Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016046.1

Orthogroup ID

OG0011370

Physical Location & Seq

Genomic Coordinates Reverse (-)

4780 .. 5115

Gene Structure 336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016046.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

atgggtttggtgagatttgggcgtccgaagggagcagtaaaagggcagttgagctccaacctgttcgtagccaactgcaggcccgccgtgggactagcccacaacgtcattacttcggcgtttggggccttcggtcaattcaaaggcgtctacgccgacaccggtgctcgtgtcgttgtctcctttgctgaagtggcctctgcccagaacaccttgaatgcgttgcatggccgcctttgtgctcacttcgggggttgtaccttgcacattcactattctgttcttcaaccaacttcactggtgagtttgggtttccattacttcatcaaagtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0001510 GO:0002097 GO:0002098 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0008198 GO:0008270 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016300 GO:0016491 GO:0016705 GO:0016706 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0051213 GO:0055114 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy_2

Protein Analysis

111

Amino Acids

11.75

Weight (kDa)

9.94

Isoelectric Point (pI)

25.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31600 AT1G31600 AT1G31600 AT1G31600
fragaria_vesca	FvH4_5g24670 FvH4_5g24670 FvH4_5g24670
malus_domestica	MD06G1012100.v1.1
prunus_persica	Prupe.5G014800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0215051
rosa_laevigata	RLG00000002696
rosa_multiflora	Rmu_sc0016046.1_g000004
rosa_roxburghii	Rroxscaffold_3G00244630
rosa_rugosa	Rorug07G0149700 Rorug07G0149800
rosa_samantha	Rh7AG286800 Rh7BG278300 Rh7CG306200 Rh7DG290300
rosa_wichuraiana	Rw7G024460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	150
AciI	CCGC	2 cut(s)	84, 232
AcoI	YGGCCR	1 cut(s)	229
AcuI	CTGAAG	1 cut(s)	210
AcyI	GRCGYC	2 cut(s)	22, 147
AfaI	GTAC	1 cut(s)	259
AfiI	CCNNNNNNNGG	2 cut(s)	78, 89
AgeI	ACCGGT	1 cut(s)	161
AgsI	TTSAA	3 cut(s)	142, 217, 287
AluBI	AGCT	1 cut(s)	54
AluI	AGCT	1 cut(s)	54
Alw21I	GWGCWC	3 cut(s)	56, 169, 244
Alw26I	GTCTC	1 cut(s)	184
AoxI	GGCC	4 cut(s)	80, 126, 195, 229
AsiGI	ACCGGT	1 cut(s)	161
AspS9I	GGNCC	2 cut(s)	81, 126
AsuHPI	GGTGA	2 cut(s)	22, 313
BanII	GRGCYC	1 cut(s)	56
BauI	CACGAG	1 cut(s)	168
Bbv12I	GWGCWC	3 cut(s)	56, 169, 244
BceAI	ACGGC	1 cut(s)	71
BcgI	CGANNNNNNTGC	2 cut(s)	146, 180
BcoDI	GTCTC	1 cut(s)	184
BfaI	CTAG	1 cut(s)	95
BfmI	CTRYAG	1 cut(s)	76
BisI	GCNGC	1 cut(s)	232
BlsI	GCNGC	1 cut(s)	233
BmgT120I	GGNCC	2 cut(s)	81, 126
BmiI	GGNNCC	1 cut(s)	127
BsaHI	GRCGYC	2 cut(s)	22, 147
BsaJI	CCNNGG	1 cut(s)	87
BsaWI	WCCGGW	1 cut(s)	161
Bsc4I	CCNNNNNNNGG	2 cut(s)	78, 89
Bse118I	RCCGGY	1 cut(s)	161
Bse1I	ACTGG	1 cut(s)	303
BseDI	CCNNGG	1 cut(s)	87
BseLI	CCNNNNNNNGG	2 cut(s)	78, 89
BseNI	ACTGG	1 cut(s)	303
BshFI	GGCC	4 cut(s)	82, 128, 197, 231
BshTI	ACCGGT	1 cut(s)	161
BsiHKAI	GWGCWC	3 cut(s)	56, 169, 244
BsiSI	CCGG	1 cut(s)	162
BslFI	GGGAC	1 cut(s)	105
BslI	CCNNNNNNNGG	2 cut(s)	78, 89
BsmAI	GTCTC	1 cut(s)	184
BsmFI	GGGAC	1 cut(s)	105
BsmI	GAATGC	1 cut(s)	223
BsnI	GGCC	4 cut(s)	82, 128, 197, 231
Bsp1286I	GDGCHC	3 cut(s)	56, 169, 244
BspACI	CCGC	2 cut(s)	84, 232
BspANI	GGCC	4 cut(s)	82, 128, 197, 231
BspLI	GGNNCC	1 cut(s)	127
BspMAI	CTGCAG	1 cut(s)	80
BsrFI	RCCGGY	1 cut(s)	161
BsrI	ACTGG	1 cut(s)	303
BssAI	RCCGGY	1 cut(s)	161
BssECI	CCNNGG	1 cut(s)	87
BssNI	GRCGYC	2 cut(s)	22, 147
BssSI	CACGAG	1 cut(s)	168
Bst2BI	CACGAG	1 cut(s)	168
BstACI	GRCGYC	2 cut(s)	22, 147
BstC8I	GCNNGC	2 cut(s)	80, 84
BstDSI	CCRYGG	1 cut(s)	87
BstMAI	GTCTC	1 cut(s)	184
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 194
BstSFI	CTRYAG	1 cut(s)	76
BsuRI	GGCC	4 cut(s)	82, 128, 197, 231
BtgI	CCRYGG	1 cut(s)	87
BtsIMutI	CAGTG	1 cut(s)	296
Cac8I	GCNNGC	2 cut(s)	80, 84
Cfr10I	RCCGGY	1 cut(s)	161
Cfr13I	GGNCC	2 cut(s)	81, 126
CseI	GACGC	2 cut(s)	11, 136
Csp6I	GTAC	1 cut(s)	258
CspAI	ACCGGT	1 cut(s)	161
CviAII	CATG	1 cut(s)	227
CviJI	RGCY	7 cut(s)	54, 71, 82, 98, 128, 197, 231
CviKI_1	RGCY	7 cut(s)	54, 71, 82, 98, 128, 197, 231
CviQI	GTAC	1 cut(s)	258
EaeI	YGGCCR	1 cut(s)	229
Ecl136II	GAGCTC	1 cut(s)	54
Eco24I	GRGCYC	1 cut(s)	56
Eco53kI	GAGCTC	1 cut(s)	54
Eco57I	CTGAAG	1 cut(s)	210
EcoICRI	GAGCTC	1 cut(s)	54
EcoO109I	RGGNCCY	1 cut(s)	126
EcoT38I	GRGCYC	1 cut(s)	56
FaeI	CATG	1 cut(s)	230
FaiI	YATR	1 cut(s)	228
FaqI	GGGAC	1 cut(s)	105
FatI	CATG	1 cut(s)	226
FauI	CCCGC	1 cut(s)	91
FblI	GTMKAC	1 cut(s)	150
Fnu4HI	GCNGC	1 cut(s)	232
FriOI	GRGCYC	1 cut(s)	56
Fsp4HI	GCNGC	1 cut(s)	232
FspBI	CTAG	1 cut(s)	95
GluI	GCNGC	1 cut(s)	232
HaeIII	GGCC	4 cut(s)	82, 128, 197, 231
HapII	CCGG	1 cut(s)	162
HgaI	GACGC	2 cut(s)	11, 136
Hin1I	GRCGYC	2 cut(s)	22, 147
Hin1II	CATG	1 cut(s)	230
HpaII	CCGG	1 cut(s)	162
HphI	GGTGA	2 cut(s)	22, 313
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	1 cut(s)	27
Hpy8I	GTNNAC	1 cut(s)	151
HpyAV	CCTTC	2 cut(s)	22, 139
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	3 cut(s)	78, 226, 265
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 194
HpySE526I	ACGT	1 cut(s)	105
Hsp92I	GRCGYC	2 cut(s)	22, 147
Hsp92II	CATG	1 cut(s)	230
LmnI	GCTCC	2 cut(s)	32, 59
LpnPI	CCDG	5 cut(s)	64, 74, 175, 218, 284
MaeI	CTAG	1 cut(s)	95
MaeII	ACGT	1 cut(s)	105
MboII	GAAGA	1 cut(s)	275
MhlI	GDGCHC	3 cut(s)	56, 169, 244
MluCI	AATT	1 cut(s)	137
MmeI	TCCRAC	1 cut(s)	81
MnlI	CCTC	1 cut(s)	208
MspI	CCGG	1 cut(s)	162
Mva1269I	GAATGC	1 cut(s)	223
MwoI	GCNNNNNNNGC	2 cut(s)	125, 194
NlaIII	CATG	1 cut(s)	230
NlaIV	GGNNCC	1 cut(s)	127
PctI	GAATGC	1 cut(s)	223
PinAI	ACCGGT	1 cut(s)	161
PkrI	GCNGC	1 cut(s)	233
Psp124BI	GAGCTC	1 cut(s)	56
PspN4I	GGNNCC	1 cut(s)	127
PspPI	GGNCC	2 cut(s)	81, 126
PstI	CTGCAG	1 cut(s)	80
RsaI	GTAC	1 cut(s)	259
RsaNI	GTAC	1 cut(s)	258
SacI	GAGCTC	1 cut(s)	56
SatI	GCNGC	1 cut(s)	232
Sau96I	GGNCC	2 cut(s)	81, 126
SduI	GDGCHC	3 cut(s)	56, 169, 244
SetI	ASST	5 cut(s)	56, 63, 108, 215, 263
SfcI	CTRYAG	1 cut(s)	76
SgrAI	CRCCGGYG	1 cut(s)	161
Sse9I	AATT	1 cut(s)	137
SsiI	CCGC	2 cut(s)	84, 232
SspMI	CTAG	1 cut(s)	95
SstI	GAGCTC	1 cut(s)	56
TaiI	ACGT	1 cut(s)	108
TaqII	GACCGA	1 cut(s)	122
TasI	AATT	1 cut(s)	137
TauI	GCSGC	1 cut(s)	234
TscAI	CASTG	1 cut(s)	303
TspDTI	ATGAA	1 cut(s)	313
TspRI	CASTG	1 cut(s)	303
XmiI	GTMKAC	1 cut(s)	150
XspI	CTAG	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.