Rorug07G0149800

Encodes a close homolog of the Cauliflower OR (Orange) protein. The function of OR is to induce the differentiation of proplastids or other noncolored plastids into chromoplasts for carotenoid accumulation. Both proteins contain a Cysteine-rich

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0011370
Physical Location & Seq
Forward (+)
11891421 .. 11894116
2696 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0149800.1

Sequence Viewer

Length: 573 bp
ATGCCAAAGATTGCATCAAGATCAAGGATTCGAGAACGCGTGCTGCAACCCACGGTGTCCTCCTCTCTACTGCTAGCATATCTGCCTGATAAAAAACGGGAATATGTGATTGATGATGATGCTCTAAGTCATGCTTCCGAGCTTTCAGTGGAAGGAAGAGATGATATCACTAATCTTGATGAGTTGGTCAAGGATTACAAAAGAAACAGAAGACGTGGAATGCTCGGATGGTTTAAACTGAAAGGTTTTAGTTACTCTCCAGAGATGCAGCAAAAAGTAACTAAAACATTTTCTGGAGCATGGAGAATGAGAGTAGCTCTTGCCTGTGCCCTTTTCATTTCACAATATAATGGACTGGCAAATCTACAGGAGCTTATGATGCGCCTATTCTCTCAAGAAAATGATCTTGAAGCAATGGCCACCGCAAATAACTATATCATGAGAAACTATTGTGATTCAGATTTTTCTAGATTTTGTTTTAAAAAGTCTGTCATTTCACTATCTATAAGGCCAATGTTGTGGGCCAGTAACATAGCCAGTGACTTGAGGTTAACAATGACTGCAGTAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

190

Amino Acids

21.9

Weight (kDa)

9.42

Isoelectric Point (pI)

44.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011370)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G31600 AT1G31600 AT1G31600 AT1G31600
fragaria_vesca FvH4_5g24670 FvH4_5g24670 FvH4_5g24670
malus_domestica MD06G1012100.v1.1
prunus_persica Prupe.5G014800_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0215051
rosa_laevigata RLG00000002696
rosa_multiflora Rmu_sc0016046.1_g000004
rosa_roxburghii Rroxscaffold_3G00244630
rosa_rugosa Rorug07G0149700 Rorug07G0149800
rosa_samantha Rh7AG286800 Rh7BG278300 Rh7CG306200 Rh7DG290300
rosa_wichuraiana Rw7G024460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 39
AciI CCGC 1 cut(s) 423
AcoI YGGCCR 1 cut(s) 417
AflIII ACRYGT 1 cut(s) 37
AgsI TTSAA 1 cut(s) 410
AjiI CACGTC 1 cut(s) 215
AluBI AGCT 3 cut(s) 142, 317, 373
AluI AGCT 3 cut(s) 142, 317, 373
AoxI GGCC 3 cut(s) 417, 509, 522
ApeKI GCWGC 2 cut(s) 43, 268
AspLEI GCGC 1 cut(s) 384
AspS9I GGNCC 1 cut(s) 522
AsuNHI GCTAGC 1 cut(s) 73
BaeGI GKGCMC 1 cut(s) 331
BalI TGGCCA 1 cut(s) 419
BbsI GAAGAC 1 cut(s) 217
BbvI GCAGC 2 cut(s) 30, 280
BccI CCATC 1 cut(s) 222
BfaI CTAG 2 cut(s) 74, 468
BfmI CTRYAG 2 cut(s) 365, 561
BisI GCNGC 2 cut(s) 44, 269
BlsI GCNGC 2 cut(s) 45, 270
BmgBI CACGTC 1 cut(s) 215
BmgT120I GGNCC 1 cut(s) 522
BmsI GCATC 4 cut(s) 23, 109, 255, 369
BmtI GCTAGC 1 cut(s) 77
BpiI GAAGAC 1 cut(s) 217
BplI GAGNNNNNCTC 2 cut(s) 301, 333
BpmI CTGGAG 2 cut(s) 243, 315
BpuEI CTTGAG 2 cut(s) 378, 565
BsaJI CCNNGG 1 cut(s) 51
Bse1I ACTGG 3 cut(s) 360, 525, 537
Bse3DI GCAATG 1 cut(s) 420
BseDI CCNNGG 1 cut(s) 51
BseGI GGATG 1 cut(s) 233
BseMI GCAATG 1 cut(s) 420
BseNI ACTGG 3 cut(s) 360, 525, 537
BseRI GAGGAG 1 cut(s) 52
BseSI GKGCMC 1 cut(s) 331
BseXI GCAGC 2 cut(s) 30, 280
Bsh1236I CGCG 1 cut(s) 39
BshFI GGCC 3 cut(s) 419, 511, 524
BsmI GAATGC 1 cut(s) 225
BsnI GGCC 3 cut(s) 419, 511, 524
Bsp1286I GDGCHC 1 cut(s) 331
Bsp143I GATC 2 cut(s) 20, 403
BspACI CCGC 1 cut(s) 423
BspANI GGCC 3 cut(s) 419, 511, 524
BspFNI CGCG 1 cut(s) 39
BspHI TCATGA 1 cut(s) 438
BspMAI CTGCAG 1 cut(s) 565
BspOI GCTAGC 1 cut(s) 77
BsrDI GCAATG 1 cut(s) 420
BsrI ACTGG 3 cut(s) 360, 525, 537
BssECI CCNNGG 1 cut(s) 51
BssMI GATC 2 cut(s) 20, 403
Bst4CI ACNGT 1 cut(s) 55
Bst6I CTCTTC 1 cut(s) 151
BstC8I GCNNGC 2 cut(s) 41, 75
BstDEI CTNAG 1 cut(s) 125
BstDSI CCRYGG 1 cut(s) 51
BstF5I GGATG 1 cut(s) 233
BstFNI CGCG 1 cut(s) 39
BstHHI GCGC 1 cut(s) 384
BstKTI GATC 2 cut(s) 23, 406
BstMBI GATC 2 cut(s) 20, 403
BstMWI GCNNNNNNNGC 1 cut(s) 379
BstSFI CTRYAG 2 cut(s) 365, 561
BstSLI GKGCMC 1 cut(s) 331
BstUI CGCG 1 cut(s) 39
BstV1I GCAGC 2 cut(s) 30, 280
BstV2I GAAGAC 1 cut(s) 217
BstXI CCANNNNNNTGG 1 cut(s) 519
BsuRI GGCC 3 cut(s) 419, 511, 524
BtgI CCRYGG 1 cut(s) 51
BtrI CACGTC 1 cut(s) 215
BtsCI GGATG 1 cut(s) 233
BtsIMutI CAGTG 2 cut(s) 153, 544
Cac8I GCNNGC 2 cut(s) 41, 75
CciI TCATGA 1 cut(s) 438
CfoI GCGC 1 cut(s) 384
Cfr13I GGNCC 1 cut(s) 522
CviAII CATG 3 cut(s) 131, 300, 439
CviJI RGCY 7 cut(s) 142, 317, 373, 419, 511, 524, 536
CviKI_1 RGCY 7 cut(s) 142, 317, 373, 419, 511, 524, 536
DdeI CTNAG 1 cut(s) 125
DpnI GATC 2 cut(s) 22, 405
DpnII GATC 2 cut(s) 20, 403
DraI TTTAAA 2 cut(s) 235, 481
EaeI YGGCCR 1 cut(s) 417
Eam1104I CTCTTC 1 cut(s) 151
EarI CTCTTC 1 cut(s) 151
Eco32I GATATC 1 cut(s) 166
EcoRV GATATC 1 cut(s) 166
FaeI CATG 3 cut(s) 134, 303, 442
FalI AAGNNNNNCTT 2 cut(s) 118, 150
FatI CATG 3 cut(s) 130, 299, 438
Fnu4HI GCNGC 2 cut(s) 44, 269
FokI GGATG 1 cut(s) 240
Fsp4HI GCNGC 2 cut(s) 44, 269
FspBI CTAG 2 cut(s) 74, 468
GlaI GCGC 1 cut(s) 383
GluI GCNGC 2 cut(s) 44, 269
GsuI CTGGAG 2 cut(s) 243, 315
HaeIII GGCC 3 cut(s) 419, 511, 524
HhaI GCGC 1 cut(s) 384
Hin1II CATG 3 cut(s) 134, 303, 442
Hin6I GCGC 1 cut(s) 382
HinP1I GCGC 1 cut(s) 382
HincII GTYRAC 1 cut(s) 552
HindII GTYRAC 1 cut(s) 552
HinfI GANTC 2 cut(s) 28, 455
HpaI GTTAAC 1 cut(s) 552
Hpy166II GTNNAC 1 cut(s) 552
Hpy188I TCNGA 3 cut(s) 139, 227, 460
Hpy188III TCNNGA 9 cut(s) 18, 32, 176, 260, 294, 395, 407, 439, 468
Hpy8I GTNNAC 1 cut(s) 552
HpyAV CCTTC 1 cut(s) 146
HpyCH4III ACNGT 1 cut(s) 55
HpyCH4IV ACGT 1 cut(s) 214
HpyCH4V TGCA 4 cut(s) 14, 46, 268, 563
HpyF10VI GCNNNNNNNGC 1 cut(s) 379
HpyF3I CTNAG 1 cut(s) 125
HpySE526I ACGT 1 cut(s) 214
Hsp92II CATG 3 cut(s) 134, 303, 442
HspAI GCGC 1 cut(s) 382
KspAI GTTAAC 1 cut(s) 552
Kzo9I GATC 2 cut(s) 20, 403
LmnI GCTCC 2 cut(s) 296, 370
LpnPI CCDG 8 cut(s) 99, 273, 279, 337, 341, 353, 538, 550
Lsp1109I GCAGC 2 cut(s) 30, 280
LweI GCATC 4 cut(s) 23, 109, 255, 369
MaeI CTAG 2 cut(s) 74, 468
MaeII ACGT 1 cut(s) 214
MaeIII GTNAC 5 cut(s) 251, 277, 527, 539, 565
MalI GATC 2 cut(s) 22, 405
MboI GATC 2 cut(s) 20, 403
MboII GAAGA 2 cut(s) 168, 222
MhlI GDGCHC 1 cut(s) 331
MlsI TGGCCA 1 cut(s) 419
MluI ACGCGT 1 cut(s) 37
MluNI TGGCCA 1 cut(s) 419
MnlI CCTC 3 cut(s) 70, 73, 540
Mox20I TGGCCA 1 cut(s) 419
MscI TGGCCA 1 cut(s) 419
MseI TTAA 3 cut(s) 234, 480, 551
Msp20I TGGCCA 1 cut(s) 419
MssI GTTTAAAC 1 cut(s) 235
Mva1269I GAATGC 1 cut(s) 225
MvnI CGCG 1 cut(s) 39
MwoI GCNNNNNNNGC 1 cut(s) 379
NdeII GATC 2 cut(s) 20, 403
NheI GCTAGC 1 cut(s) 73
NlaIII CATG 3 cut(s) 134, 303, 442
NmuCI GTSAC 1 cut(s) 539
PagI TCATGA 1 cut(s) 438
PctI GAATGC 1 cut(s) 225
PfeI GAWTC 2 cut(s) 28, 455
PkrI GCNGC 2 cut(s) 45, 270
PmeI GTTTAAAC 1 cut(s) 235
PspPI GGNCC 1 cut(s) 522
PstI CTGCAG 1 cut(s) 565
SaqAI TTAA 3 cut(s) 234, 480, 551
SatI GCNGC 2 cut(s) 44, 269
Sau3AI GATC 2 cut(s) 20, 403
Sau96I GGNCC 1 cut(s) 522
SduI GDGCHC 1 cut(s) 331
SetI ASST 6 cut(s) 144, 217, 247, 319, 375, 551
SfaNI GCATC 4 cut(s) 23, 109, 255, 369
SfcI CTRYAG 2 cut(s) 365, 561
SmlI CTYRAG 2 cut(s) 393, 544
SmoI CTYRAG 2 cut(s) 393, 544
SsiI CCGC 1 cut(s) 423
SspMI CTAG 2 cut(s) 74, 468
TaaI ACNGT 1 cut(s) 55
TaiI ACGT 1 cut(s) 217
TaqI TCGA 1 cut(s) 31
TfiI GAWTC 2 cut(s) 28, 455
Tru1I TTAA 3 cut(s) 234, 480, 551
Tru9I TTAA 3 cut(s) 234, 480, 551
TscAI CASTG 2 cut(s) 153, 544
TseFI GTSAC 1 cut(s) 539
TseI GCWGC 2 cut(s) 43, 268
Tsp45I GTSAC 1 cut(s) 539
TspDTI ATGAA 1 cut(s) 325
TspRI CASTG 2 cut(s) 153, 544
XbaI TCTAGA 1 cut(s) 467
XspI CTAG 2 cut(s) 74, 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.