Rorug05G0253700

Belongs to the argonaute family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0006994
Physical Location & Seq
Reverse (-)
27944588 .. 27947984
3397 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0253700.1

Sequence Viewer

Length: 945 bp
ATGATAGAGACTTTGGATTTATCAAACAACAACTTATCCGGACAAATTCCTGAATATTTGTCGCAGTTGCCAAAGTTAACTGTCTTAAACTTGGAGAAAAATGAGCTCACAGGTTCAGTTCCTGCCGGGCTTATAGCAAAAGGAAAGGATGGTTTGTCATTGAGTTTGTGCGGAAATCCAAGTTTATCAAAGCAGGTTCCTTGCGAAAAGAAGAAGAAAAAGTTTGCTGTTCCGGTCGTCGTGTCAATTATTGTAATGTTGTTGGTCTCATCCATTGCAGCAGCTATATTGTGGAAATTAAAAAAGGGTCATGCTGTTTGGAAGTACCGGAGAGTTGATAAGGGACATGATGTGTTTTTGAGTTTTAGAGGTGAGGATACACGCAAAGGCTTTGCACGTAATCTGTACGAAGCTTTAGTGCAAAAAGGAATCAAGACATTTTTTGATGATGAAAAGCTCAAGGCGGGAGATGAAATAGCACTTGCACTTCTCGATGCAATAGAAGCATCAAAGATTTCGGTCATTATAATCTCAAAAAACTATGCTTCGTCAAGTTGGTGTTTGGGGGAACTTGTTAAGATCCTTGATTGTAAAAAGTCAAGGCATCAACGTGTTATCCCAGTTTTTTACAATGTGGATCCATCACACGTGCGACATCAATCTGATAGTTTTTCTCTTCAGAAGTGGAAAGACAAAAAGGAGCTTCCCGCATGGCAAAAAGCTCTTACCGAAGTAGCAAGTTTGTCCGGATTTCATTACACGAACGGGTATGAATCTAAAATGATTGGCGACATTGTTAAACAAATATCAGATGTCAACGAGCAAAAGAAGAAAGAAGCTGGAAACTCAGTTGATGGGTTCGACAAAATATCGCCACAAGGAGTGGCCGGGTCAGTCAGCGTCTCAGAAACAAAGAGCAATGGAGCTGGTGGTTCACCAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003682 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005719 GO:0005730 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0008150 GO:0008152 GO:0008213 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0009814 GO:0009816 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0015030 GO:0016032 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016604 GO:0016787 GO:0016788 GO:0018022 GO:0018193 GO:0018205 GO:0019048 GO:0019219 GO:0019222 GO:0019538 GO:0030422 GO:0031047 GO:0031048 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0034641 GO:0034968 GO:0035194 GO:0035197 GO:0035198 GO:0035821 GO:0036211 GO:0040029 GO:0042221 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0043412 GO:0043414 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044728 GO:0045087 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051567 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0060255 GO:0061647 GO:0061980 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0070919 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0098542 GO:0140098 GO:1901360 GO:1901363 GO:1901564 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

314

Amino Acids

34.43

Weight (kDa)

9.3

Isoelectric Point (pI)

33.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_4 PF12799 3 - 36 2.7e-06 Leucine Rich repeats (2 copies)
TIR PF01582 116 - 279 9.1e-50 TIR domain
TIR_2 PF13676 118 - 229 9.4e-20 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 527
Acc36I ACCTGC 1 cut(s) 184
AccIII TCCGGA 2 cut(s) 38, 746
AciI CCGC 3 cut(s) 171, 464, 708
AclWI GGATC 3 cut(s) 574, 632, 645
AcoI YGGCCR 1 cut(s) 885
AcsI RAATTY 1 cut(s) 45
AcuI CTGAAG 1 cut(s) 662
AcvI CACGTG 1 cut(s) 649
AfaI GTAC 2 cut(s) 326, 407
AflIII ACRYGT 2 cut(s) 610, 646
AluBI AGCT 8 cut(s) 106, 284, 413, 457, 703, 722, 839, 926
AluI AGCT 8 cut(s) 106, 284, 413, 457, 703, 722, 839, 926
Alw21I GWGCWC 1 cut(s) 108
Alw26I GTCTC 3 cut(s) 2, 271, 907
AlwI GGATC 3 cut(s) 574, 632, 645
AlwNI CAGNNNCTG 1 cut(s) 122
Aor13HI TCCGGA 2 cut(s) 38, 746
AoxI GGCC 1 cut(s) 885
ApeKI GCWGC 2 cut(s) 278, 281
ApoI RAATTY 1 cut(s) 45
AsuC2I CCSGG 2 cut(s) 127, 889
AsuHPI GGTGA 2 cut(s) 383, 927
BamHI GGATCC 1 cut(s) 637
BanII GRGCYC 1 cut(s) 108
BbrPI CACGTG 1 cut(s) 649
Bbv12I GWGCWC 1 cut(s) 108
BbvI GCAGC 2 cut(s) 290, 293
BccI CCATC 3 cut(s) 143, 649, 848
BciVI GTATCC 1 cut(s) 370
BcnI CCSGG 2 cut(s) 127, 889
BcoDI GTCTC 3 cut(s) 2, 271, 907
BfuAI ACCTGC 1 cut(s) 184
BfuI GTATCC 1 cut(s) 370
BisI GCNGC 2 cut(s) 279, 282
BlsI GCNGC 2 cut(s) 280, 283
Bme1390I CCNGG 2 cut(s) 127, 889
BmiI GGNNCC 2 cut(s) 198, 639
BmrFI CCNGG 2 cut(s) 127, 889
BmrI ACTGGG 1 cut(s) 614
BmsI GCATC 3 cut(s) 484, 515, 613
BmuI ACTGGG 1 cut(s) 614
BpuEI CTTGAG 1 cut(s) 443
BpuMI CCSGG 2 cut(s) 127, 889
BsaAI YACGTR 2 cut(s) 398, 649
BsaI GGTCTC 1 cut(s) 271
BsaWI WCCGGW 4 cut(s) 38, 232, 327, 746
Bse1I ACTGG 2 cut(s) 620, 938
Bse3DI GCAATG 2 cut(s) 273, 925
BseAI TCCGGA 2 cut(s) 38, 746
BseGI GGATG 2 cut(s) 154, 269
BseMI GCAATG 2 cut(s) 273, 925
BseMII CTCAG 2 cut(s) 861, 918
BseNI ACTGG 2 cut(s) 620, 938
BseXI GCAGC 2 cut(s) 290, 293
Bsh1285I CGRYCG 1 cut(s) 237
BshFI GGCC 1 cut(s) 887
BsiEI CGRYCG 1 cut(s) 237
BsiHKAI GWGCWC 1 cut(s) 108
BsiSI CCGG 6 cut(s) 39, 126, 233, 328, 747, 888
BslFI GGGAC 1 cut(s) 357
BsmAI GTCTC 3 cut(s) 2, 271, 907
BsmBI CGTCTC 1 cut(s) 907
BsmFI GGGAC 1 cut(s) 357
BsnI GGCC 1 cut(s) 887
Bso31I GGTCTC 1 cut(s) 271
Bsp1286I GDGCHC 1 cut(s) 108
Bsp13I TCCGGA 2 cut(s) 38, 746
Bsp143I GATC 2 cut(s) 579, 637
BspACI CCGC 3 cut(s) 171, 464, 708
BspANI GGCC 1 cut(s) 887
BspCNI CTCAG 2 cut(s) 860, 917
BspEI TCCGGA 2 cut(s) 38, 746
BspLI GGNNCC 2 cut(s) 198, 639
BspMI ACCTGC 1 cut(s) 184
BspPI GGATC 3 cut(s) 574, 632, 645
BspTNI GGTCTC 1 cut(s) 271
BsrDI GCAATG 2 cut(s) 273, 925
BsrI ACTGG 2 cut(s) 620, 938
BssMI GATC 2 cut(s) 579, 637
Bst4CI ACNGT 1 cut(s) 82
Bst6I CTCTTC 1 cut(s) 681
BstBAI YACGTR 2 cut(s) 398, 649
BstDEI CTNAG 2 cut(s) 847, 904
BstF5I GGATG 2 cut(s) 154, 269
BstKTI GATC 2 cut(s) 582, 640
BstMAI GTCTC 3 cut(s) 2, 271, 907
BstMBI GATC 2 cut(s) 579, 637
BstMCI CGRYCG 1 cut(s) 237
BstMWI GCNNNNNNNGC 1 cut(s) 503
BstSCI CCNGG 2 cut(s) 125, 887
BstV1I GCAGC 2 cut(s) 290, 293
BstX2I RGATCY 2 cut(s) 579, 637
BstYI RGATCY 2 cut(s) 579, 637
BsuI GTATCC 1 cut(s) 370
BsuRI GGCC 1 cut(s) 887
BtsCI GGATG 2 cut(s) 154, 269
BtsIMutI CAGTG 1 cut(s) 945
BveI ACCTGC 1 cut(s) 184
CaiI CAGNNNCTG 1 cut(s) 122
CseI GACGC 1 cut(s) 889
Csp6I GTAC 2 cut(s) 325, 406
CviAII CATG 3 cut(s) 311, 347, 711
CviQI GTAC 2 cut(s) 325, 406
DdeI CTNAG 2 cut(s) 847, 904
DpnI GATC 2 cut(s) 581, 639
DpnII GATC 2 cut(s) 579, 637
EaeI YGGCCR 1 cut(s) 885
Eam1104I CTCTTC 1 cut(s) 681
EarI CTCTTC 1 cut(s) 681
Ecl136II GAGCTC 1 cut(s) 106
Eco24I GRGCYC 1 cut(s) 108
Eco31I GGTCTC 1 cut(s) 271
Eco53kI GAGCTC 1 cut(s) 106
Eco57I CTGAAG 1 cut(s) 662
Eco72I CACGTG 1 cut(s) 649
EcoICRI GAGCTC 1 cut(s) 106
EcoT38I GRGCYC 1 cut(s) 108
Esp3I CGTCTC 1 cut(s) 907
FaeI CATG 3 cut(s) 314, 350, 714
FaiI YATR 8 cut(s) 134, 287, 312, 348, 527, 543, 712, 771
FaqI GGGAC 1 cut(s) 357
FatI CATG 3 cut(s) 310, 346, 710
FauI CCCGC 2 cut(s) 457, 715
Fnu4HI GCNGC 2 cut(s) 279, 282
FokI GGATG 2 cut(s) 161, 256
FriOI GRGCYC 1 cut(s) 108
Fsp4HI GCNGC 2 cut(s) 279, 282
GluI GCNGC 2 cut(s) 279, 282
HaeIII GGCC 1 cut(s) 887
HapII CCGG 6 cut(s) 39, 126, 233, 328, 747, 888
HgaI GACGC 1 cut(s) 889
Hin1II CATG 3 cut(s) 314, 350, 714
HincII GTYRAC 2 cut(s) 78, 817
HindII GTYRAC 2 cut(s) 78, 817
HindIII AAGCTT 1 cut(s) 411
HinfI GANTC 2 cut(s) 429, 773
HpaI GTTAAC 1 cut(s) 78
HpaII CCGG 6 cut(s) 39, 126, 233, 328, 747, 888
HphI GGTGA 2 cut(s) 383, 927
Hpy166II GTNNAC 3 cut(s) 78, 817, 935
Hpy188I TCNGA 4 cut(s) 664, 681, 811, 907
Hpy188III TCNNGA 5 cut(s) 39, 50, 433, 491, 747
Hpy8I GTNNAC 3 cut(s) 78, 817, 935
Hpy99I CGWCG 1 cut(s) 242
HpyCH4III ACNGT 1 cut(s) 82
HpyCH4IV ACGT 3 cut(s) 397, 610, 648
HpyCH4V TGCA 5 cut(s) 278, 395, 421, 485, 497
HpyF10VI GCNNNNNNNGC 1 cut(s) 503
HpyF3I CTNAG 2 cut(s) 847, 904
HpySE526I ACGT 3 cut(s) 397, 610, 648
Hsp92II CATG 3 cut(s) 314, 350, 714
Kpn2I TCCGGA 2 cut(s) 38, 746
KspAI GTTAAC 1 cut(s) 78
Kzo9I GATC 2 cut(s) 579, 637
LmnI GCTCC 2 cut(s) 700, 923
Lsp1109I GCAGC 2 cut(s) 290, 293
LweI GCATC 3 cut(s) 484, 515, 613
MaeII ACGT 3 cut(s) 397, 610, 648
MalI GATC 2 cut(s) 581, 639
MboI GATC 2 cut(s) 579, 637
MboII GAAGA 4 cut(s) 223, 226, 668, 841
MflI RGATCY 2 cut(s) 579, 637
MhlI GDGCHC 1 cut(s) 108
MluCI AATT 3 cut(s) 45, 246, 296
MnlI CCTC 2 cut(s) 362, 367
MroI TCCGGA 2 cut(s) 38, 746
MseI TTAA 5 cut(s) 77, 86, 299, 576, 798
MslI CAYNNNNRTG 1 cut(s) 609
MspI CCGG 6 cut(s) 39, 126, 233, 328, 747, 888
MspR9I CCNGG 2 cut(s) 127, 889
MwoI GCNNNNNNNGC 1 cut(s) 503
NciI CCSGG 2 cut(s) 127, 889
NdeII GATC 2 cut(s) 579, 637
NlaIII CATG 3 cut(s) 314, 350, 714
NlaIV GGNNCC 2 cut(s) 198, 639
PfeI GAWTC 2 cut(s) 429, 773
PkrI GCNGC 2 cut(s) 280, 283
PmaCI CACGTG 1 cut(s) 649
PmlI CACGTG 1 cut(s) 649
Ppu21I YACGTR 2 cut(s) 398, 649
PsiI TTATAA 1 cut(s) 527
Psp124BI GAGCTC 1 cut(s) 108
PspCI CACGTG 1 cut(s) 649
PspN4I GGNNCC 2 cut(s) 198, 639
PstNI CAGNNNCTG 1 cut(s) 122
PsuI RGATCY 2 cut(s) 579, 637
RsaI GTAC 2 cut(s) 326, 407
RsaNI GTAC 2 cut(s) 325, 406
RseI CAYNNNNRTG 1 cut(s) 609
SacI GAGCTC 1 cut(s) 108
SaqAI TTAA 5 cut(s) 77, 86, 299, 576, 798
SatI GCNGC 2 cut(s) 279, 282
Sau3AI GATC 2 cut(s) 579, 637
ScrFI CCNGG 2 cut(s) 127, 889
SduI GDGCHC 1 cut(s) 108
SfaNI GCATC 3 cut(s) 484, 515, 613
SmiMI CAYNNNNRTG 1 cut(s) 609
SmlI CTYRAG 1 cut(s) 458
SmoI CTYRAG 1 cut(s) 458
Sse9I AATT 3 cut(s) 45, 246, 296
SsiI CCGC 3 cut(s) 171, 464, 708
SspI AATATT 1 cut(s) 56
SstI GAGCTC 1 cut(s) 108
StyD4I CCNGG 2 cut(s) 125, 887
TaaI ACNGT 1 cut(s) 82
TaiI ACGT 3 cut(s) 400, 613, 651
TaqI TCGA 2 cut(s) 492, 861
TaqII GACCGA 1 cut(s) 508
TasI AATT 3 cut(s) 45, 246, 296
TfiI GAWTC 2 cut(s) 429, 773
Tru1I TTAA 5 cut(s) 77, 86, 299, 576, 798
Tru9I TTAA 5 cut(s) 77, 86, 299, 576, 798
TscAI CASTG 1 cut(s) 945
TseI GCWGC 2 cut(s) 278, 281
TspDTI ATGAA 4 cut(s) 465, 486, 743, 786
TspRI CASTG 1 cut(s) 945
XapI RAATTY 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.