Rh5CG364700

Belongs to the argonaute family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0006994
Physical Location & Seq
Reverse (-)
43905624 .. 43913467
7844 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG364700.1

Sequence Viewer

Length: 3039 bp
ATGATGAGTGTAATTTGTTATTGTTTTTTAAGTAGGTGTTTAGTGGCAGTGTCCTGCTCTAGTTTTGTATCTCCACTTTTGGGAAGCAGTTCTGTTTTATTTGTAGATTATTTGGTCCGTTGTGGTTTTGATTTCTTCTGTAAAGCTATTGCCGAGTTTGTGTTTTATCCCTCCATTCAGTTGTCTGGTTATTGCATGCTACCTCATTCACATATTAACAAGGCTATGGATTCATTTGAGCCCGATGGAAATGGGGCAAATGGATCAAATGGAGAGAACGGGGCAAATGGAGAAAACGGGGCAAATGGAAACGGGGCAGAACATGCATTGCCACCCCCACCCCCTGTTATCCCACCAGATGTTGTTCCATTGCTTGCTCAAGCAGATATTACACCTGAACCTTTAAAGAAGAAGATTGTGCGCCTACCAATTGCTAGGCGAGGCCTTGGAACAAAAGGGCAAAAGATTCCTCTGCTGACTAATCACTTCAAAGTTAACGTCACTAATAATAACAAAGAAGATCACTTCTTCCATTATAGTGTTTCCGTCATGTATGAAGATGGTCGTCCCCTTGACGGCAAGGGTGCTGGAAGAAGGATAATTGAGAGAGTCCACCAGACTTATATCGCTGAGTTAGGTGGAAAGGACTTTGCTTATGATGGGGAGAAGAGTCTGTTTACTGTTGGTTCGCTTCCACGCAACAAACTTGAATTTTCAGTTGTTCTGGAGGATACACCATCAAACAGAAATAATGGAAATTGTAATGCCGATGGTGATGGGAGTCCTAATGAAAGTGATCGGAAGAGGCTACGGCGTCCAGGTCGTTCCAAAACGTTCAATGTTGAAATTAGCTATGCTGCAAAAATTCCCATGAAGGCAATTGGAGATGCTCTACGCGGTCAGGAGTCAGAAAACTCCCAAGAGGCTCTGAGAGTGCTGGATATCATATTAAGGCAACATGCATCTAAGCAAGGATGCCTCCTGGTTCGTCAATCTTTCTTCCATAATGATCCAAAAAGTTTTGTTGATGTTGGAGGAGGTGTTCTAGGGTGCAGAGGATTCCATTCAAGCTTCAGAACCACCCAGGGTGGCCTGTCGTTGAACATTGATGTATCAACTACCATGATAATACAGCCTGGACCAGTTGTTGATTTTCTAATTTCCAACCAGAATGTTAGAGATCCCTTTTCACTTGACTGGACAAAGGCTAAGAGAACTCTGAAGAATTTGAGGGTTAAAACGAGCCCAACCAATCTGGAATACAAGATAACTGGATTGAGCGAGCGACCATGCAAAGAGCAAATGTTTACCTTGAGAAACAAAAATGCAAAGGACGGGGAGGATGGAGAAATTGAAGTGACTGTTTATGACTATTTTGTTAATCATCGCAATATACAGTTGCGTTATTCTGGCGATCTGCCCTGCATTAATGTTGGGAAGCCAAAGCGTCCTACTTACATTCCCCTTGAGCTATGTGAATTGGTTTCGTTGCAACGGTATACAAAAGCACTTTCAACTCTTCAAAGATCTTCACTGGTGGAGAAGTCGAGGCAAAAGCCACAGGAGAGGATGAGCATTTTGTCTAATGCTTTGAAAATCAACAATTATGATGCTGAACCTATGCTACGTGCATGTGGTGTATCAATTGGTAATAGTTTCACTCAAGTGGATGGCCGTGTTTTGCCTGCTCCAAAGTTAAAAGTTGGCAATGGGGATGATTTCTTCCCCAGAAATGGGCGGTGGAATTTCAACAATAAGAAACTCGTGAAGCCTACTAAGATAGAACGATGGGTTGTTGTTAACTTCTCCGCACGCTGTGATCTAAAAGCCCTTGTCCGTGATTTGATTAAATGTGGAGATATGAAGGGAATTGCCATAGACCCTCCATTTGATGTTTTTGAAGAGAATCCACAGTCTCGACGTGCCCCACCTCTGGTTAGGGTTGAGAGAATGTTTGAGGATATTCAATCCAAACTTCCTGGACAACCACAGTTCATTCTCTGTTTGCTTCCGGAGAGGAAAAATTCTGCTCTATATGGCCCATGGAAGCGGAAGAATCTGGCTGAGTATGGTATTGTCACACAGTGCATAGCTCCTACCAGGGTCAATGACCAATATCTTACAAATGTTCTGCTAAAAATTAATGCTAAGCTTGGTGGATTAAATTCCTTGTTGGCTGTTGAGTTTTCTCCTTCCATTCCTGTGGTTTCCAAGGCTCCTACCATCATCCTAGGGATGGATGTGTCGCATGGCTCTCCTGGCCAGTCGGACATACCATCAATAGCCGCGGTAGTCAGCTCGAGGCACTGGCCACTCATTTCCCGCTATAGGGCATCTGTTCGAACTCAGTCTCCAAAGGTCGAAATGATTGATTCACTGTTCAAGCGTGTTTCTGATACAGAAGATGACGGCATTATGAGAGAGCTGCTTTTGGACTTCTATACAAGTTCAAATAAGCGTAAACCGGATCAGATAATCATATTCAGGGATGGTGTCAGCGAGTCTCAATTCAACCAAGTCTTGAACATTGAACTGGATCAAATCATTGAGGCGTGCAAGTTCCTTGACGAGAGTTGGTGCCCAAAATTTGTGGTGATTATCGCTCAGAAAAACCACCATACAAAATTCTTTCAGCCTCAGTCACCTGATAATGTTCCACCTGGGACCATTATTGACAACAGAATTTGTCATCCAAAGAACAATGATTTTTATCTCTGTGCACAGGCCGGAATGATAGGTACCACGAGACCTACTCATTATCATGTTCTGTTGGACGACGTTGGGTTTTCAGCTGATGATCTGCAGGAACTAGTGCATTCTCTATCCTATGTGTACCAGAGAAGTACCACTGCCATTTCTGTCGTTGCACCGATTTGCTATGCTCATCTCGCTGCCACTCAAATGAGTCAGTTTGTGAAATTTGAAGATGCATCTGAGACTTCCTCAAGCCATGGTGGGCTGACCTCTGCTGGAGCAGTGCCAGTCCCGCAGCTTCCCAGGCTGAAGGAGAACGTGGCCAATTCCATGTTTTTCTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003682 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005719 GO:0005730 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0008150 GO:0008152 GO:0008213 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0009814 GO:0009816 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0015030 GO:0016032 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016604 GO:0016787 GO:0016788 GO:0018022 GO:0018193 GO:0018205 GO:0019048 GO:0019219 GO:0019222 GO:0019538 GO:0030422 GO:0031047 GO:0031048 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0034641 GO:0034968 GO:0035194 GO:0035197 GO:0035198 GO:0035821 GO:0036211 GO:0040029 GO:0042221 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0043412 GO:0043414 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044728 GO:0045087 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051567 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0060255 GO:0061647 GO:0061980 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0070919 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0098542 GO:0140098 GO:1901360 GO:1901363 GO:1901564 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

1012

Amino Acids

112.54

Weight (kDa)

8.78

Isoelectric Point (pI)

45.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ArgoN PF16486 154 - 317 1.6e-29 N-terminal domain of argonaute
ArgoL1 PF08699 329 - 378 1.4e-18 Argonaute linker 1 domain
PAZ PF02170 383 - 512 6.4e-31 PAZ domain
ArgoL2 PF16488 522 - 567 4.6e-13 Argonaute linker 2 domain
Piwi PF02171 665 - 973 2.4e-105 Piwi domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 2738
AccB1I GGYRCC 2 cut(s) 2577, 2738
AccI GTMKAC 1 cut(s) 1499
AccII CGCG 2 cut(s) 897, 2288
AccIII TCCGGA 1 cut(s) 2011
AciI CCGC 8 cut(s) 897, 1738, 1809, 2050, 2286, 2288, 2323, 2987
AclI AACGTT 1 cut(s) 833
AclWI GGATC 5 cut(s) 271, 1004, 1175, 2475, 2544
AcoI YGGCCR 4 cut(s) 1672, 2260, 2309, 3015
AcuI CTGAAG 3 cut(s) 1057, 1241, 3023
AcyI GRCGYC 1 cut(s) 814
AdeI CACNNNGTG 2 cut(s) 1817, 2085
AfaI GTAC 3 cut(s) 2740, 2834, 2845
AfiI CCNNNNNNNGG 8 cut(s) 80, 575, 1733, 1734, 1933, 2236, 2328, 2329
AhlI ACTAGT 1 cut(s) 2809
AjiI CACGTC 1 cut(s) 1922
AjnI CCWGG 9 cut(s) 817, 981, 1083, 1135, 1978, 2099, 2257, 2659, 2996
AleI CACNNNNGTG 1 cut(s) 1664
AloI GAACNNNNNNTCC 4 cut(s) 1026, 1058, 2335, 2367
Alw21I GWGCWC 1 cut(s) 2722
Alw26I GTCTC 5 cut(s) 1920, 2355, 2508, 2740, 2930
Alw44I GTGCAC 1 cut(s) 2718
AlwI GGATC 5 cut(s) 271, 1004, 1175, 2475, 2544
Ama87I CYCGRG 1 cut(s) 2299
Aor13HI TCCGGA 1 cut(s) 2011
AoxI GGCC 8 cut(s) 442, 1090, 1672, 2038, 2260, 2309, 2724, 3015
ApaLI GTGCAC 1 cut(s) 2718
ApeKI GCWGC 4 cut(s) 857, 2425, 2891, 2989
ArsI GACNNNNNNTTYG 4 cut(s) 483, 515, 1871, 1903
AseI ATTAAT 2 cut(s) 1428, 2142
Asp700I GAANNNNTTC 1 cut(s) 88
Asp718I GGTACC 1 cut(s) 2738
AspA2I CCTAGG 1 cut(s) 2230
AspLEI GCGC 1 cut(s) 423
AspS9I GGNCC 4 cut(s) 115, 1139, 2039, 2664
AsuHPI GGTGA 3 cut(s) 785, 2605, 2634
AsuII TTCGAA 1 cut(s) 2341
AvaI CYCGRG 1 cut(s) 2299
AvaII GGWCC 3 cut(s) 115, 1139, 2664
AvrII CCTAGG 1 cut(s) 2230
BaeGI GKGCMC 3 cut(s) 1927, 2582, 2722
BalI TGGCCA 3 cut(s) 2262, 2311, 3017
BanI GGYRCC 2 cut(s) 2577, 2738
BanII GRGCYC 2 cut(s) 243, 1247
BauI CACGAG 2 cut(s) 1763, 2743
Bbv12I GWGCWC 1 cut(s) 2722
BbvI GCAGC 4 cut(s) 844, 2412, 2878, 3001
BceAI ACGGC 4 cut(s) 592, 827, 1659, 2425
BciT130I CCWGG 9 cut(s) 819, 983, 1085, 1137, 1980, 2101, 2259, 2661, 2998
BciVI GTATCC 1 cut(s) 724
BcoDI GTCTC 5 cut(s) 1920, 2355, 2508, 2740, 2930
BcuI ACTAGT 1 cut(s) 2809
BfaI CTAG 5 cut(s) 60, 435, 1046, 2231, 2810
BfmI CTRYAG 2 cut(s) 2326, 2801
BfuI GTATCC 1 cut(s) 724
BglII AGATCT 1 cut(s) 1526
BisI GCNGC 5 cut(s) 858, 2286, 2426, 2892, 2990
BlnI CCTAGG 1 cut(s) 2230
BlpI GCTNAGC 1 cut(s) 2148
BlsI GCNGC 5 cut(s) 859, 2287, 2427, 2893, 2991
Bme1390I CCNGG 9 cut(s) 819, 983, 1085, 1137, 1980, 2101, 2259, 2661, 2998
Bme18I GGWCC 3 cut(s) 115, 1139, 2664
BmeT110I CYCGRG 1 cut(s) 2299
BmgBI CACGTC 1 cut(s) 1922
BmgT120I GGNCC 4 cut(s) 115, 1139, 2039, 2664
BmiI GGNNCC 4 cut(s) 2217, 2579, 2665, 2740
BmrFI CCNGG 9 cut(s) 819, 983, 1085, 1137, 1980, 2101, 2259, 2661, 2998
BmsI GCATC 7 cut(s) 877, 965, 971, 1600, 2342, 2917, 2939
BplI GAGNNNNNCTC 4 cut(s) 2737, 2769, 2927, 2959
BpmI CTGGAG 2 cut(s) 746, 2991
Bpu1102I GCTNAGC 1 cut(s) 2148
Bpu14I TTCGAA 1 cut(s) 2341
BpuEI CTTGAG 5 cut(s) 363, 1333, 1487, 1647, 2929
BsaAI YACGTR 1 cut(s) 1628
BsaBI GATNNNNATC 1 cut(s) 2709
BsaHI GRCGYC 1 cut(s) 814
BsaI GGTCTC 1 cut(s) 2740
BsaWI WCCGGW 2 cut(s) 2011, 2464
BsaXI ACNNNNNCTCC 4 cut(s) 1026, 1056, 2335, 2365
Bsc4I CCNNNNNNNGG 8 cut(s) 80, 575, 1733, 1734, 1933, 2236, 2328, 2329
Bse1I ACTGG 8 cut(s) 1142, 1202, 1276, 1539, 2263, 2312, 2538, 2981
Bse3DI GCAATG 3 cut(s) 326, 368, 1714
Bse8I GATNNNNATC 1 cut(s) 2709
BseAI TCCGGA 1 cut(s) 2011
BseBI CCWGG 9 cut(s) 819, 983, 1085, 1137, 1980, 2101, 2259, 2661, 2998
BseJI GATNNNNATC 1 cut(s) 2709
BseLI CCNNNNNNNGG 8 cut(s) 80, 575, 1733, 1734, 1933, 2236, 2328, 2329
BseMI GCAATG 3 cut(s) 326, 368, 1714
BseMII CTCAG 7 cut(s) 621, 920, 2055, 2360, 2618, 2651, 2925
BseNI ACTGG 8 cut(s) 1142, 1202, 1276, 1539, 2263, 2312, 2538, 2981
BseRI GAGGAG 1 cut(s) 1050
BseSI GKGCMC 3 cut(s) 1927, 2582, 2722
BseXI GCAGC 4 cut(s) 844, 2412, 2878, 3001
BsgI GTGCAG 1 cut(s) 1072
Bsh1236I CGCG 2 cut(s) 897, 2288
BshFI GGCC 8 cut(s) 444, 1092, 1674, 2040, 2262, 2311, 2726, 3017
BshNI GGYRCC 2 cut(s) 2577, 2738
BsiHKAI GWGCWC 1 cut(s) 2722
BsiHKCI CYCGRG 1 cut(s) 2299
BsiSI CCGG 3 cut(s) 2012, 2465, 2727
BslFI GGGAC 3 cut(s) 552, 2677, 2969
BslI CCNNNNNNNGG 8 cut(s) 80, 575, 1733, 1734, 1933, 2236, 2328, 2329
BsmAI GTCTC 5 cut(s) 1920, 2355, 2508, 2740, 2930
BsmFI GGGAC 3 cut(s) 552, 2677, 2969
BsmI GAATGC 1 cut(s) 2815
BsnI GGCC 8 cut(s) 444, 1092, 1674, 2040, 2262, 2311, 2726, 3017
Bso31I GGTCTC 1 cut(s) 2740
BsoBI CYCGRG 1 cut(s) 2299
Bsp119I TTCGAA 1 cut(s) 2341
Bsp1286I GDGCHC 5 cut(s) 243, 1247, 1927, 2582, 2722
Bsp13I TCCGGA 1 cut(s) 2011
Bsp1720I GCTNAGC 1 cut(s) 2148
Bsp19I CCATGG 2 cut(s) 2042, 2950
BspACI CCGC 8 cut(s) 897, 1738, 1809, 2050, 2286, 2288, 2323, 2987
BspANI GGCC 8 cut(s) 444, 1092, 1674, 2040, 2262, 2311, 2726, 3017
BspCNI CTCAG 7 cut(s) 622, 921, 2056, 2359, 2617, 2650, 2926
BspEI TCCGGA 1 cut(s) 2011
BspFNI CGCG 2 cut(s) 897, 2288
BspLI GGNNCC 4 cut(s) 2217, 2579, 2665, 2740
BspMAI CTGCAG 1 cut(s) 2805
BspPI GGATC 5 cut(s) 271, 1004, 1175, 2475, 2544
BspT104I TTCGAA 1 cut(s) 2341
BspT107I GGYRCC 2 cut(s) 2577, 2738
BspTNI GGTCTC 1 cut(s) 2740
BsrDI GCAATG 3 cut(s) 326, 368, 1714
BsrI ACTGG 8 cut(s) 1142, 1202, 1276, 1539, 2263, 2312, 2538, 2981
BssNAI GTATAC 1 cut(s) 1500
BssNI GRCGYC 1 cut(s) 814
BssSI CACGAG 2 cut(s) 1763, 2743
BssT1I CCWWGG 5 cut(s) 445, 2042, 2211, 2230, 2950
Bst1107I GTATAC 1 cut(s) 1500
Bst2BI CACGAG 2 cut(s) 1763, 2743
Bst2UI CCWGG 9 cut(s) 819, 983, 1085, 1137, 1980, 2101, 2259, 2661, 2998
Bst4CI ACNGT 8 cut(s) 682, 1363, 1398, 1497, 1914, 1992, 2085, 2379
Bst6I CTCTTC 4 cut(s) 662, 797, 1524, 1896
BstACI GRCGYC 1 cut(s) 814
BstAPI GCANNNNNTGC 1 cut(s) 323
BstBAI YACGTR 1 cut(s) 1628
BstBI TTCGAA 1 cut(s) 2341
BstC8I GCNNGC 6 cut(s) 197, 375, 1283, 1686, 1813, 2554
BstDSI CCRYGG 3 cut(s) 2042, 2286, 2950
BstFNI CGCG 2 cut(s) 897, 2288
BstHHI GCGC 1 cut(s) 423
BstMAI GTCTC 5 cut(s) 1920, 2355, 2508, 2740, 2930
BstMWI GCNNNNNNNGC 5 cut(s) 323, 2259, 2888, 2986, 2998
BstNI CCWGG 9 cut(s) 819, 983, 1085, 1137, 1980, 2101, 2259, 2661, 2998
BstNSI RCATGY 4 cut(s) 199, 326, 962, 1635
BstSCI CCNGG 9 cut(s) 817, 981, 1083, 1135, 1978, 2099, 2257, 2659, 2996
BstSFI CTRYAG 2 cut(s) 2326, 2801
BstSLI GKGCMC 3 cut(s) 1927, 2582, 2722
BstUI CGCG 2 cut(s) 897, 2288
BstV1I GCAGC 4 cut(s) 844, 2412, 2878, 3001
BstX2I RGATCY 2 cut(s) 1180, 1526
BstXI CCANNNNNNTGG 1 cut(s) 2203
BstYI RGATCY 2 cut(s) 1180, 1526
BstZ17I GTATAC 1 cut(s) 1500
BsuI GTATCC 1 cut(s) 724
BsuRI GGCC 8 cut(s) 444, 1092, 1674, 2040, 2262, 2311, 2726, 3017
BtgI CCRYGG 3 cut(s) 2042, 2286, 2950
BtgZI GCGATG 1 cut(s) 1370
BtrI CACGTC 1 cut(s) 1922
BtsI GCAGTG 3 cut(s) 54, 2847, 2982
BtsIMutI CAGTG 7 cut(s) 54, 1532, 2090, 2305, 2375, 2847, 2982
Cac8I GCNNGC 6 cut(s) 197, 375, 1283, 1686, 1813, 2554
CfoI GCGC 1 cut(s) 423
Cfr13I GGNCC 4 cut(s) 115, 1139, 2039, 2664
Cfr42I CCGCGG 1 cut(s) 2289
CseI GACGC 2 cut(s) 803, 1436
Csp6I GTAC 3 cut(s) 2739, 2833, 2844
CspCI CAANNNNNGTGG 2 cut(s) 2571, 2606
CviQI GTAC 3 cut(s) 2739, 2833, 2844
DraI TTTAAA 1 cut(s) 405
DraIII CACNNNGTG 2 cut(s) 1817, 2085
EaeI YGGCCR 4 cut(s) 1672, 2260, 2309, 3015
Eam1104I CTCTTC 4 cut(s) 662, 797, 1524, 1896
EarI CTCTTC 4 cut(s) 662, 797, 1524, 1896
Eco130I CCWWGG 5 cut(s) 445, 2042, 2211, 2230, 2950
Eco147I AGGCCT 1 cut(s) 444
Eco24I GRGCYC 2 cut(s) 243, 1247
Eco31I GGTCTC 1 cut(s) 2740
Eco32I GATATC 1 cut(s) 943
Eco47I GGWCC 3 cut(s) 115, 1139, 2664
Eco57I CTGAAG 3 cut(s) 1057, 1241, 3023
Eco88I CYCGRG 1 cut(s) 2299
EcoRII CCWGG 9 cut(s) 817, 981, 1083, 1135, 1978, 2099, 2257, 2659, 2996
EcoRV GATATC 1 cut(s) 943
EcoT14I CCWWGG 5 cut(s) 445, 2042, 2211, 2230, 2950
EcoT22I ATGCAT 3 cut(s) 328, 964, 2932
EcoT38I GRGCYC 2 cut(s) 243, 1247
ErhI CCWWGG 5 cut(s) 445, 2042, 2211, 2230, 2950
FaqI GGGAC 3 cut(s) 552, 2677, 2969
FauI CCCGC 2 cut(s) 2330, 2994
FblI GTMKAC 1 cut(s) 1499
Fnu4HI GCNGC 5 cut(s) 858, 2286, 2426, 2892, 2990
FriOI GRGCYC 2 cut(s) 243, 1247
Fsp4HI GCNGC 5 cut(s) 858, 2286, 2426, 2892, 2990
FspBI CTAG 5 cut(s) 60, 435, 1046, 2231, 2810
GlaI GCGC 1 cut(s) 422
GluI GCNGC 5 cut(s) 858, 2286, 2426, 2892, 2990
GsuI CTGGAG 2 cut(s) 746, 2991
HaeIII GGCC 8 cut(s) 444, 1092, 1674, 2040, 2262, 2311, 2726, 3017
HapII CCGG 3 cut(s) 2012, 2465, 2727
HgaI GACGC 2 cut(s) 803, 1436
HhaI GCGC 1 cut(s) 423
Hin1I GRCGYC 1 cut(s) 814
Hin6I GCGC 1 cut(s) 421
HinP1I GCGC 1 cut(s) 421
HincII GTYRAC 2 cut(s) 496, 1801
HindII GTYRAC 2 cut(s) 496, 1801
HindIII AAGCTT 2 cut(s) 1069, 2150
HpaI GTTAAC 2 cut(s) 496, 1801
HpaII CCGG 3 cut(s) 2012, 2465, 2727
HphI GGTGA 3 cut(s) 785, 2605, 2634
Hpy166II GTNNAC 9 cut(s) 496, 613, 678, 1308, 1500, 1801, 2462, 2720, 2833
Hpy188III TCNNGA 7 cut(s) 725, 902, 1256, 1765, 1917, 2012, 2521
Hpy8I GTNNAC 9 cut(s) 496, 613, 678, 1308, 1500, 1801, 2462, 2720, 2833
Hpy99I CGWCG 2 cut(s) 1923, 2780
HpyAV CCTTC 5 cut(s) 588, 868, 1858, 2202, 2998
HpyCH4III ACNGT 8 cut(s) 682, 1363, 1398, 1497, 1914, 1992, 2085, 2379
HpyCH4IV ACGT 6 cut(s) 498, 833, 1627, 1921, 2778, 3012
HpyF10VI GCNNNNNNNGC 5 cut(s) 323, 2259, 2888, 2986, 2998
HpySE526I ACGT 6 cut(s) 498, 833, 1627, 1921, 2778, 3012
Hsp92I GRCGYC 1 cut(s) 814
HspAI GCGC 1 cut(s) 421
Kpn2I TCCGGA 1 cut(s) 2011
KpnI GGTACC 1 cut(s) 2742
KspAI GTTAAC 2 cut(s) 496, 1801
KspI CCGCGG 1 cut(s) 2289
LmnI GCTCC 4 cut(s) 1693, 2098, 2221, 2972
Lsp1109I GCAGC 4 cut(s) 844, 2412, 2878, 3001
LweI GCATC 7 cut(s) 877, 965, 971, 1600, 2342, 2917, 2939
MaeI CTAG 5 cut(s) 60, 435, 1046, 2231, 2810
MaeII ACGT 6 cut(s) 498, 833, 1627, 1921, 2778, 3012
MaeIII GTNAC 4 cut(s) 499, 1357, 2077, 2640
MfeI CAATTG 3 cut(s) 429, 879, 1644
MflI RGATCY 2 cut(s) 1180, 1526
MhlI GDGCHC 5 cut(s) 243, 1247, 1927, 2582, 2722
MlsI TGGCCA 3 cut(s) 2262, 2311, 3017
MluNI TGGCCA 3 cut(s) 2262, 2311, 3017
MlyI GAGTC 6 cut(s) 618, 679, 790, 914, 2510, 2914
MmeI TCCRAC 4 cut(s) 1012, 1188, 2247, 2751
Mox20I TGGCCA 3 cut(s) 2262, 2311, 3017
Mph1103I ATGCAT 3 cut(s) 328, 964, 2932
MroI TCCGGA 1 cut(s) 2011
MroXI GAANNNNTTC 1 cut(s) 88
MscI TGGCCA 3 cut(s) 2262, 2311, 3017
MslI CAYNNNNRTG 5 cut(s) 537, 1664, 2201, 2760, 2900
Msp20I TGGCCA 3 cut(s) 2262, 2311, 3017
MspA1I CMGCKG 2 cut(s) 2288, 2792
MspI CCGG 3 cut(s) 2012, 2465, 2727
MspR9I CCNGG 9 cut(s) 819, 983, 1085, 1137, 1980, 2101, 2259, 2661, 2998
MunI CAATTG 3 cut(s) 429, 879, 1644
Mva1269I GAATGC 1 cut(s) 2815
MvaI CCWGG 9 cut(s) 819, 983, 1085, 1137, 1980, 2101, 2259, 2661, 2998
MvnI CGCG 2 cut(s) 897, 2288
MwoI GCNNNNNNNGC 5 cut(s) 323, 2259, 2888, 2986, 2998
NcoI CCATGG 2 cut(s) 2042, 2950
NlaIV GGNNCC 4 cut(s) 2217, 2579, 2665, 2740
NmeAIII GCCGAG 1 cut(s) 178
NmuCI GTSAC 4 cut(s) 499, 1357, 2077, 2640
NsiI ATGCAT 3 cut(s) 328, 964, 2932
NspI RCATGY 4 cut(s) 199, 326, 962, 1635
NspV TTCGAA 1 cut(s) 2341
OliI CACNNNNGTG 1 cut(s) 1664
PaeI GCATGC 1 cut(s) 199
PaeR7I CTCGAG 1 cut(s) 2299
PasI CCCWGGG 1 cut(s) 1084
PceI AGGCCT 1 cut(s) 444
PctI GAATGC 1 cut(s) 2815
PdmI GAANNNNTTC 1 cut(s) 88
PfeI GAWTC 6 cut(s) 230, 466, 1059, 1906, 2056, 2372
PfoI TCCNGGA 1 cut(s) 1978
PkrI GCNGC 5 cut(s) 859, 2287, 2427, 2893, 2991
PleI GAGTC 6 cut(s) 617, 678, 789, 913, 2509, 2913
PpsI GAGTC 6 cut(s) 617, 678, 789, 913, 2509, 2913
Ppu21I YACGTR 1 cut(s) 1628
PshBI ATTAAT 2 cut(s) 1428, 2142
Psp1406I AACGTT 1 cut(s) 833
Psp6I CCWGG 9 cut(s) 817, 981, 1083, 1135, 1978, 2099, 2257, 2659, 2996
PspGI CCWGG 9 cut(s) 817, 981, 1083, 1135, 1978, 2099, 2257, 2659, 2996
PspN4I GGNNCC 4 cut(s) 2217, 2579, 2665, 2740
PspPI GGNCC 4 cut(s) 115, 1139, 2039, 2664
PspXI VCTCGAGB 1 cut(s) 2299
PsrI GAACNNNNNNTAC 2 cut(s) 1608, 1640
PstI CTGCAG 1 cut(s) 2805
PsuI RGATCY 2 cut(s) 1180, 1526
PvuII CAGCTG 1 cut(s) 2792
RsaI GTAC 3 cut(s) 2740, 2834, 2845
RsaNI GTAC 3 cut(s) 2739, 2833, 2844
RseI CAYNNNNRTG 5 cut(s) 537, 1664, 2201, 2760, 2900
SacII CCGCGG 1 cut(s) 2289
SatI GCNGC 5 cut(s) 858, 2286, 2426, 2892, 2990
Sau96I GGNCC 4 cut(s) 115, 1139, 2039, 2664
SchI GAGTC 6 cut(s) 618, 679, 790, 914, 2510, 2914
ScrFI CCNGG 9 cut(s) 819, 983, 1085, 1137, 1980, 2101, 2259, 2661, 2998
SduI GDGCHC 5 cut(s) 243, 1247, 1927, 2582, 2722
SfaNI GCATC 7 cut(s) 877, 965, 971, 1600, 2342, 2917, 2939
SfcI CTRYAG 2 cut(s) 2326, 2801
Sfr274I CTCGAG 1 cut(s) 2299
Sfr303I CCGCGG 1 cut(s) 2289
SfuI TTCGAA 1 cut(s) 2341
SgrBI CCGCGG 1 cut(s) 2289
SinI GGWCC 3 cut(s) 115, 1139, 2664
SlaI CTCGAG 1 cut(s) 2299
SmiMI CAYNNNNRTG 5 cut(s) 537, 1664, 2201, 2760, 2900
SmlI CTYRAG 6 cut(s) 378, 1312, 1466, 1662, 2299, 2944
SmoI CTYRAG 6 cut(s) 378, 1312, 1466, 1662, 2299, 2944
SpeI ACTAGT 1 cut(s) 2809
SphI GCATGC 1 cut(s) 199
SseBI AGGCCT 1 cut(s) 444
SsiI CCGC 8 cut(s) 897, 1738, 1809, 2050, 2286, 2288, 2323, 2987
SspMI CTAG 5 cut(s) 60, 435, 1046, 2231, 2810
StuI AGGCCT 1 cut(s) 444
StyD4I CCNGG 9 cut(s) 817, 981, 1083, 1135, 1978, 2099, 2257, 2659, 2996
StyI CCWWGG 5 cut(s) 445, 2042, 2211, 2230, 2950
TaaI ACNGT 8 cut(s) 682, 1363, 1398, 1497, 1914, 1992, 2085, 2379
TaiI ACGT 6 cut(s) 501, 836, 1630, 1924, 2781, 3015
TaqI TCGA 5 cut(s) 1547, 1918, 2300, 2341, 2361
TauI GCSGC 1 cut(s) 2288
TfiI GAWTC 6 cut(s) 230, 466, 1059, 1906, 2056, 2372
TscAI CASTG 7 cut(s) 54, 1539, 2090, 2312, 2382, 2854, 2982
TseFI GTSAC 4 cut(s) 499, 1357, 2077, 2640
TseI GCWGC 4 cut(s) 857, 2425, 2891, 2989
Tsp45I GTSAC 4 cut(s) 499, 1357, 2077, 2640
TspDTI ATGAA 6 cut(s) 222, 570, 804, 887, 1877, 1984
TspGWI ACGGA 3 cut(s) 107, 535, 1826
TspRI CASTG 7 cut(s) 54, 1539, 2090, 2312, 2382, 2854, 2982
VneI GTGCAC 1 cut(s) 2718
VpaK11BI GGWCC 3 cut(s) 115, 1139, 2664
VspI ATTAAT 2 cut(s) 1428, 2142
XceI RCATGY 4 cut(s) 199, 326, 962, 1635
XhoI CTCGAG 1 cut(s) 2299
XmaJI CCTAGG 1 cut(s) 2230
XmiI GTMKAC 1 cut(s) 1499
XmnI GAANNNNTTC 1 cut(s) 88
XspI CTAG 5 cut(s) 60, 435, 1046, 2231, 2810
Zsp2I ATGCAT 3 cut(s) 328, 964, 2932
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.