfaI	CTAG	2 cut(s)	161, 188
BmcAI	AGTACT	1 cut(s)	186
BmiI	GGNNCC	2 cut(s)	51, 60
Bpu10I	CCTNAGC	1 cut(s)	258
BpuEI	CTTGAG	1 cut(s)	186
BsaJI	CCNNGG	1 cut(s)	11
BsaWI	WCCGGW	1 cut(s)	52
Bsc4I	CCNNNNNNNGG	1 cut(s)	43
Bse118I	RCCGGY	1 cut(s)	52
BseDI	CCNNGG	1 cut(s)	11
BseGI	GGATG	2 cut(s)	33, 112
BseLI	CCNNNNNNNGG	1 cut(s)	43
BseMII	CTCAG	1 cut(s)	272
BseRI	GAGGAG	1 cut(s)	100
BshFI	GGCC	1 cut(s)	16
BshNI	GGYRCC	1 cut(s)	49
BshTI	ACCGGT	1 cut(s)	52
BsiSI	CCGG	1 cut(s)	53
BslI	CCNNNNNNNGG	1 cut(s)	43
BsmAI	GTCTC	1 cut(s)	228
BsmBI	CGTCTC	1 cut(s)	228
BsnI	GGCC	1 cut(s)	16
BspANI	GGCC	1 cut(s)	16
BspCNI	CTCAG	1 cut(s)	271
BspLI	GGNNCC	2 cut(s)	51, 60
BspT107I	GGYRCC	1 cut(s)	49
BsrFI	RCCGGY	1 cut(s)	52
BssAI	RCCGGY	1 cut(s)	52
BssECI	CCNNGG	1 cut(s)	11
BssT1I	CCWWGG	1 cut(s)	11
BstDEI	CTNAG	3 cut(s)	134, 240, 258
BstF5I	GGATG	2 cut(s)	33, 112
BstMAI	GTCTC	1 cut(s)	228
BstMWI	GCNNNNNNNGC	1 cut(s)	56
BsuRI	GGCC	1 cut(s)	16
BtsCI	GGATG	2 cut(s)	33, 112
Cfr10I	RCCGGY	1 cut(s)	52
CseI	GACGC	1 cut(s)	245
Csp6I	GTAC	1 cut(s)	185
CspAI	ACCGGT	1 cut(s)	52
CviAII	CATG	1 cut(s)	95
CviJI	RGCY	4 cut(s)	16, 59, 71, 200
CviKI_1	RGCY	4 cut(s)	16, 59, 71, 200
CviQI	GTAC	1 cut(s)	185
DdeI	CTNAG	3 cut(s)	134, 240, 258
Eco130I	CCWWGG	1 cut(s)	11
EcoT14I	CCWWGG	1 cut(s)	11
ErhI	CCWWGG	1 cut(s)	11
Esp3I	CGTCTC	1 cut(s)	228
FaeI	CATG	1 cut(s)	98
FaiI	YATR	4 cut(s)	65, 96, 140, 176
FatI	CATG	1 cut(s)	94
FokI	GGATG	2 cut(s)	20, 119
FspBI	CTAG	2 cut(s)	161, 188
HaeIII	GGCC	1 cut(s)	16
HapII	CCGG	1 cut(s)	53
HgaI	GACGC	1 cut(s)	245
Hin1II	CATG	1 cut(s)	98
HpaII	CCGG	1 cut(s)	53
HphI	GGTGA	2 cut(s)	22, 274
Hpy166II	GTNNAC	1 cut(s)	195
Hpy188I	TCNGA	2 cut(s)	38, 123
Hpy188III	TCNNGA	3 cut(s)	161, 203, 212
Hpy8I	GTNNAC	1 cut(s)	195
HpyCH4V	TGCA	1 cut(s)	231
HpyF10VI	GCNNNNNNNGC	1 cut(s)	56
HpyF3I	CTNAG	3 cut(s)	134, 240, 258
Hsp92II	CATG	1 cut(s)	98
LmnI	GCTCC	1 cut(s)	64
LpnPI	CCDG	3 cut(s)	66, 225, 245
MaeI	CTAG	2 cut(s)	161, 188
MaeIII	GTNAC	1 cut(s)	28
MluCI	AATT	1 cut(s)	39
MnlI	CCTC	5 cut(s)	40, 78, 81, 215, 288
MspI	CCGG	1 cut(s)	53
MwoI	GCNNNNNNNGC	1 cut(s)	56
NlaIII	CATG	1 cut(s)	98
NlaIV	GGNNCC	2 cut(s)	51, 60
NmuCI	GTSAC	1 cut(s)	28
PinAI	ACCGGT	1 cut(s)	52
PspN4I	GGNNCC	2 cut(s)	51, 60
RsaI	GTAC	1 cut(s)	186
RsaNI	GTAC	1 cut(s)	185
ScaI	AGTACT	1 cut(s)	186
SetI	ASST	4 cut(s)	73, 130, 202, 264
SgrAI	CRCCGGYG	1 cut(s)	52
SmlI	CTYRAG	1 cut(s)	201
SmoI	CTYRAG	1 cut(s)	201
SpeI	ACTAGT	1 cut(s)	187
Sse9I	AATT	1 cut(s)	39
SspMI	CTAG	2 cut(s)	161, 188
StyI	CCWWGG	1 cut(s)	11
TasI	AATT	1 cut(s)	39
TatI	WGTACW	1 cut(s)	184
TseFI	GTSAC	1 cut(s)	28
Tsp45I	GTSAC	1 cut(s)	28
XapI	RAATTY	1 cut(s)	39
XbaI	TCTAGA	1 cut(s)	160
XcmI	CCANNNNNNNNNTGG	1 cut(s)	40
XspI	CTAG	2 cut(s)	161, 188
ZrmI	AGTACT	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.