Rorug05G0309500

Encodes a close homolog of the Cauliflower OR (Orange) protein. The function of OR is to induce the differentiation of proplastids or other noncolored plastids into chromoplasts for carotenoid accumulation. Both proteins contain a Cysteine-rich

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
36203342 .. 36210117
6776 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0309500.1

Sequence Viewer

Length: 1482 bp
ATGGAGTCGGCGAGCATACTCCGATATCTGGAGGGCAAGACCATCTTAGTTACCGGAGGTACCGGCTTCCTTGGAATGGTGTTTCTGGAGAAAATACTCAGAGTTCAACCAGATGTGAAAAAGATCTACCTCCTTTTAAGATCCTCCGACGCCAAGTCAGCCACAAAGCGCATGAACAATGAGATCATAGGGAAGGAGTTGTTCAGAGTTTTGAGGGAGAAATGCGGCGCAGATTTTGAATCCTTCATTTCAGAAAAAGTTGTTGCTTTGCCAGGAGACGTCTCTTCTGAAAACCTCGGAATCAAAGAATTGAAACAGAGGGAGCAAATGTGCAGTGAAATAGAAATCGTATTTAACTGTGCAGCCACCACAAACTTTGACGAAAGGTATGATATCGCCCTGGACGTCAACACATTTGGAGTGCTGCATGCGATGAACTTTGCAAAGAAATGCTTAAAACTAGAGATGTTTCTCCACGTATCAACTGCTTATGTATGTGGCGAGAGGGGTGGACACTTACTGGAAGACTCATCTTCGATGGATGAAATGGTGAAGGAGATGACTAAATTTGATTTTGAAGCAGTGGAAAAGAAACTGGTGAAGGAGAAATTGAATGAACTAAAAGCACAAGATGCTTCACAAGAAGTTATTACAAACACAATGAAGGATTTCGGCATTGAAAGGGCTAAAGTGTATGGATGGCCAAACACTTATGTATTTACGAAAGCGATGGGAGAAATATTTCTCGGACGCTTAAAAGAAAATCTACCTCTTGTCATTATACGTCCAACAGTGGTTACTAGTACTTACAAGGAACCATTTCCAGGTTGGATTCAAGGATTCAGAACCATTGATAGCGTAATTGCTAGTTATTATAAAGGGAAGCTCCCATGCTTACTCGTCGATCCGATGATAGTATTTGATATGATTCCGGTGGACATGGTGGTGAATTCGATAATTGCAGCAATGGCAGTGAATGCAAATAAATATTCTGGCATCATATATCATGTAGGAACCTCACTGAGAAATCCTATAAAATTTTGTGATATTTATGATATCGTGTTCAAATACTGCACTGAGAATCCATGGATTAACAAGGATGGAACCATTGTTAAGGCTGGCAAGTTTACAATGTTCAGGACTATGGCTAGCTTTCACATGTACATGCAAATTCGCTACATGCTACCTTTGCAGGGATTAAGGTTGGTGAATATGACATTTGGCCAATATTTTCAAGAATTGTATGTGAACTATGATCGTAAACTCAGATTGGTGATGCGCTTGGTAGAGCTATACAAACCTTACATGTTTTTCAAGGGCATTTTTGACGACACCAATTCAGAGGAATTACAAAGGATAACAATTGAGAGTTACAAAGATGCAGAAATGTTCAAGTTTGATCCCAAATGCATTGATTGGGAAGACTACATTTCGAAAACTCATGTTCCTGGCCTTCGAAAACATGTTATGCTCAACAAATAA

Protein Analysis

493

Amino Acids

56.81

Weight (kDa)

8.17

Isoelectric Point (pI)

32.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAD_binding_4 PF07993 17 - 319 1.1e-75 Male sterility protein
Sterile PF03015 393 - 490 1.4e-16 Male sterility protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 876
AatII GACGTC 2 cut(s) 282, 408
Acc65I GGTACC 1 cut(s) 59
AccB1I GGYRCC 1 cut(s) 59
AciI CCGC 1 cut(s) 225
AclWI GGATC 3 cut(s) 135, 899, 1394
AcoI YGGCCR 2 cut(s) 701, 1222
AcsI RAATTY 4 cut(s) 566, 949, 1037, 1170
AcyI GRCGYC 3 cut(s) 150, 279, 405
AfaI GTAC 3 cut(s) 61, 805, 1163
AfiI CCNNNNNNNGG 4 cut(s) 28, 76, 824, 1193
AflIII ACRYGT 3 cut(s) 1158, 1305, 1462
AhdI GACNNNNNGTC 1 cut(s) 154
AhlI ACTAGT 1 cut(s) 800
AjnI CCWGG 4 cut(s) 271, 399, 823, 1447
AluBI AGCT 3 cut(s) 886, 1152, 1291
AluI AGCT 3 cut(s) 886, 1152, 1291
Alw26I GTCTC 2 cut(s) 270, 286
AlwI GGATC 3 cut(s) 135, 899, 1394
AoxI GGCC 3 cut(s) 701, 1222, 1450
ApeKI GCWGC 3 cut(s) 362, 424, 962
ApoI RAATTY 4 cut(s) 566, 949, 1037, 1170
Asp700I GAANNNNTTC 3 cut(s) 668, 741, 819
Asp718I GGTACC 1 cut(s) 59
AspLEI GCGC 3 cut(s) 171, 230, 1281
AsuHPI GGTGA 5 cut(s) 562, 610, 958, 1219, 1285
AsuII TTCGAA 2 cut(s) 1433, 1456
AsuNHI GCTAGC 1 cut(s) 1148
BalI TGGCCA 2 cut(s) 703, 1224
BanI GGYRCC 1 cut(s) 59
BbsI GAAGAC 2 cut(s) 531, 1428
BbvI GCAGC 3 cut(s) 374, 411, 974
BccI CCATC 5 cut(s) 50, 532, 693, 724, 1094
BciT130I CCWGG 4 cut(s) 273, 401, 825, 1449
BcoDI GTCTC 2 cut(s) 270, 286
BcuI ACTAGT 1 cut(s) 800
BfaI CTAG 4 cut(s) 461, 801, 867, 1149
BglII AGATCT 1 cut(s) 123
BisI GCNGC 4 cut(s) 226, 363, 425, 963
BlsI GCNGC 4 cut(s) 227, 364, 426, 964
BmcAI AGTACT 1 cut(s) 805
Bme1390I CCNGG 4 cut(s) 273, 401, 825, 1449
BmeRI GACNNNNNGTC 1 cut(s) 154
BmiI GGNNCC 4 cut(s) 61, 816, 1015, 1105
BmrFI CCNGG 4 cut(s) 273, 401, 825, 1449
BmsI GCATC 4 cut(s) 622, 1005, 1266, 1369
BmtI GCTAGC 1 cut(s) 1152
BpiI GAAGAC 2 cut(s) 531, 1428
BpmI CTGGAG 2 cut(s) 50, 107
Bpu14I TTCGAA 2 cut(s) 1433, 1456
BsaAI YACGTR 1 cut(s) 478
BsaHI GRCGYC 3 cut(s) 150, 279, 405
BsaJI CCNNGG 4 cut(s) 70, 295, 399, 1085
BsaWI WCCGGW 2 cut(s) 53, 931
BsaXI ACNNNNNCTCC 2 cut(s) 314, 344
Bsc4I CCNNNNNNNGG 4 cut(s) 28, 76, 824, 1193
Bse118I RCCGGY 1 cut(s) 62
Bse1I ACTGG 2 cut(s) 525, 600
Bse3DI GCAATG 1 cut(s) 972
BseBI CCWGG 4 cut(s) 273, 401, 825, 1449
BseDI CCNNGG 4 cut(s) 70, 295, 399, 1085
BseGI GGATG 3 cut(s) 547, 704, 1105
BseLI CCNNNNNNNGG 4 cut(s) 28, 76, 824, 1193
BseMI GCAATG 1 cut(s) 972
BseMII CTCAG 4 cut(s) 112, 1013, 1068, 1279
BseNI ACTGG 2 cut(s) 525, 600
BseXI GCAGC 3 cut(s) 374, 411, 974
BsgI GTGCAG 3 cut(s) 352, 381, 1057
BshFI GGCC 3 cut(s) 703, 1224, 1452
BshNI GGYRCC 1 cut(s) 59
BsiSI CCGG 3 cut(s) 54, 63, 932
BslI CCNNNNNNNGG 4 cut(s) 28, 76, 824, 1193
BsmAI GTCTC 2 cut(s) 270, 286
BsmBI CGTCTC 2 cut(s) 270, 286
BsmI GAATGC 1 cut(s) 982
BsnI GGCC 3 cut(s) 703, 1224, 1452
Bsp119I TTCGAA 2 cut(s) 1433, 1456
Bsp1407I TGTACA 1 cut(s) 1161
Bsp143I GATC 6 cut(s) 123, 140, 183, 904, 1255, 1399
Bsp19I CCATGG 1 cut(s) 1085
BspACI CCGC 1 cut(s) 225
BspANI GGCC 3 cut(s) 703, 1224, 1452
BspCNI CTCAG 4 cut(s) 111, 1014, 1069, 1278
BspLI GGNNCC 4 cut(s) 61, 816, 1015, 1105
BspOI GCTAGC 1 cut(s) 1152
BspPI GGATC 3 cut(s) 135, 899, 1394
BspT104I TTCGAA 2 cut(s) 1433, 1456
BspT107I GGYRCC 1 cut(s) 59
BsrDI GCAATG 1 cut(s) 972
BsrFI RCCGGY 1 cut(s) 62
BsrGI TGTACA 1 cut(s) 1161
BsrI ACTGG 2 cut(s) 525, 600
BssAI RCCGGY 1 cut(s) 62
BssECI CCNNGG 4 cut(s) 70, 295, 399, 1085
BssMI GATC 6 cut(s) 123, 140, 183, 904, 1255, 1399
BssNI GRCGYC 3 cut(s) 150, 279, 405
BssT1I CCWWGG 2 cut(s) 70, 1085
Bst2UI CCWGG 4 cut(s) 273, 401, 825, 1449
Bst4CI ACNGT 2 cut(s) 359, 793
Bst6I CTCTTC 1 cut(s) 289
BstACI GRCGYC 3 cut(s) 150, 279, 405
BstAPI GCANNNNNTGC 2 cut(s) 632, 977
BstAUI TGTACA 1 cut(s) 1161
BstBAI YACGTR 1 cut(s) 478
BstBI TTCGAA 2 cut(s) 1433, 1456
BstC8I GCNNGC 4 cut(s) 13, 429, 1120, 1150
BstDEI CTNAG 5 cut(s) 46, 98, 1022, 1077, 1265
BstDSI CCRYGG 1 cut(s) 1085
BstF5I GGATG 3 cut(s) 547, 704, 1105
BstHHI GCGC 3 cut(s) 171, 230, 1281
BstKTI GATC 6 cut(s) 126, 143, 186, 907, 1258, 1402
BstMAI GTCTC 2 cut(s) 270, 286
BstMBI GATC 6 cut(s) 123, 140, 183, 904, 1255, 1399
BstMWI GCNNNNNNNGC 5 cut(s) 158, 632, 968, 977, 1189
BstNI CCWGG 4 cut(s) 273, 401, 825, 1449
BstNSI RCATGY 6 cut(s) 431, 1162, 1168, 1183, 1309, 1466
BstSCI CCNGG 4 cut(s) 271, 399, 823, 1447
BstV1I GCAGC 3 cut(s) 374, 411, 974
BstV2I GAAGAC 2 cut(s) 531, 1428
BstX2I RGATCY 2 cut(s) 123, 140
BstYI RGATCY 2 cut(s) 123, 140
BsuRI GGCC 3 cut(s) 703, 1224, 1452
BtgI CCRYGG 1 cut(s) 1085
BtgZI GCGATG 2 cut(s) 446, 743
BtsCI GGATG 3 cut(s) 547, 704, 1105
BtsI GCAGTG 3 cut(s) 340, 588, 978
BtsIMutI CAGTG 6 cut(s) 340, 588, 798, 978, 1019, 1074
Cac8I GCNNGC 4 cut(s) 13, 429, 1120, 1150
CfoI GCGC 3 cut(s) 171, 230, 1281
Cfr10I RCCGGY 1 cut(s) 62
CseI GACGC 2 cut(s) 158, 759
Csp6I GTAC 3 cut(s) 60, 804, 1162
CspCI CAANNNNNGTGG 2 cut(s) 358, 393
CviQI GTAC 3 cut(s) 60, 804, 1162
DdeI CTNAG 5 cut(s) 46, 98, 1022, 1077, 1265
DpnI GATC 6 cut(s) 125, 142, 185, 906, 1257, 1401
DpnII GATC 6 cut(s) 123, 140, 183, 904, 1255, 1399
DriI GACNNNNNGTC 1 cut(s) 154
EaeI YGGCCR 2 cut(s) 701, 1222
Eam1104I CTCTTC 1 cut(s) 289
Eam1105I GACNNNNNGTC 1 cut(s) 154
EarI CTCTTC 1 cut(s) 289
Eco130I CCWWGG 2 cut(s) 70, 1085
Eco32I GATATC 3 cut(s) 26, 394, 1057
EcoRI GAATTC 1 cut(s) 949
EcoRII CCWGG 4 cut(s) 271, 399, 823, 1447
EcoRV GATATC 3 cut(s) 26, 394, 1057
EcoT14I CCWWGG 2 cut(s) 70, 1085
EcoT22I ATGCAT 1 cut(s) 1412
ErhI CCWWGG 2 cut(s) 70, 1085
Esp3I CGTCTC 2 cut(s) 270, 286
FalI AAGNNNNNCTT 4 cut(s) 29, 61, 437, 469
Fnu4HI GCNGC 4 cut(s) 226, 363, 425, 963
FokI GGATG 3 cut(s) 554, 711, 1112
Fsp4HI GCNGC 4 cut(s) 226, 363, 425, 963
FspBI CTAG 4 cut(s) 461, 801, 867, 1149
GlaI GCGC 3 cut(s) 170, 229, 1280
GluI GCNGC 4 cut(s) 226, 363, 425, 963
GsuI CTGGAG 2 cut(s) 50, 107
HaeIII GGCC 3 cut(s) 703, 1224, 1452
HapII CCGG 3 cut(s) 54, 63, 932
HgaI GACGC 2 cut(s) 158, 759
HhaI GCGC 3 cut(s) 171, 230, 1281
Hin1I GRCGYC 3 cut(s) 150, 279, 405
Hin6I GCGC 3 cut(s) 169, 228, 1279
HinP1I GCGC 3 cut(s) 169, 228, 1279
HincII GTYRAC 1 cut(s) 409
HindII GTYRAC 1 cut(s) 409
HinfI GANTC 8 cut(s) 5, 239, 300, 527, 832, 840, 928, 1081
HpaII CCGG 3 cut(s) 54, 63, 932
HphI GGTGA 5 cut(s) 562, 610, 958, 1219, 1285
Hpy166II GTNNAC 6 cut(s) 409, 512, 937, 1128, 1249, 1262
Hpy188III TCNNGA 4 cut(s) 29, 86, 1138, 1235
Hpy8I GTNNAC 6 cut(s) 409, 512, 937, 1128, 1249, 1262
Hpy99I CGWCG 2 cut(s) 152, 905
HpyAV CCTTC 6 cut(s) 187, 253, 547, 595, 658, 1463
HpyCH4III ACNGT 2 cut(s) 359, 793
HpyCH4IV ACGT 4 cut(s) 279, 405, 477, 784
HpyF10VI GCNNNNNNNGC 5 cut(s) 158, 632, 968, 977, 1189
HpyF3I CTNAG 5 cut(s) 46, 98, 1022, 1077, 1265
HpySE526I ACGT 4 cut(s) 279, 405, 477, 784
Hsp92I GRCGYC 3 cut(s) 150, 279, 405
HspAI GCGC 3 cut(s) 169, 228, 1279
KpnI GGTACC 1 cut(s) 63
Kzo9I GATC 6 cut(s) 123, 140, 183, 904, 1255, 1399
LmnI GCTCC 2 cut(s) 322, 891
Lsp1109I GCAGC 3 cut(s) 374, 411, 974
LweI GCATC 4 cut(s) 622, 1005, 1266, 1369
MaeI CTAG 4 cut(s) 461, 801, 867, 1149
MaeII ACGT 4 cut(s) 279, 405, 477, 784
MaeIII GTNAC 3 cut(s) 49, 796, 1370
MalI GATC 6 cut(s) 125, 142, 185, 906, 1257, 1401
MboI GATC 6 cut(s) 123, 140, 183, 904, 1255, 1399
MboII GAAGA 4 cut(s) 276, 525, 536, 1433
MfeI CAATTG 1 cut(s) 1362
MflI RGATCY 2 cut(s) 123, 140
MlsI TGGCCA 2 cut(s) 703, 1224
MluNI TGGCCA 2 cut(s) 703, 1224
MlyI GAGTC 2 cut(s) 14, 521
MmeI TCCRAC 3 cut(s) 171, 809, 812
Mox20I TGGCCA 2 cut(s) 703, 1224
Mph1103I ATGCAT 1 cut(s) 1412
MroXI GAANNNNTTC 3 cut(s) 668, 741, 819
MscI TGGCCA 2 cut(s) 703, 1224
MseI TTAA 7 cut(s) 137, 354, 455, 755, 1092, 1113, 1199
MslI CAYNNNNRTG 2 cut(s) 944, 1163
Msp20I TGGCCA 2 cut(s) 703, 1224
MspI CCGG 3 cut(s) 54, 63, 932
MspR9I CCNGG 4 cut(s) 273, 401, 825, 1449
MunI CAATTG 1 cut(s) 1362
Mva1269I GAATGC 1 cut(s) 982
MvaI CCWGG 4 cut(s) 273, 401, 825, 1449
MwoI GCNNNNNNNGC 5 cut(s) 158, 632, 968, 977, 1189
NcoI CCATGG 1 cut(s) 1085
NdeII GATC 6 cut(s) 123, 140, 183, 904, 1255, 1399
NheI GCTAGC 1 cut(s) 1148
NlaIV GGNNCC 4 cut(s) 61, 816, 1015, 1105
NsiI ATGCAT 1 cut(s) 1412
NspI RCATGY 6 cut(s) 431, 1162, 1168, 1183, 1309, 1466
NspV TTCGAA 2 cut(s) 1433, 1456
PaeI GCATGC 1 cut(s) 431
PciI ACATGT 3 cut(s) 1158, 1305, 1462
PcsI WCGNNNNNNNCGW 1 cut(s) 402
PctI GAATGC 1 cut(s) 982
PdmI GAANNNNTTC 3 cut(s) 668, 741, 819
PfeI GAWTC 6 cut(s) 239, 300, 832, 840, 928, 1081
PkrI GCNGC 4 cut(s) 227, 364, 426, 964
PleI GAGTC 2 cut(s) 13, 521
PpsI GAGTC 2 cut(s) 13, 521
Ppu21I YACGTR 1 cut(s) 478
PscI ACATGT 3 cut(s) 1158, 1305, 1462
PsiI TTATAA 1 cut(s) 876
Psp6I CCWGG 4 cut(s) 271, 399, 823, 1447
PspGI CCWGG 4 cut(s) 271, 399, 823, 1447
PspN4I GGNNCC 4 cut(s) 61, 816, 1015, 1105
PsuI RGATCY 2 cut(s) 123, 140
RsaI GTAC 3 cut(s) 61, 805, 1163
RsaNI GTAC 3 cut(s) 60, 804, 1162
RseI CAYNNNNRTG 2 cut(s) 944, 1163
SaqAI TTAA 7 cut(s) 137, 354, 455, 755, 1092, 1113, 1199
SatI GCNGC 4 cut(s) 226, 363, 425, 963
Sau3AI GATC 6 cut(s) 123, 140, 183, 904, 1255, 1399
ScaI AGTACT 1 cut(s) 805
SchI GAGTC 2 cut(s) 14, 521
ScrFI CCNGG 4 cut(s) 273, 401, 825, 1449
SfaNI GCATC 4 cut(s) 622, 1005, 1266, 1369
SfuI TTCGAA 2 cut(s) 1433, 1456
SmiMI CAYNNNNRTG 2 cut(s) 944, 1163
SpeI ACTAGT 1 cut(s) 800
SphI GCATGC 1 cut(s) 431
SsiI CCGC 1 cut(s) 225
SspI AATATT 3 cut(s) 741, 989, 1229
SspMI CTAG 4 cut(s) 461, 801, 867, 1149
StyD4I CCNGG 4 cut(s) 271, 399, 823, 1447
StyI CCWWGG 2 cut(s) 70, 1085
TaaI ACNGT 2 cut(s) 359, 793
TaiI ACGT 4 cut(s) 282, 408, 480, 787
TaqI TCGA 5 cut(s) 536, 903, 953, 1433, 1456
TatI WGTACW 2 cut(s) 803, 1161
TauI GCSGC 1 cut(s) 228
TfiI GAWTC 6 cut(s) 239, 300, 832, 840, 928, 1081
Tru1I TTAA 7 cut(s) 137, 354, 455, 755, 1092, 1113, 1199
Tru9I TTAA 7 cut(s) 137, 354, 455, 755, 1092, 1113, 1199
TscAI CASTG 6 cut(s) 340, 588, 798, 978, 1026, 1081
TseI GCWGC 3 cut(s) 362, 424, 962
TspDTI ATGAA 6 cut(s) 188, 235, 449, 558, 630, 677
TspRI CASTG 6 cut(s) 340, 588, 798, 978, 1026, 1081
XapI RAATTY 4 cut(s) 566, 949, 1037, 1170
XceI RCATGY 6 cut(s) 431, 1162, 1168, 1183, 1309, 1466
XcmI CCANNNNNNNNNTGG 1 cut(s) 825
XmnI GAANNNNTTC 3 cut(s) 668, 741, 819
XspI CTAG 4 cut(s) 461, 801, 867, 1149
ZraI GACGTC 2 cut(s) 280, 406
ZrmI AGTACT 1 cut(s) 805
Zsp2I ATGCAT 1 cut(s) 1412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.