Rh5DG351500

Belongs to the argonaute family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0006994
Physical Location & Seq
Reverse (-)
48622384 .. 48630614
8231 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG351500.1

Sequence Viewer

Length: 2814 bp
ATGGATTCATTTGAGCCCGATGGAAATGCAGCAAATGGATCAAATGGAGAGAACGGGGCAAACGGAGAAAACGGGGCAAATGGAAACGGGGAAGAACATGCATTGCCACCCCCACCCCCTGTTATCCCACCAGATGTTGTTCCATTGCGTGCTCAAGCAGATATTACTCCTGAACCTTTAAAGAAGAAGATCGTGCGCCTACCAATTGCTAGGCGAGGCCTTGGAACAAAAGGGCAAAAGACTCCTCTGCTGACTAATCACTTCAAAGTTAACGTCACTAATAATAACAAAGAAGATCACTTCTTCCATTATAGTGTTTCCGTTACGTATGAAGATGGTCGTCCCCTTGACGGCAAGGGTGCTGGAAGAAGGATAATTGACAGAGTCCACCAGACTTATATCTCTGAGTTAGGTGGGAAGGACTTTGCTTATGATGGGGAGAAGAGTCTCTTTACTGTTGGTTCGCTTCCACGCAACAAACTTGAATTTTCAGTTGTTCTGGAGGATACACCATCAAACAGAAATAATGGAAATTGTAATGCCGATGGTGATGGGAGTCCTAATGAAAGTGATCGGAAGAGGCTACGGCGTCCAGGTCGTTCCAAAACGTTCAATGTTGAAATTAGCTATGCTGCAAAAATTCCCATGAAGGCAATTGGAGATGCTCTACGCGGTCAGGAGTCAGAAAACTCCCAAGAGGCTCTGAGAGTGCTGGATATCATATTAAGGCAACATGCATCTAAGCAAGGATGCCTCCTGGTTCGTCAATCTTTCTTCCATAATGATCCAAAAAGTTTTGTTGATGTTGGAGGAGGTGTTCTAGGGTGCAGAGGATTCCATTCAAGCTTCAGAACCACCCAGGGTGGCCTGTCGTTGAACATTGATGTATCAACTACCATGATAATACAGCCTGGACCAGTTGTTGATTTTCTAATTTCCAACCAGAATGTTAGAGATCCCTTTTCACTTGACTGGACAAAGGCTAAGAGAACTCTGAAGAATTTGAGGGTTAAAACGAGCCCAACCAATCTGGAATACAAGATAACTGGATTGAGCGAGCGACCATGCAAAGAGCAAATGTTTACCTTGAGAAACAAAAATGCAAAGGATGGGGAGGATGGAGAAATTGAAGTGACTGTTTATGACTATTTTGTTAGTCATCGCAATATACAGTTGCGTTATTCTGGCGATCTGCCCTGCATTAATGTTGGAAAGCCAAAGCGTCCTACTTACATTCCCCTTGAGCTATGTGAATTGGTTTCGTTGCAACGGTATACAAAAGCACTTTCAACTCTTCAAAGATCTTCACTGGTGGAGAAGTCAAGGCAAAAGCCACAGGAGAGGATGAGCATTTTGTCTAATGCTTTGAAAATCAACAATTATGATGGTGAACCTATGCTACGTGCATGTGGTGTATCAATTGGTAATAGTTTCACTCAAGTGGAAGGCCGTGTTTTGCCTGCTCCAAAGTTAAAAGTTGGCAATGGGGATGATTTCTTCCCCAGAAATGGGCGGTGGAATTTCAACAATAAGAAACTCGTGAAGCCTACTAAGATAGAACGATGGGTTGTTGTTAACTTCTCCGCACGCTGTGATCTGAAAGCCCTTGTCCGTGATTTGATTAAATGTGGAGATATGAAGGGAATTGCCATAGACCCTCCATTTGATGTTTTTGAAGAGAATCCACAGTCTCGACGTGCCCCACCTCTGGTTAGGGTTGAGAGAATGTTTGAGGATATTCAATCCAAACTTCCTGGACAACCACAGTTCATTCTCTGTTTGCTTCCGGAGAGGAAAAATTCTGCTCTATATGGCCCATGGAAGCGGAAGAATCTGGCTGAGTATGGTATTGTCACACAGTGCATAGCTCCTACCAGGGTCAATGACCAATATCTTACAAATGTTCTGCTAAAAATTAATGCTAAGCTTGGTGGATTAAATTCCTTGTTGGCTGTTGAGTTTTCTCCTTCCATTCCTGTGGTTTCCAAGGCTCCTACCATCATCCTAGGGATGGATGTGTCGCATGGCTCTCCTGGCCAGTCGGACATACCATCAATAGCCGCGGTAGTCAGCTCGAGGCAGTGGCCACTCATTTCCCGCTATAGGGCATCTGTTCGAACTCAGTCTCCAAAGGTCGAAATGATTGATTCACTGTTCAAGCGTGTTTCTGATACAGAAGATGAAGGCATTATGAGAGAGCTGCTTTTGGACTTCTATACAAGTTCAAATAAGCGTAAACCGGATCAGATAATCATATTCAGGGATGGTGTCAGCGAGTCTCAATTCAACCAAGTCTTGAACATTGAACTGGATCAAATCATTGAGGCGTGCAAGTTCCTTGACGAGAGTTGGTGCCCAAAATTTGTGGTGATTATCGCTCAGAAAAACCACCATACAAAATTCTTTCAGCCTCAGTCACCTGATAATGTTCCACCTGGTACCATTATTGACAACAGAATTTGTCATCCAAAGAACAATGATTTTTATCTCTGTGCACAGGCCGGAATGATAGGTACCACGAGACCTACTCATTATCATGTTCTGTTGGACGACGTTGGGTTTTCAGCTGATGATCTGCAGGAACTAGTGCATTCTCTATCCTATGTGTACCAGAGAAGTACCACTGCCATTTCTGTAGTTGCTCCGATTTGCTATGCTCATCTCGCTGCCACTCAAATGAGTCAGTTTGTGAAATTTGAAGATGCATCTGAGACTTCATCAAGCCATGGTGGGCTGACCTCTGCTGGAGCAGTGCCAGTCCCGCAGCTTCCCAGGCTGAAGGAGAACGTGGCCAATTCCATGTTTTTCTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003682 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005719 GO:0005730 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0008150 GO:0008152 GO:0008213 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0009814 GO:0009816 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0015030 GO:0016032 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016604 GO:0016787 GO:0016788 GO:0018022 GO:0018193 GO:0018205 GO:0019048 GO:0019219 GO:0019222 GO:0019538 GO:0030422 GO:0031047 GO:0031048 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0034641 GO:0034968 GO:0035194 GO:0035197 GO:0035198 GO:0035821 GO:0036211 GO:0040029 GO:0042221 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0043412 GO:0043414 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044728 GO:0045087 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051567 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0060255 GO:0061647 GO:0061980 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0070919 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0098542 GO:0140098 GO:1901360 GO:1901363 GO:1901564 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

937

Amino Acids

104.26

Weight (kDa)

8.88

Isoelectric Point (pI)

45.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ArgoN PF16486 80 - 242 9.8e-30 N-terminal domain of argonaute
ArgoL1 PF08699 254 - 303 1.3e-18 Argonaute linker 1 domain
PAZ PF02170 308 - 437 6.1e-31 PAZ domain
ArgoL2 PF16488 447 - 492 1e-12 Argonaute linker 2 domain
Piwi PF02171 590 - 898 1.4e-105 Piwi domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 2438, 2513
AccB1I GGYRCC 3 cut(s) 2352, 2438, 2513
AccI GTMKAC 1 cut(s) 1274
AccII CGCG 2 cut(s) 672, 2063
AccIII TCCGGA 1 cut(s) 1786
AciI CCGC 8 cut(s) 672, 1513, 1584, 1825, 2061, 2063, 2098, 2762
AclI AACGTT 1 cut(s) 608
AclWI GGATC 5 cut(s) 46, 779, 950, 2250, 2319
AcoI YGGCCR 3 cut(s) 2035, 2084, 2790
AcuI CTGAAG 3 cut(s) 832, 1016, 2798
AcyI GRCGYC 1 cut(s) 589
AdeI CACNNNGTG 2 cut(s) 1592, 1860
AfaI GTAC 4 cut(s) 2440, 2515, 2609, 2620
AfiI CCNNNNNNNGG 7 cut(s) 350, 1508, 1509, 1708, 2011, 2103, 2104
AhlI ACTAGT 1 cut(s) 2584
AjiI CACGTC 1 cut(s) 1697
AjnI CCWGG 9 cut(s) 592, 756, 858, 910, 1753, 1874, 2032, 2434, 2771
AleI CACNNNNGTG 1 cut(s) 1439
AloI GAACNNNNNNTCC 4 cut(s) 801, 833, 2110, 2142
AluBI AGCT 9 cut(s) 627, 846, 1246, 1868, 1927, 2073, 2200, 2567, 2767
AluI AGCT 9 cut(s) 627, 846, 1246, 1868, 1927, 2073, 2200, 2567, 2767
Alw21I GWGCWC 2 cut(s) 154, 2497
Alw26I GTCTC 6 cut(s) 452, 1695, 2130, 2283, 2515, 2705
Alw44I GTGCAC 1 cut(s) 2493
AlwI GGATC 5 cut(s) 46, 779, 950, 2250, 2319
Ama87I CYCGRG 1 cut(s) 2074
Aor13HI TCCGGA 1 cut(s) 1786
AoxI GGCC 8 cut(s) 217, 865, 1447, 1813, 2035, 2084, 2499, 2790
ApaLI GTGCAC 1 cut(s) 2493
ApeKI GCWGC 5 cut(s) 29, 632, 2200, 2666, 2764
ArsI GACNNNNNNTTYG 4 cut(s) 258, 290, 1646, 1678
AseI ATTAAT 2 cut(s) 1203, 1917
Asp718I GGTACC 2 cut(s) 2438, 2513
AspA2I CCTAGG 1 cut(s) 2005
AspLEI GCGC 1 cut(s) 198
AspS9I GGNCC 2 cut(s) 914, 1814
AsuHPI GGTGA 4 cut(s) 560, 1400, 2380, 2409
AsuII TTCGAA 1 cut(s) 2116
AvaI CYCGRG 1 cut(s) 2074
AvaII GGWCC 1 cut(s) 914
AvrII CCTAGG 1 cut(s) 2005
BaeGI GKGCMC 3 cut(s) 1702, 2357, 2497
BalI TGGCCA 3 cut(s) 2037, 2086, 2792
BanI GGYRCC 3 cut(s) 2352, 2438, 2513
BanII GRGCYC 2 cut(s) 18, 1022
BauI CACGAG 2 cut(s) 1538, 2518
Bbv12I GWGCWC 2 cut(s) 154, 2497
BbvI GCAGC 5 cut(s) 41, 619, 2187, 2653, 2776
BceAI ACGGC 3 cut(s) 367, 602, 1434
BcgI CGANNNNNNTGC 2 cut(s) 8, 42
BciT130I CCWGG 9 cut(s) 594, 758, 860, 912, 1755, 1876, 2034, 2436, 2773
BciVI GTATCC 1 cut(s) 499
BcoDI GTCTC 6 cut(s) 452, 1695, 2130, 2283, 2515, 2705
BcuI ACTAGT 1 cut(s) 2584
BfaI CTAG 4 cut(s) 210, 821, 2006, 2585
BfmI CTRYAG 3 cut(s) 2101, 2576, 2634
BfuI GTATCC 1 cut(s) 499
BglII AGATCT 1 cut(s) 1301
BisI GCNGC 6 cut(s) 30, 633, 2061, 2201, 2667, 2765
BlnI CCTAGG 1 cut(s) 2005
BlpI GCTNAGC 1 cut(s) 1923
BlsI GCNGC 6 cut(s) 31, 634, 2062, 2202, 2668, 2766
Bme1390I CCNGG 9 cut(s) 594, 758, 860, 912, 1755, 1876, 2034, 2436, 2773
Bme18I GGWCC 1 cut(s) 914
BmeT110I CYCGRG 1 cut(s) 2074
BmgBI CACGTC 1 cut(s) 1697
BmgT120I GGNCC 2 cut(s) 914, 1814
BmiI GGNNCC 4 cut(s) 1992, 2354, 2440, 2515
BmrFI CCNGG 9 cut(s) 594, 758, 860, 912, 1755, 1876, 2034, 2436, 2773
BmsI GCATC 6 cut(s) 652, 740, 746, 2117, 2692, 2714
BplI GAGNNNNNCTC 2 cut(s) 2512, 2544
BpmI CTGGAG 2 cut(s) 521, 2766
Bpu1102I GCTNAGC 1 cut(s) 1923
Bpu14I TTCGAA 1 cut(s) 2116
BpuEI CTTGAG 4 cut(s) 138, 1108, 1262, 1422
BsaAI YACGTR 2 cut(s) 327, 1403
BsaBI GATNNNNATC 1 cut(s) 2484
BsaHI GRCGYC 1 cut(s) 589
BsaI GGTCTC 1 cut(s) 2515
BsaWI WCCGGW 2 cut(s) 1786, 2239
BsaXI ACNNNNNCTCC 4 cut(s) 801, 831, 2110, 2140
Bsc4I CCNNNNNNNGG 7 cut(s) 350, 1508, 1509, 1708, 2011, 2103, 2104
Bse1I ACTGG 7 cut(s) 917, 977, 1051, 1314, 2038, 2313, 2756
Bse3DI GCAATG 3 cut(s) 101, 143, 1489
Bse8I GATNNNNATC 1 cut(s) 2484
BseAI TCCGGA 1 cut(s) 1786
BseBI CCWGG 9 cut(s) 594, 758, 860, 912, 1755, 1876, 2034, 2436, 2773
BseJI GATNNNNATC 1 cut(s) 2484
BseLI CCNNNNNNNGG 7 cut(s) 350, 1508, 1509, 1708, 2011, 2103, 2104
BseMI GCAATG 3 cut(s) 101, 143, 1489
BseMII CTCAG 7 cut(s) 396, 695, 1830, 2135, 2393, 2426, 2700
BseNI ACTGG 7 cut(s) 917, 977, 1051, 1314, 2038, 2313, 2756
BseRI GAGGAG 2 cut(s) 234, 825
BseSI GKGCMC 3 cut(s) 1702, 2357, 2497
BseXI GCAGC 5 cut(s) 41, 619, 2187, 2653, 2776
BsgI GTGCAG 1 cut(s) 847
Bsh1236I CGCG 2 cut(s) 672, 2063
BshFI GGCC 8 cut(s) 219, 867, 1449, 1815, 2037, 2086, 2501, 2792
BshNI GGYRCC 3 cut(s) 2352, 2438, 2513
BsiHKAI GWGCWC 2 cut(s) 154, 2497
BsiHKCI CYCGRG 1 cut(s) 2074
BsiSI CCGG 3 cut(s) 1787, 2240, 2502
BslFI GGGAC 2 cut(s) 327, 2744
BslI CCNNNNNNNGG 7 cut(s) 350, 1508, 1509, 1708, 2011, 2103, 2104
BsmAI GTCTC 6 cut(s) 452, 1695, 2130, 2283, 2515, 2705
BsmFI GGGAC 2 cut(s) 327, 2744
BsmI GAATGC 1 cut(s) 2590
BsnI GGCC 8 cut(s) 219, 867, 1449, 1815, 2037, 2086, 2501, 2792
Bso31I GGTCTC 1 cut(s) 2515
BsoBI CYCGRG 1 cut(s) 2074
Bsp119I TTCGAA 1 cut(s) 2116
Bsp1286I GDGCHC 6 cut(s) 18, 154, 1022, 1702, 2357, 2497
Bsp13I TCCGGA 1 cut(s) 1786
Bsp1720I GCTNAGC 1 cut(s) 1923
Bsp19I CCATGG 2 cut(s) 1817, 2725
BspACI CCGC 8 cut(s) 672, 1513, 1584, 1825, 2061, 2063, 2098, 2762
BspANI GGCC 8 cut(s) 219, 867, 1449, 1815, 2037, 2086, 2501, 2792
BspCNI CTCAG 7 cut(s) 397, 696, 1831, 2134, 2392, 2425, 2701
BspEI TCCGGA 1 cut(s) 1786
BspFNI CGCG 2 cut(s) 672, 2063
BspLI GGNNCC 4 cut(s) 1992, 2354, 2440, 2515
BspMAI CTGCAG 1 cut(s) 2580
BspMI ACCTGC 1 cut(s) 43
BspPI GGATC 5 cut(s) 46, 779, 950, 2250, 2319
BspT104I TTCGAA 1 cut(s) 2116
BspT107I GGYRCC 3 cut(s) 2352, 2438, 2513
BspTNI GGTCTC 1 cut(s) 2515
BsrDI GCAATG 3 cut(s) 101, 143, 1489
BsrI ACTGG 7 cut(s) 917, 977, 1051, 1314, 2038, 2313, 2756
BssNAI GTATAC 1 cut(s) 1275
BssNI GRCGYC 1 cut(s) 589
BssSI CACGAG 2 cut(s) 1538, 2518
BssT1I CCWWGG 5 cut(s) 220, 1817, 1986, 2005, 2725
Bst1107I GTATAC 1 cut(s) 1275
Bst2BI CACGAG 2 cut(s) 1538, 2518
Bst2UI CCWGG 9 cut(s) 594, 758, 860, 912, 1755, 1876, 2034, 2436, 2773
Bst4CI ACNGT 8 cut(s) 457, 1138, 1173, 1272, 1689, 1767, 1860, 2154
Bst6I CTCTTC 4 cut(s) 437, 572, 1299, 1671
BstACI GRCGYC 1 cut(s) 589
BstBAI YACGTR 2 cut(s) 327, 1403
BstBI TTCGAA 1 cut(s) 2116
BstC8I GCNNGC 5 cut(s) 150, 1058, 1461, 1588, 2329
BstDSI CCRYGG 3 cut(s) 1817, 2061, 2725
BstFNI CGCG 2 cut(s) 672, 2063
BstHHI GCGC 1 cut(s) 198
BstMAI GTCTC 6 cut(s) 452, 1695, 2130, 2283, 2515, 2705
BstMWI GCNNNNNNNGC 4 cut(s) 2034, 2663, 2761, 2773
BstNI CCWGG 9 cut(s) 594, 758, 860, 912, 1755, 1876, 2034, 2436, 2773
BstNSI RCATGY 3 cut(s) 101, 737, 1410
BstSCI CCNGG 9 cut(s) 592, 756, 858, 910, 1753, 1874, 2032, 2434, 2771
BstSFI CTRYAG 3 cut(s) 2101, 2576, 2634
BstSLI GKGCMC 3 cut(s) 1702, 2357, 2497
BstSNI TACGTA 1 cut(s) 327
BstUI CGCG 2 cut(s) 672, 2063
BstV1I GCAGC 5 cut(s) 41, 619, 2187, 2653, 2776
BstX2I RGATCY 2 cut(s) 955, 1301
BstXI CCANNNNNNTGG 1 cut(s) 1978
BstYI RGATCY 2 cut(s) 955, 1301
BstZ17I GTATAC 1 cut(s) 1275
BsuI GTATCC 1 cut(s) 499
BsuRI GGCC 8 cut(s) 219, 867, 1449, 1815, 2037, 2086, 2501, 2792
BtgI CCRYGG 3 cut(s) 1817, 2061, 2725
BtgZI GCGATG 1 cut(s) 1145
BtrI CACGTC 1 cut(s) 1697
BtsI GCAGTG 3 cut(s) 2087, 2622, 2757
BtsIMutI CAGTG 6 cut(s) 1307, 1865, 2087, 2150, 2622, 2757
Cac8I GCNNGC 5 cut(s) 150, 1058, 1461, 1588, 2329
CfoI GCGC 1 cut(s) 198
Cfr13I GGNCC 2 cut(s) 914, 1814
Cfr42I CCGCGG 1 cut(s) 2064
CseI GACGC 2 cut(s) 578, 1211
CsiI ACCWGGT 1 cut(s) 2434
Csp6I GTAC 4 cut(s) 2439, 2514, 2608, 2619
CspCI CAANNNNNGTGG 2 cut(s) 2346, 2381
CviQI GTAC 4 cut(s) 2439, 2514, 2608, 2619
DraI TTTAAA 1 cut(s) 180
DraIII CACNNNGTG 2 cut(s) 1592, 1860
EaeI YGGCCR 3 cut(s) 2035, 2084, 2790
Eam1104I CTCTTC 4 cut(s) 437, 572, 1299, 1671
EarI CTCTTC 4 cut(s) 437, 572, 1299, 1671
Eco105I TACGTA 1 cut(s) 327
Eco130I CCWWGG 5 cut(s) 220, 1817, 1986, 2005, 2725
Eco147I AGGCCT 1 cut(s) 219
Eco24I GRGCYC 2 cut(s) 18, 1022
Eco31I GGTCTC 1 cut(s) 2515
Eco32I GATATC 1 cut(s) 718
Eco47I GGWCC 1 cut(s) 914
Eco57I CTGAAG 3 cut(s) 832, 1016, 2798
Eco88I CYCGRG 1 cut(s) 2074
EcoRII CCWGG 9 cut(s) 592, 756, 858, 910, 1753, 1874, 2032, 2434, 2771
EcoRV GATATC 1 cut(s) 718
EcoT14I CCWWGG 5 cut(s) 220, 1817, 1986, 2005, 2725
EcoT22I ATGCAT 3 cut(s) 103, 739, 2707
EcoT38I GRGCYC 2 cut(s) 18, 1022
ErhI CCWWGG 5 cut(s) 220, 1817, 1986, 2005, 2725
FalI AAGNNNNNCTT 2 cut(s) 434, 466
FaqI GGGAC 2 cut(s) 327, 2744
FauI CCCGC 2 cut(s) 2105, 2769
FblI GTMKAC 1 cut(s) 1274
Fnu4HI GCNGC 6 cut(s) 30, 633, 2061, 2201, 2667, 2765
FriOI GRGCYC 2 cut(s) 18, 1022
Fsp4HI GCNGC 6 cut(s) 30, 633, 2061, 2201, 2667, 2765
FspBI CTAG 4 cut(s) 210, 821, 2006, 2585
GlaI GCGC 1 cut(s) 197
GluI GCNGC 6 cut(s) 30, 633, 2061, 2201, 2667, 2765
GsuI CTGGAG 2 cut(s) 521, 2766
HaeIII GGCC 8 cut(s) 219, 867, 1449, 1815, 2037, 2086, 2501, 2792
HapII CCGG 3 cut(s) 1787, 2240, 2502
HgaI GACGC 2 cut(s) 578, 1211
HhaI GCGC 1 cut(s) 198
Hin1I GRCGYC 1 cut(s) 589
Hin6I GCGC 1 cut(s) 196
HinP1I GCGC 1 cut(s) 196
HincII GTYRAC 2 cut(s) 271, 1576
HindII GTYRAC 2 cut(s) 271, 1576
HindIII AAGCTT 2 cut(s) 844, 1925
HpaI GTTAAC 2 cut(s) 271, 1576
HpaII CCGG 3 cut(s) 1787, 2240, 2502
HphI GGTGA 4 cut(s) 560, 1400, 2380, 2409
Hpy166II GTNNAC 9 cut(s) 271, 388, 1083, 1275, 1391, 1576, 2237, 2495, 2608
Hpy188III TCNNGA 8 cut(s) 170, 500, 677, 1031, 1540, 1692, 1787, 2296
Hpy8I GTNNAC 9 cut(s) 271, 388, 1083, 1275, 1391, 1576, 2237, 2495, 2608
Hpy99I CGWCG 2 cut(s) 1698, 2555
HpyAV CCTTC 8 cut(s) 363, 412, 643, 1439, 1633, 1977, 2177, 2773
HpyCH4III ACNGT 8 cut(s) 457, 1138, 1173, 1272, 1689, 1767, 1860, 2154
HpyCH4IV ACGT 7 cut(s) 273, 326, 608, 1402, 1696, 2553, 2787
HpyF10VI GCNNNNNNNGC 4 cut(s) 2034, 2663, 2761, 2773
HpySE526I ACGT 7 cut(s) 273, 326, 608, 1402, 1696, 2553, 2787
Hsp92I GRCGYC 1 cut(s) 589
HspAI GCGC 1 cut(s) 196
Kpn2I TCCGGA 1 cut(s) 1786
KpnI GGTACC 2 cut(s) 2442, 2517
KspAI GTTAAC 2 cut(s) 271, 1576
KspI CCGCGG 1 cut(s) 2064
LmnI GCTCC 5 cut(s) 1468, 1873, 1996, 2647, 2747
Lsp1109I GCAGC 5 cut(s) 41, 619, 2187, 2653, 2776
LweI GCATC 6 cut(s) 652, 740, 746, 2117, 2692, 2714
MabI ACCWGGT 1 cut(s) 2434
MaeI CTAG 4 cut(s) 210, 821, 2006, 2585
MaeII ACGT 7 cut(s) 273, 326, 608, 1402, 1696, 2553, 2787
MaeIII GTNAC 5 cut(s) 274, 322, 1132, 1852, 2415
MfeI CAATTG 3 cut(s) 204, 654, 1419
MflI RGATCY 2 cut(s) 955, 1301
MhlI GDGCHC 6 cut(s) 18, 154, 1022, 1702, 2357, 2497
MlsI TGGCCA 3 cut(s) 2037, 2086, 2792
MluNI TGGCCA 3 cut(s) 2037, 2086, 2792
MlyI GAGTC 7 cut(s) 235, 393, 454, 565, 689, 2285, 2689
MmeI TCCRAC 5 cut(s) 787, 963, 1189, 2022, 2526
Mph1103I ATGCAT 3 cut(s) 103, 739, 2707
MroI TCCGGA 1 cut(s) 1786
MscI TGGCCA 3 cut(s) 2037, 2086, 2792
MslI CAYNNNNRTG 5 cut(s) 312, 1439, 1976, 2535, 2675
Msp20I TGGCCA 3 cut(s) 2037, 2086, 2792
MspA1I CMGCKG 2 cut(s) 2063, 2567
MspI CCGG 3 cut(s) 1787, 2240, 2502
MspR9I CCNGG 9 cut(s) 594, 758, 860, 912, 1755, 1876, 2034, 2436, 2773
MunI CAATTG 3 cut(s) 204, 654, 1419
Mva1269I GAATGC 1 cut(s) 2590
MvaI CCWGG 9 cut(s) 594, 758, 860, 912, 1755, 1876, 2034, 2436, 2773
MvnI CGCG 2 cut(s) 672, 2063
MwoI GCNNNNNNNGC 4 cut(s) 2034, 2663, 2761, 2773
NcoI CCATGG 2 cut(s) 1817, 2725
NlaIV GGNNCC 4 cut(s) 1992, 2354, 2440, 2515
NmuCI GTSAC 4 cut(s) 274, 1132, 1852, 2415
NsiI ATGCAT 3 cut(s) 103, 739, 2707
NspI RCATGY 3 cut(s) 101, 737, 1410
NspV TTCGAA 1 cut(s) 2116
OliI CACNNNNGTG 1 cut(s) 1439
PaeR7I CTCGAG 1 cut(s) 2074
PasI CCCWGGG 1 cut(s) 859
PceI AGGCCT 1 cut(s) 219
PctI GAATGC 1 cut(s) 2590
PfeI GAWTC 5 cut(s) 5, 834, 1681, 1831, 2147
PflFI GACNNNGTC 1 cut(s) 383
PfoI TCCNGGA 1 cut(s) 1753
PkrI GCNGC 6 cut(s) 31, 634, 2062, 2202, 2668, 2766
PleI GAGTC 7 cut(s) 235, 392, 453, 564, 688, 2284, 2688
PpsI GAGTC 7 cut(s) 235, 392, 453, 564, 688, 2284, 2688
Ppu21I YACGTR 2 cut(s) 327, 1403
PshBI ATTAAT 2 cut(s) 1203, 1917
Psp1406I AACGTT 1 cut(s) 608
Psp6I CCWGG 9 cut(s) 592, 756, 858, 910, 1753, 1874, 2032, 2434, 2771
PspGI CCWGG 9 cut(s) 592, 756, 858, 910, 1753, 1874, 2032, 2434, 2771
PspN4I GGNNCC 4 cut(s) 1992, 2354, 2440, 2515
PspPI GGNCC 2 cut(s) 914, 1814
PspXI VCTCGAGB 1 cut(s) 2074
PsrI GAACNNNNNNTAC 2 cut(s) 1383, 1415
PstI CTGCAG 1 cut(s) 2580
PsuI RGATCY 2 cut(s) 955, 1301
PsyI GACNNNGTC 1 cut(s) 383
PvuII CAGCTG 1 cut(s) 2567
RsaI GTAC 4 cut(s) 2440, 2515, 2609, 2620
RsaNI GTAC 4 cut(s) 2439, 2514, 2608, 2619
RseI CAYNNNNRTG 5 cut(s) 312, 1439, 1976, 2535, 2675
SacII CCGCGG 1 cut(s) 2064
SatI GCNGC 6 cut(s) 30, 633, 2061, 2201, 2667, 2765
Sau96I GGNCC 2 cut(s) 914, 1814
SchI GAGTC 7 cut(s) 235, 393, 454, 565, 689, 2285, 2689
ScrFI CCNGG 9 cut(s) 594, 758, 860, 912, 1755, 1876, 2034, 2436, 2773
SduI GDGCHC 6 cut(s) 18, 154, 1022, 1702, 2357, 2497
SexAI ACCWGGT 1 cut(s) 2434
SfaNI GCATC 6 cut(s) 652, 740, 746, 2117, 2692, 2714
SfcI CTRYAG 3 cut(s) 2101, 2576, 2634
Sfr274I CTCGAG 1 cut(s) 2074
Sfr303I CCGCGG 1 cut(s) 2064
SfuI TTCGAA 1 cut(s) 2116
SgrBI CCGCGG 1 cut(s) 2064
SinI GGWCC 1 cut(s) 914
SlaI CTCGAG 1 cut(s) 2074
SmiMI CAYNNNNRTG 5 cut(s) 312, 1439, 1976, 2535, 2675
SmlI CTYRAG 5 cut(s) 153, 1087, 1241, 1437, 2074
SmoI CTYRAG 5 cut(s) 153, 1087, 1241, 1437, 2074
SnaBI TACGTA 1 cut(s) 327
SpeI ACTAGT 1 cut(s) 2584
SseBI AGGCCT 1 cut(s) 219
SsiI CCGC 8 cut(s) 672, 1513, 1584, 1825, 2061, 2063, 2098, 2762
SspMI CTAG 4 cut(s) 210, 821, 2006, 2585
StuI AGGCCT 1 cut(s) 219
StyD4I CCNGG 9 cut(s) 592, 756, 858, 910, 1753, 1874, 2032, 2434, 2771
StyI CCWWGG 5 cut(s) 220, 1817, 1986, 2005, 2725
TaaI ACNGT 8 cut(s) 457, 1138, 1173, 1272, 1689, 1767, 1860, 2154
TaiI ACGT 7 cut(s) 276, 329, 611, 1405, 1699, 2556, 2790
TaqI TCGA 4 cut(s) 1693, 2075, 2116, 2136
TauI GCSGC 1 cut(s) 2063
TfiI GAWTC 5 cut(s) 5, 834, 1681, 1831, 2147
TscAI CASTG 6 cut(s) 1314, 1865, 2087, 2157, 2629, 2757
TseFI GTSAC 4 cut(s) 274, 1132, 1852, 2415
TseI GCWGC 5 cut(s) 29, 632, 2200, 2666, 2764
Tsp45I GTSAC 4 cut(s) 274, 1132, 1852, 2415
TspDTI ATGAA 7 cut(s) 345, 579, 662, 1652, 1759, 2196, 2706
TspGWI ACGGA 3 cut(s) 78, 310, 1601
TspRI CASTG 6 cut(s) 1314, 1865, 2087, 2157, 2629, 2757
Tth111I GACNNNGTC 1 cut(s) 383
VneI GTGCAC 1 cut(s) 2493
VpaK11BI GGWCC 1 cut(s) 914
VspI ATTAAT 2 cut(s) 1203, 1917
XceI RCATGY 3 cut(s) 101, 737, 1410
XhoI CTCGAG 1 cut(s) 2074
XmaJI CCTAGG 1 cut(s) 2005
XmiI GTMKAC 1 cut(s) 1274
XspI CTAG 4 cut(s) 210, 821, 2006, 2585
Zsp2I ATGCAT 3 cut(s) 103, 739, 2707
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.