Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0012799

Physical Location & Seq

Genomic Coordinates Forward (+)

34310196 .. 34311939

Gene Structure 1744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0197100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGGGAATTGGGTTGGGAAGGAAAGGGCTGTTCACCCAGACCCAGTTGATGAAGATGAAGGACTACATGGTGTTGGATCAAAAAGTCTGATGAGAATTAAGGTGCGGATGACTAAAAGAGAGCTCAAGGAGTTGATGGCGCAGGTAGACATGACCAACGGCGGCGATAACTCGGAGAAGCTAGGCGGCTTGATCCTGAAAGAATTCTTGGAAGGTAGGCTCTGTGCTCGTGTTGTCGCTGTTGCTGCTGATGAAGATAGTGATCCAAAGGTATCAAAATATGTGAAGGGTTGGTATCAACATGTTGAGCACCAGTTCAGAAGAAGAAGAGCACCATCTTCTGTTGTAATTAAGCTTTTAAAGTTACAATATTATCGTTTCAGTTCAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0007275 GO:0008150 GO:0009505 GO:0009791 GO:0010154 GO:0010214 GO:0016787 GO:0016798 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0044464 GO:0046556 GO:0048046 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Fn3-like Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

130

Amino Acids

14.8

Weight (kDa)

9.41

Isoelectric Point (pI)

24.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49360
fragaria_vesca	FvH4_4g19350
malus_domestica	MD13G1157400.v1.1 MD16G1158300.v1.1
prunus_persica	Prupe.1G123100_v2.0.a1
pyrus_communis	pycom16g13320
rosa_chinensis	RchiOBHm_Chr4g0424381
rosa_laevigata	RLG00000007479
rosa_multiflora	Rmu_co8330357.1_g000001 Rmu_sc0003567.1_g000021 Rmu_sc0005995.1_g000003
rosa_roxburghii	Rroxscaffold_5G00366330
rosa_rugosa	Rorug04G0197100 Rorug04G0197200
rosa_samantha	Rh4AG253200 Rh4CG269900 Rh4DG253000
rosa_wichuraiana	Rw4G021850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	133
AccI	GTMKAC	1 cut(s)	147
AciI	CCGC	3 cut(s)	106, 162, 186
AclWI	GGATC	3 cut(s)	85, 187, 257
AcsI	RAATTY	1 cut(s)	203
AflIII	ACRYGT	1 cut(s)	301
AjuI	GAANNNNNNNTTGG	2 cut(s)	191, 223
AluBI	AGCT	3 cut(s)	124, 181, 355
AluI	AGCT	3 cut(s)	124, 181, 355
Alw21I	GWGCWC	4 cut(s)	126, 229, 312, 334
AlwI	GGATC	3 cut(s)	85, 187, 257
ApeKI	GCWGC	1 cut(s)	245
ApoI	RAATTY	1 cut(s)	203
Asp700I	GAANNNNTTC	1 cut(s)	203
AspLEI	GCGC	1 cut(s)	142
AsuHPI	GGTGA	1 cut(s)	26
BanII	GRGCYC	1 cut(s)	126
BauI	CACGAG	1 cut(s)	228
Bbv12I	GWGCWC	4 cut(s)	126, 229, 312, 334
BbvI	GCAGC	1 cut(s)	232
BccI	CCATC	2 cut(s)	130, 343
BceAI	ACGGC	1 cut(s)	175
BfaI	CTAG	1 cut(s)	182
BfuAI	ACCTGC	1 cut(s)	133
BisI	GCNGC	3 cut(s)	163, 187, 246
BlsI	GCNGC	3 cut(s)	164, 188, 247
BmrI	ACTGGG	1 cut(s)	38
BmuI	ACTGGG	1 cut(s)	38
BpuEI	CTTGAG	1 cut(s)	110
BsaBI	GATNNNNATC	1 cut(s)	261
Bse1I	ACTGG	2 cut(s)	44, 313
Bse8I	GATNNNNATC	1 cut(s)	261
BseGI	GGATG	1 cut(s)	114
BseJI	GATNNNNATC	1 cut(s)	261
BseNI	ACTGG	2 cut(s)	44, 313
BseXI	GCAGC	1 cut(s)	232
BsiHKAI	GWGCWC	4 cut(s)	126, 229, 312, 334
Bsp1286I	GDGCHC	4 cut(s)	126, 229, 312, 334
Bsp143I	GATC	3 cut(s)	77, 192, 262
BspACI	CCGC	3 cut(s)	106, 162, 186
BspMI	ACCTGC	1 cut(s)	133
BspPI	GGATC	3 cut(s)	85, 187, 257
BspQI	GCTCTTC	1 cut(s)	322
BsrI	ACTGG	2 cut(s)	44, 313
BssMI	GATC	3 cut(s)	77, 192, 262
BssSI	CACGAG	1 cut(s)	228
Bst2BI	CACGAG	1 cut(s)	228
Bst6I	CTCTTC	1 cut(s)	322
BstF5I	GGATG	1 cut(s)	114
BstHHI	GCGC	1 cut(s)	142
BstKTI	GATC	3 cut(s)	80, 195, 265
BstMBI	GATC	3 cut(s)	77, 192, 262
BstMWI	GCNNNNNNNGC	1 cut(s)	245
BstNSI	RCATGY	1 cut(s)	305
BstV1I	GCAGC	1 cut(s)	232
BtsCI	GGATG	1 cut(s)	114
BveI	ACCTGC	1 cut(s)	133
CfoI	GCGC	1 cut(s)	142
CviAII	CATG	3 cut(s)	68, 151, 302
CviJI	RGCY	6 cut(s)	29, 124, 181, 189, 220, 355
CviKI_1	RGCY	6 cut(s)	29, 124, 181, 189, 220, 355
DpnI	GATC	3 cut(s)	79, 194, 264
DpnII	GATC	3 cut(s)	77, 192, 262
DraI	TTTAAA	1 cut(s)	360
Eam1104I	CTCTTC	1 cut(s)	322
EarI	CTCTTC	1 cut(s)	322
Ecl136II	GAGCTC	1 cut(s)	124
Eco24I	GRGCYC	1 cut(s)	126
Eco53kI	GAGCTC	1 cut(s)	124
EcoICRI	GAGCTC	1 cut(s)	124
EcoRI	GAATTC	1 cut(s)	203
EcoT38I	GRGCYC	1 cut(s)	126
FaeI	CATG	3 cut(s)	71, 154, 305
FaiI	YATR	4 cut(s)	69, 152, 282, 303
FatI	CATG	3 cut(s)	67, 150, 301
FblI	GTMKAC	1 cut(s)	147
Fnu4HI	GCNGC	3 cut(s)	163, 187, 246
FokI	GGATG	1 cut(s)	121
FriOI	GRGCYC	1 cut(s)	126
Fsp4HI	GCNGC	3 cut(s)	163, 187, 246
FspBI	CTAG	1 cut(s)	182
GlaI	GCGC	1 cut(s)	141
GluI	GCNGC	3 cut(s)	163, 187, 246
HhaI	GCGC	1 cut(s)	142
Hin1II	CATG	3 cut(s)	71, 154, 305
Hin6I	GCGC	1 cut(s)	140
HinP1I	GCGC	1 cut(s)	140
HindIII	AAGCTT	1 cut(s)	353
HphI	GGTGA	1 cut(s)	26
Hpy166II	GTNNAC	2 cut(s)	34, 148
Hpy188I	TCNGA	3 cut(s)	90, 175, 320
Hpy188III	TCNNGA	1 cut(s)	196
Hpy8I	GTNNAC	2 cut(s)	34, 148
HpyAV	CCTTC	4 cut(s)	13, 53, 206, 280
HpyF10VI	GCNNNNNNNGC	1 cut(s)	245
Hsp92II	CATG	3 cut(s)	71, 154, 305
HspAI	GCGC	1 cut(s)	140
Kzo9I	GATC	3 cut(s)	77, 192, 262
LguI	GCTCTTC	1 cut(s)	322
LpnPI	CCDG	5 cut(s)	51, 57, 128, 209, 326
Lsp1109I	GCAGC	1 cut(s)	232
MaeI	CTAG	1 cut(s)	182
MaeIII	GTNAC	1 cut(s)	363
MalI	GATC	3 cut(s)	79, 194, 264
MboI	GATC	3 cut(s)	77, 192, 262
MboII	GAAGA	6 cut(s)	65, 266, 330, 333, 336, 339
MhlI	GDGCHC	4 cut(s)	126, 229, 312, 334
MluCI	AATT	4 cut(s)	7, 96, 203, 348
MmeI	TCCRAC	1 cut(s)	55
MroXI	GAANNNNTTC	1 cut(s)	203
MseI	TTAA	3 cut(s)	99, 351, 359
MwoI	GCNNNNNNNGC	1 cut(s)	245
NdeII	GATC	3 cut(s)	77, 192, 262
NlaIII	CATG	3 cut(s)	71, 154, 305
NspI	RCATGY	1 cut(s)	305
PciI	ACATGT	1 cut(s)	301
PciSI	GCTCTTC	1 cut(s)	322
PdmI	GAANNNNTTC	1 cut(s)	203
PkrI	GCNGC	3 cut(s)	164, 188, 247
PscI	ACATGT	1 cut(s)	301
Psp124BI	GAGCTC	1 cut(s)	126
SacI	GAGCTC	1 cut(s)	126
SapI	GCTCTTC	1 cut(s)	322
SaqAI	TTAA	3 cut(s)	99, 351, 359
SatI	GCNGC	3 cut(s)	163, 187, 246
Sau3AI	GATC	3 cut(s)	77, 192, 262
SduI	GDGCHC	4 cut(s)	126, 229, 312, 334
SetI	ASST	7 cut(s)	105, 126, 147, 183, 217, 273, 357
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
Sse9I	AATT	4 cut(s)	7, 96, 203, 348
SsiI	CCGC	3 cut(s)	106, 162, 186
SspI	AATATT	1 cut(s)	371
SspMI	CTAG	1 cut(s)	182
SstI	GAGCTC	1 cut(s)	126
TasI	AATT	4 cut(s)	7, 96, 203, 348
TauI	GCSGC	2 cut(s)	165, 189
Tru1I	TTAA	3 cut(s)	99, 351, 359
Tru9I	TTAA	3 cut(s)	99, 351, 359
TseI	GCWGC	1 cut(s)	245
TspDTI	ATGAA	3 cut(s)	66, 72, 267
XapI	RAATTY	1 cut(s)	203
XceI	RCATGY	1 cut(s)	305
XmiI	GTMKAC	1 cut(s)	147
XmnI	GAANNNNTTC	1 cut(s)	203
XspI	CTAG	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.