Rorug05G0032200

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0007159
Physical Location & Seq
Reverse (-)
2065067 .. 2069642
4576 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0032200.1

Sequence Viewer

Length: 903 bp
ATGGCGCCACCGGCATCGATTCGGTGGTTCGCGGCCGCTTCAGCTCTAATGCTCTGCCTTCTCATCTCTCCATCCACCGCCATCTACTGCGACGAAGACGACTGCTACGATCTCCTCGGGGTTACGCAGAGCGCAAACTCGTCGGAAATCAAGAAAGCGTACTATAAGCTATCTTTGAAACATCACCCGGATAAGAACCCGGATCCGGAATCGAAAAAGCTGTTTGTTAAAATTGCAAATGCTTATGAGATTCTGAAGGACGAGGCGTCGCGGGAGCAGTATGATTATGCAATTGCACATCCTGAGGAGTATTTTTACAATACAGCTCGCTACTATCAAGCATATTATGGTCACAAAACGGATCCTCGTGCTGTACTGGTTGGCTTTCTTTTGGTTCTTTCAGCATTTCAGTATTTCAATCAATGGACAAGGTATAATCAGGCTATAGACATGGTTAAAAAGACGCCTGCTTACAAAAATAGACTTCGGCAATTGGAACTTGAGCGTAGTGGGGGGACTACAACTAAGAAGAAGAGTAACAAGCAGACAAACAAGAAAATGGATGAAGATCTCAGCAAAGAACTTGAATTGCAGATCACAGGTGCTGAGCAACCCTCCATGTGGGATCTTCTTGGTGTCCGTTTCATTCTGCTACCCTACACTATTGGCAAGCTGCTATTATGGCATGGCTGTTGGTTCTGGAGATACAAGGTGAAACAAGCTCCATATACATGGGATGATGCCTCCTACCTGACACAGAGATCCCTTAGTGCGCCGCTTGACGCATGGAGAAATGTTGATGACTTGCGAAAGGAAGATCTTATCAATAGACGTTTATGGGAAGGTTCGAACTTGGAGAGCTATTATGCAGAGATGCGAAAAGAATCCAAGCGCAGAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase_Tyr

Protein Analysis

300

Amino Acids

35.22

Weight (kDa)

8.97

Isoelectric Point (pI)

50.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 34 - 95 6.3e-24 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 2 cut(s) 32, 271
AccIII TCCGGA 1 cut(s) 205
AciI CCGC 5 cut(s) 32, 36, 78, 271, 776
AclWI GGATC 6 cut(s) 197, 210, 356, 369, 633, 756
AcoI YGGCCR 1 cut(s) 33
AcuI CTGAAG 2 cut(s) 24, 275
AcyI GRCGYC 3 cut(s) 5, 266, 464
AfaI GTAC 2 cut(s) 161, 375
AfiI CCNNNNNNNGG 2 cut(s) 205, 621
AgsI TTSAA 3 cut(s) 178, 418, 587
AhdI GACNNNNNGTC 1 cut(s) 265
AluBI AGCT 7 cut(s) 44, 169, 220, 326, 673, 722, 861
AluI AGCT 7 cut(s) 44, 169, 220, 326, 673, 722, 861
AlwI GGATC 6 cut(s) 197, 210, 356, 369, 633, 756
AlwNI CAGNNNCTG 1 cut(s) 605
Ama87I CYCGRG 1 cut(s) 116
Aor13HI TCCGGA 1 cut(s) 205
AoxI GGCC 1 cut(s) 33
ApeKI GCWGC 1 cut(s) 673
AspLEI GCGC 4 cut(s) 7, 134, 775, 894
AsuC2I CCSGG 2 cut(s) 188, 200
AsuHPI GGTGA 2 cut(s) 176, 724
AsuII TTCGAA 1 cut(s) 848
AvaI CYCGRG 1 cut(s) 116
AxyI CCTNAGG 1 cut(s) 303
BamHI GGATCC 2 cut(s) 202, 361
BanI GGYRCC 1 cut(s) 4
BauI CACGAG 1 cut(s) 366
BbsI GAAGAC 1 cut(s) 102
BbvI GCAGC 1 cut(s) 660
BccI CCATC 2 cut(s) 79, 89
BcgI CGANNNNNNTGC 2 cut(s) 123, 157
BcnI CCSGG 2 cut(s) 188, 200
BfmI CTRYAG 1 cut(s) 444
BfoI RGCGCY 1 cut(s) 8
BglII AGATCT 2 cut(s) 568, 817
BisI GCNGC 4 cut(s) 33, 36, 674, 776
BlpI GCTNAGC 1 cut(s) 606
BlsI GCNGC 4 cut(s) 34, 37, 675, 777
Bme1390I CCNGG 2 cut(s) 188, 200
BmeRI GACNNNNNGTC 1 cut(s) 265
BmeT110I CYCGRG 1 cut(s) 116
BmiI GGNNCC 3 cut(s) 6, 204, 363
BmrFI CCNGG 2 cut(s) 188, 200
BmsI GCATC 3 cut(s) 23, 730, 864
BpiI GAAGAC 1 cut(s) 102
BplI GAGNNNNNCTC 2 cut(s) 599, 631
BpmI CTGGAG 1 cut(s) 721
Bpu1102I GCTNAGC 1 cut(s) 606
Bpu14I TTCGAA 1 cut(s) 848
BpuEI CTTGAG 1 cut(s) 521
BpuMI CCSGG 2 cut(s) 188, 200
Bsa29I ATCGAT 1 cut(s) 17
BsaBI GATNNNNATC 1 cut(s) 567
BsaHI GRCGYC 3 cut(s) 5, 266, 464
BsaJI CCNNGG 1 cut(s) 115
BsaWI WCCGGW 1 cut(s) 205
Bsc4I CCNNNNNNNGG 2 cut(s) 205, 621
Bse118I RCCGGY 1 cut(s) 10
Bse1I ACTGG 1 cut(s) 381
Bse21I CCTNAGG 1 cut(s) 303
Bse8I GATNNNNATC 1 cut(s) 567
BseAI TCCGGA 1 cut(s) 205
BseCI ATCGAT 1 cut(s) 17
BseDI CCNNGG 1 cut(s) 115
BseGI GGATG 4 cut(s) 71, 298, 568, 742
BseJI GATNNNNATC 1 cut(s) 567
BseLI CCNNNNNNNGG 2 cut(s) 205, 621
BseMII CTCAG 3 cut(s) 294, 586, 597
BseNI ACTGG 1 cut(s) 381
BseRI GAGGAG 2 cut(s) 104, 320
BseX3I CGGCCG 1 cut(s) 33
BseXI GCAGC 1 cut(s) 660
Bsh1236I CGCG 2 cut(s) 32, 271
Bsh1285I CGRYCG 1 cut(s) 36
BshFI GGCC 1 cut(s) 35
BshNI GGYRCC 1 cut(s) 4
BshVI ATCGAT 1 cut(s) 17
BsiEI CGRYCG 1 cut(s) 36
BsiHKCI CYCGRG 1 cut(s) 116
BsiSI CCGG 4 cut(s) 11, 188, 200, 206
BslFI GGGAC 1 cut(s) 529
BslI CCNNNNNNNGG 2 cut(s) 205, 621
BsmFI GGGAC 1 cut(s) 529
BsnI GGCC 1 cut(s) 35
BsoBI CYCGRG 1 cut(s) 116
Bsp119I TTCGAA 1 cut(s) 848
Bsp13I TCCGGA 1 cut(s) 205
Bsp143I GATC 8 cut(s) 109, 202, 361, 568, 594, 625, 761, 817
Bsp1720I GCTNAGC 1 cut(s) 606
BspACI CCGC 5 cut(s) 32, 36, 78, 271, 776
BspANI GGCC 1 cut(s) 35
BspCNI CTCAG 3 cut(s) 295, 585, 598
BspDI ATCGAT 1 cut(s) 17
BspEI TCCGGA 1 cut(s) 205
BspFNI CGCG 2 cut(s) 32, 271
BspLI GGNNCC 3 cut(s) 6, 204, 363
BspPI GGATC 6 cut(s) 197, 210, 356, 369, 633, 756
BspT104I TTCGAA 1 cut(s) 848
BspT107I GGYRCC 1 cut(s) 4
BsrFI RCCGGY 1 cut(s) 10
BsrI ACTGG 1 cut(s) 381
BssAI RCCGGY 1 cut(s) 10
BssECI CCNNGG 1 cut(s) 115
BssMI GATC 8 cut(s) 109, 202, 361, 568, 594, 625, 761, 817
BssNI GRCGYC 3 cut(s) 5, 266, 464
BssSI CACGAG 1 cut(s) 366
Bst2BI CACGAG 1 cut(s) 366
Bst6I CTCTTC 1 cut(s) 527
BstACI GRCGYC 3 cut(s) 5, 266, 464
BstBI TTCGAA 1 cut(s) 848
BstC8I GCNNGC 3 cut(s) 328, 468, 671
BstDEI CTNAG 5 cut(s) 303, 525, 572, 606, 767
BstF5I GGATG 4 cut(s) 71, 298, 568, 742
BstFNI CGCG 2 cut(s) 32, 271
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 4 cut(s) 7, 134, 775, 894
BstKTI GATC 8 cut(s) 112, 205, 364, 571, 597, 628, 764, 820
BstMBI GATC 8 cut(s) 109, 202, 361, 568, 594, 625, 761, 817
BstMCI CGRYCG 1 cut(s) 36
BstMWI GCNNNNNNNGC 3 cut(s) 11, 41, 682
BstSCI CCNGG 2 cut(s) 186, 198
BstSFI CTRYAG 1 cut(s) 444
BstUI CGCG 2 cut(s) 32, 271
BstV1I GCAGC 1 cut(s) 660
BstV2I GAAGAC 1 cut(s) 102
BstX2I RGATCY 6 cut(s) 202, 361, 568, 625, 761, 817
BstXI CCANNNNNNTGG 1 cut(s) 732
BstYI RGATCY 6 cut(s) 202, 361, 568, 625, 761, 817
BstZI CGGCCG 1 cut(s) 33
Bsu15I ATCGAT 1 cut(s) 17
Bsu36I CCTNAGG 1 cut(s) 303
BsuRI GGCC 1 cut(s) 35
BsuTUI ATCGAT 1 cut(s) 17
BtsCI GGATG 4 cut(s) 71, 298, 568, 742
Cac8I GCNNGC 3 cut(s) 328, 468, 671
CaiI CAGNNNCTG 1 cut(s) 605
CciNI GCGGCCGC 1 cut(s) 33
CfoI GCGC 4 cut(s) 7, 134, 775, 894
Cfr10I RCCGGY 1 cut(s) 10
ClaI ATCGAT 1 cut(s) 17
CseI GACGC 3 cut(s) 255, 472, 791
Csp6I GTAC 2 cut(s) 160, 374
CviAII CATG 5 cut(s) 451, 619, 686, 732, 786
CviQI GTAC 2 cut(s) 160, 374
DdeI CTNAG 5 cut(s) 303, 525, 572, 606, 767
DinI GGCGCC 1 cut(s) 6
DpnI GATC 8 cut(s) 111, 204, 363, 570, 596, 627, 763, 819
DpnII GATC 8 cut(s) 109, 202, 361, 568, 594, 625, 761, 817
DriI GACNNNNNGTC 1 cut(s) 265
EaeI YGGCCR 1 cut(s) 33
EagI CGGCCG 1 cut(s) 33
Eam1104I CTCTTC 1 cut(s) 527
Eam1105I GACNNNNNGTC 1 cut(s) 265
EarI CTCTTC 1 cut(s) 527
EclXI CGGCCG 1 cut(s) 33
Eco52I CGGCCG 1 cut(s) 33
Eco57I CTGAAG 2 cut(s) 24, 275
Eco81I CCTNAGG 1 cut(s) 303
Eco88I CYCGRG 1 cut(s) 116
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
FaeI CATG 5 cut(s) 454, 622, 689, 735, 789
FaqI GGGAC 1 cut(s) 529
FatI CATG 5 cut(s) 450, 618, 685, 731, 785
FauI CCCGC 1 cut(s) 264
Fnu4HI GCNGC 4 cut(s) 33, 36, 674, 776
FokI GGATG 4 cut(s) 58, 285, 575, 749
Fsp4HI GCNGC 4 cut(s) 33, 36, 674, 776
GlaI GCGC 4 cut(s) 6, 133, 774, 893
GluI GCNGC 4 cut(s) 33, 36, 674, 776
GsuI CTGGAG 1 cut(s) 721
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 1 cut(s) 35
HapII CCGG 4 cut(s) 11, 188, 200, 206
HgaI GACGC 3 cut(s) 255, 472, 791
HhaI GCGC 4 cut(s) 7, 134, 775, 894
Hin1I GRCGYC 3 cut(s) 5, 266, 464
Hin1II CATG 5 cut(s) 454, 622, 689, 735, 789
Hin6I GCGC 4 cut(s) 5, 132, 773, 892
HinP1I GCGC 4 cut(s) 5, 132, 773, 892
HinfI GANTC 4 cut(s) 19, 209, 250, 884
HpaII CCGG 4 cut(s) 11, 188, 200, 206
HphI GGTGA 2 cut(s) 176, 724
Hpy188I TCNGA 2 cut(s) 145, 255
Hpy188III TCNNGA 4 cut(s) 151, 206, 302, 700
Hpy99I CGWCG 3 cut(s) 95, 145, 271
HpyAV CCTTC 3 cut(s) 68, 250, 836
HpyCH4IV ACGT 1 cut(s) 832
HpyCH4V TGCA 5 cut(s) 236, 290, 296, 592, 869
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 41, 682
HpyF3I CTNAG 5 cut(s) 303, 525, 572, 606, 767
HpySE526I ACGT 1 cut(s) 832
Hsp92I GRCGYC 3 cut(s) 5, 266, 464
Hsp92II CATG 5 cut(s) 454, 622, 689, 735, 789
HspAI GCGC 4 cut(s) 5, 132, 773, 892
KasI GGCGCC 1 cut(s) 4
Kpn2I TCCGGA 1 cut(s) 205
Kzo9I GATC 8 cut(s) 109, 202, 361, 568, 594, 625, 761, 817
LmnI GCTCC 2 cut(s) 274, 727
Lsp1109I GCAGC 1 cut(s) 660
LweI GCATC 3 cut(s) 23, 730, 864
MaeII ACGT 1 cut(s) 832
MaeIII GTNAC 3 cut(s) 121, 350, 536
MalI GATC 8 cut(s) 111, 204, 363, 570, 596, 627, 763, 819
MboI GATC 8 cut(s) 109, 202, 361, 568, 594, 625, 761, 817
MboII GAAGA 6 cut(s) 107, 541, 544, 578, 620, 827
MfeI CAATTG 2 cut(s) 291, 491
MflI RGATCY 6 cut(s) 202, 361, 568, 625, 761, 817
MluCI AATT 4 cut(s) 231, 291, 491, 587
Mly113I GGCGCC 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 123
MnlI CCTC 6 cut(s) 125, 256, 298, 375, 625, 754
MroI TCCGGA 1 cut(s) 205
MseI TTAA 2 cut(s) 228, 456
MslI CAYNNNNRTG 1 cut(s) 730
MspI CCGG 4 cut(s) 11, 188, 200, 206
MspR9I CCNGG 2 cut(s) 188, 200
MunI CAATTG 2 cut(s) 291, 491
MvnI CGCG 2 cut(s) 32, 271
MwoI GCNNNNNNNGC 3 cut(s) 11, 41, 682
NarI GGCGCC 1 cut(s) 5
NciI CCSGG 2 cut(s) 188, 200
NdeII GATC 8 cut(s) 109, 202, 361, 568, 594, 625, 761, 817
NlaIII CATG 5 cut(s) 454, 622, 689, 735, 789
NlaIV GGNNCC 3 cut(s) 6, 204, 363
NmuCI GTSAC 1 cut(s) 350
NotI GCGGCCGC 1 cut(s) 33
NspV TTCGAA 1 cut(s) 848
PcsI WCGNNNNNNNCGW 1 cut(s) 105
PfeI GAWTC 4 cut(s) 19, 209, 250, 884
PkrI GCNGC 4 cut(s) 34, 37, 675, 777
PluTI GGCGCC 1 cut(s) 8
PspN4I GGNNCC 3 cut(s) 6, 204, 363
PstNI CAGNNNCTG 1 cut(s) 605
PsuI RGATCY 6 cut(s) 202, 361, 568, 625, 761, 817
RsaI GTAC 2 cut(s) 161, 375
RsaNI GTAC 2 cut(s) 160, 374
RseI CAYNNNNRTG 1 cut(s) 730
SaqAI TTAA 2 cut(s) 228, 456
SatI GCNGC 4 cut(s) 33, 36, 674, 776
Sau3AI GATC 8 cut(s) 109, 202, 361, 568, 594, 625, 761, 817
ScrFI CCNGG 2 cut(s) 188, 200
SfaNI GCATC 3 cut(s) 23, 730, 864
SfcI CTRYAG 1 cut(s) 444
SfoI GGCGCC 1 cut(s) 6
SfuI TTCGAA 1 cut(s) 848
SmiMI CAYNNNNRTG 1 cut(s) 730
SmlI CTYRAG 1 cut(s) 500
SmoI CTYRAG 1 cut(s) 500
Sse9I AATT 4 cut(s) 231, 291, 491, 587
SsiI CCGC 5 cut(s) 32, 36, 78, 271, 776
SspDI GGCGCC 1 cut(s) 4
StyD4I CCNGG 2 cut(s) 186, 198
TaiI ACGT 1 cut(s) 835
TaqI TCGA 3 cut(s) 17, 212, 848
TasI AATT 4 cut(s) 231, 291, 491, 587
TatI WGTACW 1 cut(s) 373
TauI GCSGC 3 cut(s) 35, 38, 778
TfiI GAWTC 4 cut(s) 19, 209, 250, 884
Tru1I TTAA 2 cut(s) 228, 456
Tru9I TTAA 2 cut(s) 228, 456
TseFI GTSAC 1 cut(s) 350
TseI GCWGC 1 cut(s) 673
Tsp45I GTSAC 1 cut(s) 350
TspDTI ATGAA 2 cut(s) 579, 634
TspGWI ACGGA 2 cut(s) 374, 629
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.