Rh5BG339100

Belongs to the argonaute family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0006994
Physical Location & Seq
Reverse (-)
47857575 .. 47868265
10691 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG339100.1

Sequence Viewer

Length: 2925 bp
ATGGCTGATAAAAGATACAGAACAATGATTACACTAGCTTCAAAACCACCGATGCACATTTCCTTAAACAAGTCCACAATCACACGAGTAACCGTCCATCATGTCTCCCGAAGATCGAACGGCCACATCTGCCTAACCGGAGGGAATGAACAGAATCGAACCGCAGAGAAGAGTAGGCGAAGCTTTGGACTTAACGAAAGAGAGACCCAGTATATAAGACCCAACTCGGTCGTGGTTAAAAAGAGAGTTGACGCCCAACCAAACCAAACCCAAACTCCCTCACTCCCAACGAACTCACGTTCTAGGGTTTTCCAGGGATTGCGGAAGCGACACGGCTGTTTGTCTTGTGCTTTTAAGGCTATGGATTCATTTGAGCCCGATGGAAATGCAGCAAATGGATCAAATGGAGAGAACGGGGCAAACGGAGAAAACGGGGCAAATGGAAACGGGGAAGAACATGCATTGCCACCCCCACCCCCTGTTATCCCACCAGATGTTGTTCCATTGCGTGCTCAAGCAGATATTACTCCTGAACCTTTAAAGAAGAAGATCGTGCGCCTACCAATTGCTAGGCGAGGCCTTGGAACAAAAGGGCAAAAGACTCCTCTGCTGACTAATCACTTCAAAGTTAACGTCACTAATAATAACAAAGAAGATCACTTCTTCCATTATAGTGTTTCCGTTACGTATGAAGATGGTCGTCCCCTTGACGGCAAGGGTGCTGGAAGAAGGATAATTGACAGAGTCCACCAGACTTATATCTCTGAGTTAGGTGGGAAGGACTTTGCTTATGATGGGGAGAAGAGTCTCTTTACTGTTGGTTCGCTTCCACGCAACAAACTTGAATTTTCAGTTGTTCTGGAGGATACACCATCAAACAGAAATAATGGAAATTGTAATGCCGATGGTGATGGGAGTCCTAATGAAAGTGATCGGAAGAGGCTACGGCGTCCAGGTCGTTCCAAAACGTTCAATGTTGAAATTAGCTATGCTGCAAAAATTCCCATGAAGGCAATTGGAGATGCTCTACGCGGTCAGGAGTCAGAAAACTCCCAAGAGGCTCTGAGAGTGCTGGATATCATATTAAGGCAACATGCATCTAAGCAAGGATGCCTCCTGGTTCGTCAATCTTTCTTCCATAATGATCCAAAAAGTTTTGTTGATGTTGGAGGAGGTGTTCTAGGGTGCAGAGGATTCCATTCAAGCTTCAGAACCACCCAGGGTGGCCTGTCGTTGAACATTGATGTATCAACTACCATGATAATACAGCCTGGACCAGTTGTTGATTTTCTAATTTCCAACCAGAATGTTAGAGATCCCTTTTCACTTGACTGGACAAAGGCTAAGAGAACTCTGAAGAATTTGAGGGTTAAAACGAGCCCAACCAATCTGGAATACAAGATAACTGGATTGAGCGAGCGACCATGCAAAGAGCAAATGTTTACCTTGAGAAACAAAAATGCAAAGGATGGGGAGGATGGAGAAATTGAAGTGACTGTTTATGACTATTTTGTTAGTCATCGCAATATACAGTTGCGTTATTCTGGCGATCTGCCCTGCATTAATGTTGGAAAGCCAAAGCGTCCTACTTACATTCCCCTTGAGCTATGTGAATTGGTTTCGTTGCAACGGTATACAAAAGCACTTTCAACTCTTCAAAGATCTTCACTGGTGGAGAAGTCAAGGCAAAAGCCACAGGAGAGGATGAGCATTTTGTCTAATGCTTTGAAAATCAACAATTATGATGGTGAACCTATGCTACGTGCATGTGGTGTATCAATTGGTAATAGTTTCACTCAAGTGGAAGGCCGTGTTTTGCCTGCTCCAAAGTTAAAAGTTGGCAATGGGGATGATTTCTTCCCCAGAAATGGGCGGTGGAATTTCAACAATAAGAAACTCGTGAAGCCTACTAAGATAGAACGATGGGTTGTTGTTAACTTCTCCGCACGCTGTGATCTGAAAGCCCTTGTCCGTGATTTGATTAAATGTGGAGATATGAAGGGAATTGCCATAGACCCTCCATTTGATGTTTTTGAAGAGAATCCACAGTCTCGACGTGCCCCACCTCTGGTTAGGGTTGAGAGAATGTTTGAGGATATTCAATCCAAACTTCCTGGACAACCACAGTTCATTCTCTGTTTGCTTCCGGAGAGGAAAAATTCTGCTCTATATGGCCCATGGAAGCGGAAGAATCTGGCTGAGTATGGTATTGTCACACAGTGCATAGCTCCTACCAGGGTCAATGACCAATATCTTACAAATGTTCTGCTAAAAATTAATGCTAAGCTTGGTGGATTAAATTCCTTGTTGGCTGTTGAGTTTTCTCCTTCCATTCCTGTGGTTTCCAAGGCTCCTACCATCATCCTAGGGATGGATGTGTCGCATGGCTCTCCTGGCCAGTCGGACATACCATCAATAGCCGCGGTAGTCAGCTCGAGGCAGTGGCCACTCATTTCCCGCTATAGGGCATCTGTTCGAACTCAGTCTCCAAAGGTCGAAATGATTGATTCACTGTTCAAGCGTGTTTCTGATACAGAAGATGAAGGCATTATGAGAGAGCTGCTTTTGGACTTCTATACAAGTTCAAATAAGCGTAAACCGGATCAGATAATCATATTCAGGGATGGTGTCAGCGAGTCTCAATTCAACCAAGTCTTGAACATTGAACTGGATCAAATCATTGAGGCGTGCAAGTTCCTTGACGAGAGTTGGTGCCCAAAATTTGTGGTGATTATCGCTCAGAAAAACCACCATACAAAATTCTTTCAGCCTCAGTCACCTGATAATGTTCCACCTGGTACCATTATTGACAACAGAATTTGTCATCCAAAGAACAATGATTTTTATCTCTGTGCACAGGCCGGAATGATAGTGAGTATCAAAAATTGTGCTTTGTTTATGGCTCTATTTTTATTTTTTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003682 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005719 GO:0005730 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0008150 GO:0008152 GO:0008213 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0009814 GO:0009816 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0015030 GO:0016032 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016604 GO:0016787 GO:0016788 GO:0018022 GO:0018193 GO:0018205 GO:0019048 GO:0019219 GO:0019222 GO:0019538 GO:0030422 GO:0031047 GO:0031048 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0034641 GO:0034968 GO:0035194 GO:0035197 GO:0035198 GO:0035821 GO:0036211 GO:0040029 GO:0042221 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0043412 GO:0043414 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044728 GO:0045087 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051567 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0060255 GO:0061647 GO:0061980 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0070919 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0098542 GO:0140098 GO:1901360 GO:1901363 GO:1901564 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

974

Amino Acids

109.05

Weight (kDa)

9.52

Isoelectric Point (pI)

46.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ArgoN PF16486 200 - 362 1e-29 N-terminal domain of argonaute
ArgoL1 PF08699 374 - 423 1.4e-18 Argonaute linker 1 domain
PAZ PF02170 428 - 557 6.5e-31 PAZ domain
ArgoL2 PF16488 567 - 612 1.1e-12 Argonaute linker 2 domain
Piwi PF02171 710 - 961 9.9e-77 Piwi domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 2798
AccB1I GGYRCC 2 cut(s) 2712, 2798
AccI GTMKAC 1 cut(s) 1634
AccII CGCG 2 cut(s) 1032, 2423
AccIII TCCGGA 1 cut(s) 2146
AciI CCGC 9 cut(s) 162, 322, 1032, 1873, 1944, 2185, 2421, 2423, 2458
AclI AACGTT 1 cut(s) 968
AclWI GGATC 5 cut(s) 406, 1139, 1310, 2610, 2679
AcoI YGGCCR 3 cut(s) 121, 2395, 2444
AcsI RAATTY 9 cut(s) 845, 999, 1360, 1879, 2158, 2299, 2720, 2759, 2817
AcuI CTGAAG 2 cut(s) 1192, 1376
AcyI GRCGYC 2 cut(s) 252, 949
AdeI CACNNNGTG 2 cut(s) 1952, 2220
AfaI GTAC 1 cut(s) 2800
AfiI CCNNNNNNNGG 7 cut(s) 710, 1868, 1869, 2068, 2371, 2463, 2464
AjiI CACGTC 1 cut(s) 2057
AjnI CCWGG 9 cut(s) 312, 952, 1116, 1218, 1270, 2113, 2234, 2392, 2794
AleI CACNNNNGTG 1 cut(s) 1799
AloI GAACNNNNNNTCC 4 cut(s) 1161, 1193, 2470, 2502
AluBI AGCT 9 cut(s) 38, 183, 987, 1206, 1606, 2228, 2287, 2433, 2560
AluI AGCT 9 cut(s) 38, 183, 987, 1206, 1606, 2228, 2287, 2433, 2560
Alw21I GWGCWC 2 cut(s) 514, 2857
Alw26I GTCTC 6 cut(s) 109, 197, 812, 2055, 2490, 2643
Alw44I GTGCAC 1 cut(s) 2853
AlwI GGATC 5 cut(s) 406, 1139, 1310, 2610, 2679
Ama87I CYCGRG 1 cut(s) 2434
Aor13HI TCCGGA 1 cut(s) 2146
AoxI GGCC 8 cut(s) 121, 577, 1225, 1807, 2173, 2395, 2444, 2859
ApaLI GTGCAC 1 cut(s) 2853
ApeKI GCWGC 3 cut(s) 389, 992, 2560
ApoI RAATTY 9 cut(s) 845, 999, 1360, 1879, 2158, 2299, 2720, 2759, 2817
ArsI GACNNNNNNTTYG 4 cut(s) 618, 650, 2006, 2038
AseI ATTAAT 2 cut(s) 1563, 2277
Asp718I GGTACC 1 cut(s) 2798
AspA2I CCTAGG 1 cut(s) 2365
AspLEI GCGC 1 cut(s) 558
AspS9I GGNCC 2 cut(s) 1274, 2174
AsuHPI GGTGA 4 cut(s) 920, 1760, 2740, 2769
AsuII TTCGAA 1 cut(s) 2476
AvaI CYCGRG 1 cut(s) 2434
AvaII GGWCC 1 cut(s) 1274
AvrII CCTAGG 1 cut(s) 2365
BaeGI GKGCMC 3 cut(s) 2062, 2717, 2857
BalI TGGCCA 2 cut(s) 2397, 2446
BanI GGYRCC 2 cut(s) 2712, 2798
BanII GRGCYC 2 cut(s) 378, 1382
BauI CACGAG 2 cut(s) 84, 1898
Bbv12I GWGCWC 2 cut(s) 514, 2857
BbvI GCAGC 3 cut(s) 401, 979, 2547
BceAI ACGGC 5 cut(s) 136, 349, 727, 962, 1794
BcgI CGANNNNNNTGC 2 cut(s) 368, 402
BciT130I CCWGG 9 cut(s) 314, 954, 1118, 1220, 1272, 2115, 2236, 2394, 2796
BciVI GTATCC 1 cut(s) 859
BcoDI GTCTC 6 cut(s) 109, 197, 812, 2055, 2490, 2643
BfaI CTAG 5 cut(s) 35, 303, 570, 1181, 2366
BfmI CTRYAG 1 cut(s) 2461
BfuI GTATCC 1 cut(s) 859
BglII AGATCT 1 cut(s) 1661
BisI GCNGC 4 cut(s) 390, 993, 2421, 2561
BlnI CCTAGG 1 cut(s) 2365
BlpI GCTNAGC 1 cut(s) 2283
BlsI GCNGC 4 cut(s) 391, 994, 2422, 2562
Bme1390I CCNGG 9 cut(s) 314, 954, 1118, 1220, 1272, 2115, 2236, 2394, 2796
Bme18I GGWCC 1 cut(s) 1274
BmeT110I CYCGRG 1 cut(s) 2434
BmgBI CACGTC 1 cut(s) 2057
BmgT120I GGNCC 2 cut(s) 1274, 2174
BmiI GGNNCC 3 cut(s) 2352, 2714, 2800
BmrFI CCNGG 9 cut(s) 314, 954, 1118, 1220, 1272, 2115, 2236, 2394, 2796
BmrI ACTGGG 1 cut(s) 202
BmsI GCATC 5 cut(s) 42, 1012, 1100, 1106, 2477
BmuI ACTGGG 1 cut(s) 202
BpmI CTGGAG 1 cut(s) 881
Bpu1102I GCTNAGC 1 cut(s) 2283
Bpu14I TTCGAA 1 cut(s) 2476
BpuEI CTTGAG 4 cut(s) 498, 1468, 1622, 1782
BsaAI YACGTR 2 cut(s) 687, 1763
BsaBI GATNNNNATC 1 cut(s) 2844
BsaHI GRCGYC 2 cut(s) 252, 949
BsaI GGTCTC 1 cut(s) 197
BsaJI CCNNGG 9 cut(s) 313, 580, 1218, 1219, 2177, 2235, 2346, 2365, 2421
BsaWI WCCGGW 3 cut(s) 137, 2146, 2599
BsaXI ACNNNNNCTCC 6 cut(s) 259, 289, 1161, 1191, 2470, 2500
Bsc4I CCNNNNNNNGG 7 cut(s) 710, 1868, 1869, 2068, 2371, 2463, 2464
Bse1I ACTGG 7 cut(s) 208, 1277, 1337, 1411, 1674, 2398, 2673
Bse3DI GCAATG 3 cut(s) 461, 503, 1849
Bse8I GATNNNNATC 1 cut(s) 2844
BseAI TCCGGA 1 cut(s) 2146
BseBI CCWGG 9 cut(s) 314, 954, 1118, 1220, 1272, 2115, 2236, 2394, 2796
BseDI CCNNGG 9 cut(s) 313, 580, 1218, 1219, 2177, 2235, 2346, 2365, 2421
BseJI GATNNNNATC 1 cut(s) 2844
BseLI CCNNNNNNNGG 7 cut(s) 710, 1868, 1869, 2068, 2371, 2463, 2464
BseMI GCAATG 3 cut(s) 461, 503, 1849
BseMII CTCAG 6 cut(s) 756, 1055, 2190, 2495, 2753, 2786
BseNI ACTGG 7 cut(s) 208, 1277, 1337, 1411, 1674, 2398, 2673
BseRI GAGGAG 2 cut(s) 594, 1185
BseSI GKGCMC 3 cut(s) 2062, 2717, 2857
BseXI GCAGC 3 cut(s) 401, 979, 2547
BsgI GTGCAG 1 cut(s) 1207
Bsh1236I CGCG 2 cut(s) 1032, 2423
Bsh1285I CGRYCG 1 cut(s) 231
BshFI GGCC 8 cut(s) 123, 579, 1227, 1809, 2175, 2397, 2446, 2861
BshNI GGYRCC 2 cut(s) 2712, 2798
BsiEI CGRYCG 1 cut(s) 231
BsiHKAI GWGCWC 2 cut(s) 514, 2857
BsiHKCI CYCGRG 1 cut(s) 2434
BsiSI CCGG 4 cut(s) 138, 2147, 2600, 2862
BslFI GGGAC 1 cut(s) 687
BslI CCNNNNNNNGG 7 cut(s) 710, 1868, 1869, 2068, 2371, 2463, 2464
BsmAI GTCTC 6 cut(s) 109, 197, 812, 2055, 2490, 2643
BsmFI GGGAC 1 cut(s) 687
BsnI GGCC 8 cut(s) 123, 579, 1227, 1809, 2175, 2397, 2446, 2861
Bso31I GGTCTC 1 cut(s) 197
BsoBI CYCGRG 1 cut(s) 2434
Bsp119I TTCGAA 1 cut(s) 2476
Bsp1286I GDGCHC 6 cut(s) 378, 514, 1382, 2062, 2717, 2857
Bsp13I TCCGGA 1 cut(s) 2146
Bsp1720I GCTNAGC 1 cut(s) 2283
Bsp19I CCATGG 1 cut(s) 2177
BspACI CCGC 9 cut(s) 162, 322, 1032, 1873, 1944, 2185, 2421, 2423, 2458
BspANI GGCC 8 cut(s) 123, 579, 1227, 1809, 2175, 2397, 2446, 2861
BspCNI CTCAG 6 cut(s) 757, 1056, 2191, 2494, 2752, 2785
BspEI TCCGGA 1 cut(s) 2146
BspFNI CGCG 2 cut(s) 1032, 2423
BspLI GGNNCC 3 cut(s) 2352, 2714, 2800
BspPI GGATC 5 cut(s) 406, 1139, 1310, 2610, 2679
BspT104I TTCGAA 1 cut(s) 2476
BspT107I GGYRCC 2 cut(s) 2712, 2798
BspTNI GGTCTC 1 cut(s) 197
BsrDI GCAATG 3 cut(s) 461, 503, 1849
BsrI ACTGG 7 cut(s) 208, 1277, 1337, 1411, 1674, 2398, 2673
BssECI CCNNGG 9 cut(s) 313, 580, 1218, 1219, 2177, 2235, 2346, 2365, 2421
BssNAI GTATAC 1 cut(s) 1635
BssNI GRCGYC 2 cut(s) 252, 949
BssSI CACGAG 2 cut(s) 84, 1898
BssT1I CCWWGG 4 cut(s) 580, 2177, 2346, 2365
Bst1107I GTATAC 1 cut(s) 1635
Bst2BI CACGAG 2 cut(s) 84, 1898
Bst2UI CCWGG 9 cut(s) 314, 954, 1118, 1220, 1272, 2115, 2236, 2394, 2796
Bst4CI ACNGT 9 cut(s) 94, 817, 1498, 1533, 1632, 2049, 2127, 2220, 2514
Bst6I CTCTTC 5 cut(s) 164, 797, 932, 1659, 2031
BstACI GRCGYC 2 cut(s) 252, 949
BstBAI YACGTR 2 cut(s) 687, 1763
BstBI TTCGAA 1 cut(s) 2476
BstC8I GCNNGC 5 cut(s) 510, 1418, 1821, 1948, 2689
BstDSI CCRYGG 2 cut(s) 2177, 2421
BstFNI CGCG 2 cut(s) 1032, 2423
BstHHI GCGC 1 cut(s) 558
BstMAI GTCTC 6 cut(s) 109, 197, 812, 2055, 2490, 2643
BstMCI CGRYCG 1 cut(s) 231
BstMWI GCNNNNNNNGC 3 cut(s) 129, 356, 2394
BstNI CCWGG 9 cut(s) 314, 954, 1118, 1220, 1272, 2115, 2236, 2394, 2796
BstNSI RCATGY 3 cut(s) 461, 1097, 1770
BstSCI CCNGG 9 cut(s) 312, 952, 1116, 1218, 1270, 2113, 2234, 2392, 2794
BstSFI CTRYAG 1 cut(s) 2461
BstSLI GKGCMC 3 cut(s) 2062, 2717, 2857
BstSNI TACGTA 1 cut(s) 687
BstUI CGCG 2 cut(s) 1032, 2423
BstV1I GCAGC 3 cut(s) 401, 979, 2547
BstX2I RGATCY 2 cut(s) 1315, 1661
BstXI CCANNNNNNTGG 1 cut(s) 2338
BstYI RGATCY 2 cut(s) 1315, 1661
BstZ17I GTATAC 1 cut(s) 1635
BsuI GTATCC 1 cut(s) 859
BsuRI GGCC 8 cut(s) 123, 579, 1227, 1809, 2175, 2397, 2446, 2861
BtgI CCRYGG 2 cut(s) 2177, 2421
BtgZI GCGATG 1 cut(s) 1505
BtrI CACGTC 1 cut(s) 2057
BtsI GCAGTG 1 cut(s) 2447
BtsIMutI CAGTG 4 cut(s) 1667, 2225, 2447, 2510
Cac8I GCNNGC 5 cut(s) 510, 1418, 1821, 1948, 2689
CfoI GCGC 1 cut(s) 558
Cfr13I GGNCC 2 cut(s) 1274, 2174
Cfr42I CCGCGG 1 cut(s) 2424
CseI GACGC 3 cut(s) 260, 938, 1571
CsiI ACCWGGT 1 cut(s) 2794
Csp6I GTAC 1 cut(s) 2799
CspCI CAANNNNNGTGG 2 cut(s) 2706, 2741
CviAII CATG 9 cut(s) 101, 458, 1006, 1094, 1258, 1425, 1767, 2178, 2384
CviQI GTAC 1 cut(s) 2799
DraI TTTAAA 2 cut(s) 540, 2920
DraIII CACNNNGTG 2 cut(s) 1952, 2220
EaeI YGGCCR 3 cut(s) 121, 2395, 2444
Eam1104I CTCTTC 5 cut(s) 164, 797, 932, 1659, 2031
EarI CTCTTC 5 cut(s) 164, 797, 932, 1659, 2031
Eco105I TACGTA 1 cut(s) 687
Eco130I CCWWGG 4 cut(s) 580, 2177, 2346, 2365
Eco147I AGGCCT 1 cut(s) 579
Eco24I GRGCYC 2 cut(s) 378, 1382
Eco31I GGTCTC 1 cut(s) 197
Eco32I GATATC 1 cut(s) 1078
Eco47I GGWCC 1 cut(s) 1274
Eco57I CTGAAG 2 cut(s) 1192, 1376
Eco88I CYCGRG 1 cut(s) 2434
EcoRII CCWGG 9 cut(s) 312, 952, 1116, 1218, 1270, 2113, 2234, 2392, 2794
EcoRV GATATC 1 cut(s) 1078
EcoT14I CCWWGG 4 cut(s) 580, 2177, 2346, 2365
EcoT22I ATGCAT 2 cut(s) 463, 1099
EcoT38I GRGCYC 2 cut(s) 378, 1382
ErhI CCWWGG 4 cut(s) 580, 2177, 2346, 2365
FaeI CATG 9 cut(s) 104, 461, 1009, 1097, 1261, 1428, 1770, 2181, 2387
FalI AAGNNNNNCTT 2 cut(s) 794, 826
FaqI GGGAC 1 cut(s) 687
FatI CATG 9 cut(s) 100, 457, 1005, 1093, 1257, 1424, 1766, 2177, 2383
FauI CCCGC 1 cut(s) 2465
FblI GTMKAC 1 cut(s) 1634
Fnu4HI GCNGC 4 cut(s) 390, 993, 2421, 2561
FriOI GRGCYC 2 cut(s) 378, 1382
Fsp4HI GCNGC 4 cut(s) 390, 993, 2421, 2561
FspBI CTAG 5 cut(s) 35, 303, 570, 1181, 2366
GlaI GCGC 1 cut(s) 557
GluI GCNGC 4 cut(s) 390, 993, 2421, 2561
GsuI CTGGAG 1 cut(s) 881
HaeIII GGCC 8 cut(s) 123, 579, 1227, 1809, 2175, 2397, 2446, 2861
HapII CCGG 4 cut(s) 138, 2147, 2600, 2862
HgaI GACGC 3 cut(s) 260, 938, 1571
HhaI GCGC 1 cut(s) 558
Hin1I GRCGYC 2 cut(s) 252, 949
Hin1II CATG 9 cut(s) 104, 461, 1009, 1097, 1261, 1428, 1770, 2181, 2387
Hin6I GCGC 1 cut(s) 556
HinP1I GCGC 1 cut(s) 556
HincII GTYRAC 3 cut(s) 250, 631, 1936
HindII GTYRAC 3 cut(s) 250, 631, 1936
HindIII AAGCTT 3 cut(s) 181, 1204, 2285
HpaI GTTAAC 2 cut(s) 631, 1936
HpaII CCGG 4 cut(s) 138, 2147, 2600, 2862
HphI GGTGA 4 cut(s) 920, 1760, 2740, 2769
Hpy188III TCNNGA 9 cut(s) 108, 530, 860, 1037, 1391, 1900, 2052, 2147, 2656
Hpy99I CGWCG 1 cut(s) 2058
HpyAV CCTTC 7 cut(s) 723, 772, 1003, 1799, 1993, 2337, 2537
HpyCH4III ACNGT 9 cut(s) 94, 817, 1498, 1533, 1632, 2049, 2127, 2220, 2514
HpyCH4IV ACGT 6 cut(s) 298, 633, 686, 968, 1762, 2056
HpyF10VI GCNNNNNNNGC 3 cut(s) 129, 356, 2394
HpySE526I ACGT 6 cut(s) 298, 633, 686, 968, 1762, 2056
Hsp92I GRCGYC 2 cut(s) 252, 949
Hsp92II CATG 9 cut(s) 104, 461, 1009, 1097, 1261, 1428, 1770, 2181, 2387
HspAI GCGC 1 cut(s) 556
Kpn2I TCCGGA 1 cut(s) 2146
KpnI GGTACC 1 cut(s) 2802
KspAI GTTAAC 2 cut(s) 631, 1936
KspI CCGCGG 1 cut(s) 2424
LmnI GCTCC 3 cut(s) 1828, 2233, 2356
Lsp1109I GCAGC 3 cut(s) 401, 979, 2547
LweI GCATC 5 cut(s) 42, 1012, 1100, 1106, 2477
MabI ACCWGGT 1 cut(s) 2794
MaeI CTAG 5 cut(s) 35, 303, 570, 1181, 2366
MaeII ACGT 6 cut(s) 298, 633, 686, 968, 1762, 2056
MaeIII GTNAC 6 cut(s) 88, 634, 682, 1492, 2212, 2775
MfeI CAATTG 3 cut(s) 564, 1014, 1779
MflI RGATCY 2 cut(s) 1315, 1661
MhlI GDGCHC 6 cut(s) 378, 514, 1382, 2062, 2717, 2857
MlsI TGGCCA 2 cut(s) 2397, 2446
MluNI TGGCCA 2 cut(s) 2397, 2446
MlyI GAGTC 6 cut(s) 595, 753, 814, 925, 1049, 2645
MmeI TCCRAC 4 cut(s) 1147, 1323, 1549, 2382
Mox20I TGGCCA 2 cut(s) 2397, 2446
Mph1103I ATGCAT 2 cut(s) 463, 1099
MroI TCCGGA 1 cut(s) 2146
MscI TGGCCA 2 cut(s) 2397, 2446
MslI CAYNNNNRTG 3 cut(s) 672, 1799, 2336
Msp20I TGGCCA 2 cut(s) 2397, 2446
MspA1I CMGCKG 1 cut(s) 2423
MspI CCGG 4 cut(s) 138, 2147, 2600, 2862
MspR9I CCNGG 9 cut(s) 314, 954, 1118, 1220, 1272, 2115, 2236, 2394, 2796
MunI CAATTG 3 cut(s) 564, 1014, 1779
MvaI CCWGG 9 cut(s) 314, 954, 1118, 1220, 1272, 2115, 2236, 2394, 2796
MvnI CGCG 2 cut(s) 1032, 2423
MwoI GCNNNNNNNGC 3 cut(s) 129, 356, 2394
NcoI CCATGG 1 cut(s) 2177
NlaIII CATG 9 cut(s) 104, 461, 1009, 1097, 1261, 1428, 1770, 2181, 2387
NlaIV GGNNCC 3 cut(s) 2352, 2714, 2800
NmuCI GTSAC 4 cut(s) 634, 1492, 2212, 2775
NsiI ATGCAT 2 cut(s) 463, 1099
NspI RCATGY 3 cut(s) 461, 1097, 1770
NspV TTCGAA 1 cut(s) 2476
OliI CACNNNNGTG 1 cut(s) 1799
PaeR7I CTCGAG 1 cut(s) 2434
PasI CCCWGGG 1 cut(s) 1219
PceI AGGCCT 1 cut(s) 579
PfeI GAWTC 6 cut(s) 154, 365, 1194, 2041, 2191, 2507
PflFI GACNNNGTC 1 cut(s) 743
PfoI TCCNGGA 1 cut(s) 2113
PkrI GCNGC 4 cut(s) 391, 994, 2422, 2562
PleI GAGTC 6 cut(s) 595, 752, 813, 924, 1048, 2644
PpsI GAGTC 6 cut(s) 595, 752, 813, 924, 1048, 2644
Ppu21I YACGTR 2 cut(s) 687, 1763
PshBI ATTAAT 2 cut(s) 1563, 2277
Psp1406I AACGTT 1 cut(s) 968
Psp6I CCWGG 9 cut(s) 312, 952, 1116, 1218, 1270, 2113, 2234, 2392, 2794
PspGI CCWGG 9 cut(s) 312, 952, 1116, 1218, 1270, 2113, 2234, 2392, 2794
PspN4I GGNNCC 3 cut(s) 2352, 2714, 2800
PspPI GGNCC 2 cut(s) 1274, 2174
PspXI VCTCGAGB 1 cut(s) 2434
PsrI GAACNNNNNNTAC 4 cut(s) 13, 45, 1743, 1775
PsuI RGATCY 2 cut(s) 1315, 1661
PsyI GACNNNGTC 1 cut(s) 743
RsaI GTAC 1 cut(s) 2800
RsaNI GTAC 1 cut(s) 2799
RseI CAYNNNNRTG 3 cut(s) 672, 1799, 2336
SacII CCGCGG 1 cut(s) 2424
SatI GCNGC 4 cut(s) 390, 993, 2421, 2561
Sau96I GGNCC 2 cut(s) 1274, 2174
SchI GAGTC 6 cut(s) 595, 753, 814, 925, 1049, 2645
ScrFI CCNGG 9 cut(s) 314, 954, 1118, 1220, 1272, 2115, 2236, 2394, 2796
SduI GDGCHC 6 cut(s) 378, 514, 1382, 2062, 2717, 2857
SexAI ACCWGGT 1 cut(s) 2794
SfaNI GCATC 5 cut(s) 42, 1012, 1100, 1106, 2477
SfcI CTRYAG 1 cut(s) 2461
Sfr274I CTCGAG 1 cut(s) 2434
Sfr303I CCGCGG 1 cut(s) 2424
SfuI TTCGAA 1 cut(s) 2476
SgrBI CCGCGG 1 cut(s) 2424
SinI GGWCC 1 cut(s) 1274
SlaI CTCGAG 1 cut(s) 2434
SmiMI CAYNNNNRTG 3 cut(s) 672, 1799, 2336
SmlI CTYRAG 5 cut(s) 513, 1447, 1601, 1797, 2434
SmoI CTYRAG 5 cut(s) 513, 1447, 1601, 1797, 2434
SnaBI TACGTA 1 cut(s) 687
SseBI AGGCCT 1 cut(s) 579
SsiI CCGC 9 cut(s) 162, 322, 1032, 1873, 1944, 2185, 2421, 2423, 2458
SspMI CTAG 5 cut(s) 35, 303, 570, 1181, 2366
StuI AGGCCT 1 cut(s) 579
StyD4I CCNGG 9 cut(s) 312, 952, 1116, 1218, 1270, 2113, 2234, 2392, 2794
StyI CCWWGG 4 cut(s) 580, 2177, 2346, 2365
TaaI ACNGT 9 cut(s) 94, 817, 1498, 1533, 1632, 2049, 2127, 2220, 2514
TaiI ACGT 6 cut(s) 301, 636, 689, 971, 1765, 2059
TaqI TCGA 6 cut(s) 116, 157, 2053, 2435, 2476, 2496
TaqII GACCGA 1 cut(s) 217
TauI GCSGC 1 cut(s) 2423
TfiI GAWTC 6 cut(s) 154, 365, 1194, 2041, 2191, 2507
TscAI CASTG 4 cut(s) 1674, 2225, 2447, 2517
TseFI GTSAC 4 cut(s) 634, 1492, 2212, 2775
TseI GCWGC 3 cut(s) 389, 992, 2560
Tsp45I GTSAC 4 cut(s) 634, 1492, 2212, 2775
TspDTI ATGAA 8 cut(s) 162, 357, 705, 939, 1022, 2012, 2119, 2556
TspGWI ACGGA 3 cut(s) 438, 670, 1961
TspRI CASTG 4 cut(s) 1674, 2225, 2447, 2517
Tth111I GACNNNGTC 1 cut(s) 743
VneI GTGCAC 1 cut(s) 2853
VpaK11BI GGWCC 1 cut(s) 1274
VspI ATTAAT 2 cut(s) 1563, 2277
XapI RAATTY 9 cut(s) 845, 999, 1360, 1879, 2158, 2299, 2720, 2759, 2817
XceI RCATGY 3 cut(s) 461, 1097, 1770
XcmI CCANNNNNNNNNTGG 1 cut(s) 229
XhoI CTCGAG 1 cut(s) 2434
XmaJI CCTAGG 1 cut(s) 2365
XmiI GTMKAC 1 cut(s) 1634
XspI CTAG 5 cut(s) 35, 303, 570, 1181, 2366
Zsp2I ATGCAT 2 cut(s) 463, 1099
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.