Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0011370

Physical Location & Seq

Genomic Coordinates Forward (+)

32557317 .. 32563751

Gene Structure 6435 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG290300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGGTTTGGCGAGATTTGGGCGTCCGAAGGGAGCAGCAGAAGGGCAGTTGAGCCCCAACCTGTTCGTCGCCAACTGCGGGCCCGCCGTGGGACTATCCCACGACGCCATTGCTTCGGCGTTTGGGGCCTTCGGTCAAGTCAAAGGCGTCTACGCCGCCGACGACACCGGTGCTCGTGTCGTTGTCTCCTTTGCTGAAGAGGCCTCTGCCCAGAACGCCTTGAATGCGTTGCATGGCCGCCCTTGTGCTCACCTCGGGGGTCGTACCTTGCACATTCGCTATTCTGTTCTTCAACCCACTTCACTGGGTCGAGTCAATGACTCTGTGGAAGTATCTTTACTGGATTCTGAGTTGAATATTCCTGGCCTTTACTTATTCCACGATTTTGTCACGGCTGAAGAAGAGGAGGAGCTCCTTGCAGCAGTTGATGAAAGGCCTTGGAAAAATCTTGCAAAAAGAAGGGTTCAGCATTATGGCTATGAATTTTGTTATGAGACAAGGAATGTTGATTCTAAGAAGAATTTAGGTTCATTTCCAGCATTTGTTCCCCCTATACTTGAAAGAATATCTATGCTTCCGAAGCGCGAGGATGTTGAAACTATAGCTTTGGACCAATTAACGGTGAGCAATTGTGCTTCTCTATGCTTTATTCTGAATAATTCTGTCAATCGAGAATATAAATCTTACTTTTTAGTTAATTTATATAATGAGATAAAACAAGATCCTTGTAAGTGGGAGGTCGTGAGTTCGACTCACAATAGGCTAGTTGCTGTACCTGAGTTGTTGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0001510 GO:0002097 GO:0002098 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0008198 GO:0008270 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016300 GO:0016491 GO:0016705 GO:0016706 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0051213 GO:0055114 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy_2

Protein Analysis

263

Amino Acids

29.0

Weight (kDa)

5.68

Isoelectric Point (pI)

39.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31600 AT1G31600 AT1G31600 AT1G31600
fragaria_vesca	FvH4_5g24670 FvH4_5g24670 FvH4_5g24670
malus_domestica	MD06G1012100.v1.1
prunus_persica	Prupe.5G014800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0215051
rosa_laevigata	RLG00000002696
rosa_multiflora	Rmu_sc0016046.1_g000004
rosa_roxburghii	Rroxscaffold_3G00244630
rosa_rugosa	Rorug07G0149700 Rorug07G0149800
rosa_samantha	Rh7AG286800 Rh7BG278300 Rh7CG306200 Rh7DG290300
rosa_wichuraiana	Rw7G024460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	150
AccII	CGCG	1 cut(s)	585
AciI	CCGC	4 cut(s)	78, 84, 156, 238
AclWI	GGATC	1 cut(s)	716
AcoI	YGGCCR	1 cut(s)	235
AcsI	RAATTY	2 cut(s)	482, 520
AcuI	CTGAAG	2 cut(s)	216, 417
AcyI	GRCGYC	3 cut(s)	22, 105, 147
AfaI	GTAC	2 cut(s)	265, 774
AfiI	CCNNNNNNNGG	3 cut(s)	78, 89, 619
AgeI	ACCGGT	1 cut(s)	167
AgsI	TTSAA	5 cut(s)	223, 293, 355, 560, 596
AjnI	CCWGG	1 cut(s)	361
AluBI	AGCT	2 cut(s)	412, 605
AluI	AGCT	2 cut(s)	412, 605
Alw21I	GWGCWC	3 cut(s)	175, 250, 414
Alw26I	GTCTC	2 cut(s)	190, 488
AlwI	GGATC	1 cut(s)	716
Ama87I	CYCGRG	1 cut(s)	254
AoxI	GGCC	6 cut(s)	80, 126, 201, 235, 364, 434
ApaI	GGGCCC	1 cut(s)	84
ApeKI	GCWGC	2 cut(s)	35, 419
ApoI	RAATTY	2 cut(s)	482, 520
AsiGI	ACCGGT	1 cut(s)	167
AspLEI	GCGC	1 cut(s)	585
AspS9I	GGNCC	4 cut(s)	80, 81, 126, 610
AsuHPI	GGTGA	2 cut(s)	242, 634
AvaI	CYCGRG	1 cut(s)	254
AvaII	GGWCC	1 cut(s)	610
BaeGI	GKGCMC	1 cut(s)	84
BanII	GRGCYC	3 cut(s)	56, 84, 414
BarI	GAAGNNNNNNTAC	2 cut(s)	321, 353
BauI	CACGAG	1 cut(s)	174
Bbv12I	GWGCWC	3 cut(s)	175, 250, 414
BbvI	GCAGC	2 cut(s)	47, 431
BceAI	ACGGC	2 cut(s)	71, 408
BcgI	CGANNNNNNTGC	4 cut(s)	92, 126, 152, 186
BciT130I	CCWGG	1 cut(s)	363
BcoDI	GTCTC	2 cut(s)	190, 488
BfaI	CTAG	1 cut(s)	764
BfmI	CTRYAG	1 cut(s)	600
BisI	GCNGC	4 cut(s)	36, 156, 238, 420
BlsI	GCNGC	4 cut(s)	37, 157, 239, 421
Bme1390I	CCNGG	1 cut(s)	363
Bme18I	GGWCC	1 cut(s)	610
BmeT110I	CYCGRG	1 cut(s)	254
BmgT120I	GGNCC	4 cut(s)	80, 81, 126, 610
BmiI	GGNNCC	2 cut(s)	82, 127
BmrFI	CCNGG	1 cut(s)	363
BmrI	ACTGGG	1 cut(s)	314
BmuI	ACTGGG	1 cut(s)	314
BplI	GAGNNNNNCTC	2 cut(s)	736, 768
BsaHI	GRCGYC	3 cut(s)	22, 105, 147
BsaJI	CCNNGG	3 cut(s)	87, 253, 437
BsaWI	WCCGGW	1 cut(s)	167
Bsc4I	CCNNNNNNNGG	3 cut(s)	78, 89, 619
Bse118I	RCCGGY	1 cut(s)	167
Bse1I	ACTGG	2 cut(s)	309, 345
Bse3DI	GCAATG	1 cut(s)	108
BseBI	CCWGG	1 cut(s)	363
BseDI	CCNNGG	3 cut(s)	87, 253, 437
BseGI	GGATG	1 cut(s)	595
BseLI	CCNNNNNNNGG	3 cut(s)	78, 89, 619
BseMI	GCAATG	1 cut(s)	108
BseMII	CTCAG	2 cut(s)	339, 768
BseNI	ACTGG	2 cut(s)	309, 345
BseRI	GAGGAG	2 cut(s)	419, 422
BseSI	GKGCMC	1 cut(s)	84
BseXI	GCAGC	2 cut(s)	47, 431
Bsh1236I	CGCG	1 cut(s)	585
BshFI	GGCC	6 cut(s)	82, 128, 203, 237, 366, 436
BshTI	ACCGGT	1 cut(s)	167
BsiHKAI	GWGCWC	3 cut(s)	175, 250, 414
BsiHKCI	CYCGRG	1 cut(s)	254
BsiSI	CCGG	1 cut(s)	168
BslFI	GGGAC	1 cut(s)	105
BslI	CCNNNNNNNGG	3 cut(s)	78, 89, 619
BsmAI	GTCTC	2 cut(s)	190, 488
BsmFI	GGGAC	1 cut(s)	105
BsmI	GAATGC	1 cut(s)	229
BsnI	GGCC	6 cut(s)	82, 128, 203, 237, 366, 436
BsoBI	CYCGRG	1 cut(s)	254
Bsp120I	GGGCCC	1 cut(s)	80
Bsp1286I	GDGCHC	5 cut(s)	56, 84, 175, 250, 414
Bsp143I	GATC	1 cut(s)	721
BspACI	CCGC	4 cut(s)	78, 84, 156, 238
BspANI	GGCC	6 cut(s)	82, 128, 203, 237, 366, 436
BspCNI	CTCAG	2 cut(s)	340, 769
BspFNI	CGCG	1 cut(s)	585
BspLI	GGNNCC	2 cut(s)	82, 127
BspPI	GGATC	1 cut(s)	716
BsrDI	GCAATG	1 cut(s)	108
BsrFI	RCCGGY	1 cut(s)	167
BsrI	ACTGG	2 cut(s)	309, 345
BssAI	RCCGGY	1 cut(s)	167
BssECI	CCNNGG	3 cut(s)	87, 253, 437
BssMI	GATC	1 cut(s)	721
BssNI	GRCGYC	3 cut(s)	22, 105, 147
BssSI	CACGAG	1 cut(s)	174
BssT1I	CCWWGG	1 cut(s)	437
Bst2BI	CACGAG	1 cut(s)	174
Bst2UI	CCWGG	1 cut(s)	363
Bst4CI	ACNGT	1 cut(s)	622
Bst6I	CTCTTC	2 cut(s)	192, 396
BstACI	GRCGYC	3 cut(s)	22, 105, 147
BstC8I	GCNNGC	2 cut(s)	80, 84
BstDEI	CTNAG	3 cut(s)	348, 513, 777
BstDSI	CCRYGG	1 cut(s)	87
BstF5I	GGATG	1 cut(s)	595
BstFNI	CGCG	1 cut(s)	585
BstHHI	GCGC	1 cut(s)	585
BstKTI	GATC	1 cut(s)	724
BstMAI	GTCTC	2 cut(s)	190, 488
BstMBI	GATC	1 cut(s)	721
BstMWI	GCNNNNNNNGC	5 cut(s)	125, 200, 215, 224, 580
BstNI	CCWGG	1 cut(s)	363
BstSCI	CCNGG	1 cut(s)	361
BstSFI	CTRYAG	1 cut(s)	600
BstSLI	GKGCMC	1 cut(s)	84
BstUI	CGCG	1 cut(s)	585
BstV1I	GCAGC	2 cut(s)	47, 431
BstX2I	RGATCY	1 cut(s)	721
BstXI	CCANNNNNNTGG	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	721
BsuRI	GGCC	6 cut(s)	82, 128, 203, 237, 366, 436
BtgI	CCRYGG	1 cut(s)	87
BtsCI	GGATG	1 cut(s)	595
BtsIMutI	CAGTG	1 cut(s)	302
Cac8I	GCNNGC	2 cut(s)	80, 84
CfoI	GCGC	1 cut(s)	585
Cfr10I	RCCGGY	1 cut(s)	167
Cfr13I	GGNCC	4 cut(s)	80, 81, 126, 610
CseI	GACGC	3 cut(s)	11, 113, 136
Csp6I	GTAC	2 cut(s)	264, 773
CspAI	ACCGGT	1 cut(s)	167
CviAII	CATG	1 cut(s)	233
CviQI	GTAC	2 cut(s)	264, 773
DdeI	CTNAG	3 cut(s)	348, 513, 777
DpnI	GATC	1 cut(s)	723
DpnII	GATC	1 cut(s)	721
EaeI	YGGCCR	1 cut(s)	235
Eam1104I	CTCTTC	2 cut(s)	192, 396
EarI	CTCTTC	2 cut(s)	192, 396
Ecl136II	GAGCTC	1 cut(s)	412
Eco130I	CCWWGG	1 cut(s)	437
Eco147I	AGGCCT	2 cut(s)	203, 436
Eco24I	GRGCYC	3 cut(s)	56, 84, 414
Eco47I	GGWCC	1 cut(s)	610
Eco53kI	GAGCTC	1 cut(s)	412
Eco57I	CTGAAG	2 cut(s)	216, 417
Eco88I	CYCGRG	1 cut(s)	254
EcoICRI	GAGCTC	1 cut(s)	412
EcoO109I	RGGNCCY	1 cut(s)	126
EcoRII	CCWGG	1 cut(s)	361
EcoT14I	CCWWGG	1 cut(s)	437
EcoT38I	GRGCYC	3 cut(s)	56, 84, 414
ErhI	CCWWGG	1 cut(s)	437
FaeI	CATG	1 cut(s)	236
FaqI	GGGAC	1 cut(s)	105
FatI	CATG	1 cut(s)	232
FauI	CCCGC	2 cut(s)	71, 91
FblI	GTMKAC	1 cut(s)	150
Fnu4HI	GCNGC	4 cut(s)	36, 156, 238, 420
FokI	GGATG	1 cut(s)	602
FriOI	GRGCYC	3 cut(s)	56, 84, 414
Fsp4HI	GCNGC	4 cut(s)	36, 156, 238, 420
FspBI	CTAG	1 cut(s)	764
GlaI	GCGC	1 cut(s)	584
GluI	GCNGC	4 cut(s)	36, 156, 238, 420
HaeIII	GGCC	6 cut(s)	82, 128, 203, 237, 366, 436
HapII	CCGG	1 cut(s)	168
HgaI	GACGC	3 cut(s)	11, 113, 136
HhaI	GCGC	1 cut(s)	585
Hin1I	GRCGYC	3 cut(s)	22, 105, 147
Hin1II	CATG	1 cut(s)	236
Hin6I	GCGC	1 cut(s)	583
HinP1I	GCGC	1 cut(s)	583
HinfI	GANTC	5 cut(s)	312, 320, 344, 509, 751
HpaII	CCGG	1 cut(s)	168
HphI	GGTGA	2 cut(s)	242, 634
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	4 cut(s)	27, 349, 579, 654
Hpy188III	TCNNGA	2 cut(s)	671, 742
Hpy8I	GTNNAC	1 cut(s)	151
Hpy99I	CGWCG	3 cut(s)	71, 107, 164
HpyAV	CCTTC	4 cut(s)	22, 35, 139, 453
HpyCH4III	ACNGT	1 cut(s)	622
HpyCH4V	TGCA	4 cut(s)	232, 271, 419, 452
HpyF10VI	GCNNNNNNNGC	5 cut(s)	125, 200, 215, 224, 580
HpyF3I	CTNAG	3 cut(s)	348, 513, 777
Hsp92I	GRCGYC	3 cut(s)	22, 105, 147
Hsp92II	CATG	1 cut(s)	236
HspAI	GCGC	1 cut(s)	583
Kzo9I	GATC	1 cut(s)	721
LmnI	GCTCC	3 cut(s)	32, 409, 417
LpnPI	CCDG	8 cut(s)	74, 181, 224, 290, 326, 348, 375, 549
Lsp1109I	GCAGC	2 cut(s)	47, 431
MaeI	CTAG	1 cut(s)	764
MaeIII	GTNAC	1 cut(s)	388
MalI	GATC	1 cut(s)	723
MboI	GATC	1 cut(s)	721
MboII	GAAGA	5 cut(s)	209, 281, 410, 413, 529
MfeI	CAATTG	1 cut(s)	628
MflI	RGATCY	1 cut(s)	721
MhlI	GDGCHC	5 cut(s)	56, 84, 175, 250, 414
MluCI	AATT	6 cut(s)	482, 520, 614, 628, 658, 697
MlyI	GAGTC	3 cut(s)	314, 321, 745
MnlI	CCTC	7 cut(s)	193, 214, 263, 397, 400, 580, 730
MseI	TTAA	2 cut(s)	617, 696
MspI	CCGG	1 cut(s)	168
MspR9I	CCNGG	1 cut(s)	363
MunI	CAATTG	1 cut(s)	628
Mva1269I	GAATGC	1 cut(s)	229
MvaI	CCWGG	1 cut(s)	363
MvnI	CGCG	1 cut(s)	585
MwoI	GCNNNNNNNGC	5 cut(s)	125, 200, 215, 224, 580
NdeII	GATC	1 cut(s)	721
NlaIII	CATG	1 cut(s)	236
NlaIV	GGNNCC	2 cut(s)	82, 127
NmuCI	GTSAC	1 cut(s)	388
PceI	AGGCCT	2 cut(s)	203, 436
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PctI	GAATGC	1 cut(s)	229
PfeI	GAWTC	2 cut(s)	344, 509
PinAI	ACCGGT	1 cut(s)	167
PkrI	GCNGC	4 cut(s)	37, 157, 239, 421
PleI	GAGTC	3 cut(s)	314, 320, 745
PpsI	GAGTC	3 cut(s)	314, 320, 745
Psp124BI	GAGCTC	1 cut(s)	414
Psp6I	CCWGG	1 cut(s)	361
PspGI	CCWGG	1 cut(s)	361
PspN4I	GGNNCC	2 cut(s)	82, 127
PspOMI	GGGCCC	1 cut(s)	80
PspPI	GGNCC	4 cut(s)	80, 81, 126, 610
PsuI	RGATCY	1 cut(s)	721
RsaI	GTAC	2 cut(s)	265, 774
RsaNI	GTAC	2 cut(s)	264, 773
SacI	GAGCTC	1 cut(s)	414
SaqAI	TTAA	2 cut(s)	617, 696
SatI	GCNGC	4 cut(s)	36, 156, 238, 420
Sau3AI	GATC	1 cut(s)	721
Sau96I	GGNCC	4 cut(s)	80, 81, 126, 610
SchI	GAGTC	3 cut(s)	314, 321, 745
ScrFI	CCNGG	1 cut(s)	363
SduI	GDGCHC	5 cut(s)	56, 84, 175, 250, 414
SetI	ASST	8 cut(s)	63, 255, 269, 414, 529, 607, 741, 778
SfcI	CTRYAG	1 cut(s)	600
SgrAI	CRCCGGYG	1 cut(s)	167
SinI	GGWCC	1 cut(s)	610
Sse9I	AATT	6 cut(s)	482, 520, 614, 628, 658, 697
SseBI	AGGCCT	2 cut(s)	203, 436
SsiI	CCGC	4 cut(s)	78, 84, 156, 238
SspI	AATATT	1 cut(s)	358
SspMI	CTAG	1 cut(s)	764
SstI	GAGCTC	1 cut(s)	414
StuI	AGGCCT	2 cut(s)	203, 436
StyD4I	CCNGG	1 cut(s)	361
StyI	CCWWGG	1 cut(s)	437
TaaI	ACNGT	1 cut(s)	622
TaqI	TCGA	3 cut(s)	310, 670, 749
TaqII	GACCGA	1 cut(s)	122
TasI	AATT	6 cut(s)	482, 520, 614, 628, 658, 697
TauI	GCSGC	2 cut(s)	158, 240
TfiI	GAWTC	2 cut(s)	344, 509
Tru1I	TTAA	2 cut(s)	617, 696
Tru9I	TTAA	2 cut(s)	617, 696
TscAI	CASTG	1 cut(s)	309
TseFI	GTSAC	1 cut(s)	388
TseI	GCWGC	2 cut(s)	35, 419
Tsp45I	GTSAC	1 cut(s)	388
TspDTI	ATGAA	3 cut(s)	444, 495, 519
TspRI	CASTG	1 cut(s)	309
VpaK11BI	GGWCC	1 cut(s)	610
XapI	RAATTY	2 cut(s)	482, 520
XmiI	GTMKAC	1 cut(s)	150
XspI	CTAG	1 cut(s)	764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.