Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0011370

Physical Location & Seq

Genomic Coordinates Reverse (-)

37475577 .. 37481264

Gene Structure 5688 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00244630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGGGTTTGGCGAGATTTGGGCGTCCGAAGGGAGCACCAGAAGGGCAGTTGAGCCCCAACCTGTTCGTCGCCAACTGTGGGCCCGCCGTGGGACTCTCCCACGACGCCATTGCTTCGGCGTTTGGGGCCTTCGGTCAAGTCGAAGGCGTCTACGCCGCCGACGACACCGGTGCTCGTGTCGTTGTCTCCTTTGCTGAAGAGGCCTCTGCCCAGAACGCCTTGAATGCGTTGCATGGCCGCCCTTGTGCTCACCTCGGGGGTCGTACCTTGCACATTCGCTATTCTGTTCTTCAGCCCACCTCACTGGGTCGAGTCAATGACTCTGTGGAAGTATCTTTACTGGATTCCGAGTTGAATATTCCTGGCCTTTACTTATTCCACGATTTTGTCACGGCTGAAGAAGAGGAGGAGCTCCTTGCAGCAGTTGATGAAAGGCCTTGGAAAAATCTTTCAAAAAGAAGGGTTCAGCATTATGGCTATGAATTTTGTTATGAGACAAGGAATGTTGATTCTAAGAAGAATTTAGGTGCATTTCCAGCATTTGTTCCCCCTATACTTGAAAGAATATCTATGCTTCCGAACAGCGAGGATGTTGAAACTATAGCTTTGGACCAATTAACGGTTAATGAGTATCCACCTGGGGTCGGCTTGTCCCCACATATTGATACCCATTCTTCTTTTGAGGGATTAATTTTCAGCCTTTCGTTAGCAGGGCCTTGCATCATGGAGTTCAGAAGATACTTTGAAGGTGACCGGCCACCTAGAACTTCCTCAAGTATTGATATCGAAACGGAAAATTCTGAAAACAATTCAAATTTCTTAAGGAGGGCTATATATCTTCCCCCTCGGTCTTTGTTACTATTATCTGGAGAGGCACGCTATGCTTGGCATCACTACATTCCACATCATAAGATTGACAAGGTAAAAGACAGTGTGATCAGAAGAGGCTCAAGGAGGGTGTCTTTCACATTTCGTAAGTTTGGTAATCAAGTTGAAGCCTACATGGATGTTGATTTTGACATAATCACCATTACCAAATTTTCTTCCAGCATGGTATCACAGACTATGCTCCCAACTGCAAGGAGAAAAATGGGCGACTTCTCTGTGTCAGAACAACTCCTTGCCAATGTGAATTTCCACAATACTGTGATTCTCAGAGATAAAAAGGGCATGTTTCTTGCAATTGAAGATGTTGATCGGAGTTATCGGTACTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0001510 GO:0002097 GO:0002098 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0008198 GO:0008270 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016300 GO:0016491 GO:0016705 GO:0016706 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0051213 GO:0055114 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy_2

Protein Analysis

405

Amino Acids

45.34

Weight (kDa)

6.03

Isoelectric Point (pI)

49.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy_2	PF13532	122 - 325	1.6e-17	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31600 AT1G31600 AT1G31600 AT1G31600
fragaria_vesca	FvH4_5g24670 FvH4_5g24670 FvH4_5g24670
malus_domestica	MD06G1012100.v1.1
prunus_persica	Prupe.5G014800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0215051
rosa_laevigata	RLG00000002696
rosa_multiflora	Rmu_sc0016046.1_g000004
rosa_roxburghii	Rroxscaffold_3G00244630
rosa_rugosa	Rorug07G0149700 Rorug07G0149800
rosa_samantha	Rh7AG286800 Rh7BG278300 Rh7CG306200 Rh7DG290300
rosa_wichuraiana	Rw7G024460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	150
AciI	CCGC	3 cut(s)	84, 156, 238
AcoI	YGGCCR	2 cut(s)	235, 755
AcsI	RAATTY	6 cut(s)	482, 520, 796, 814, 1037, 1132
AcuI	CTGAAG	3 cut(s)	216, 275, 417
AcyI	GRCGYC	3 cut(s)	22, 105, 147
AfaI	GTAC	2 cut(s)	265, 1211
AfiI	CCNNNNNNNGG	4 cut(s)	78, 89, 619, 644
AflII	CTTAAG	1 cut(s)	820
AgeI	ACCGGT	1 cut(s)	167
AgsI	TTSAA	9 cut(s)	223, 355, 453, 560, 596, 746, 813, 995, 1187
AjnI	CCWGG	2 cut(s)	361, 637
AjuI	GAANNNNNNNTTGG	2 cut(s)	1118, 1150
AluBI	AGCT	2 cut(s)	412, 605
AluI	AGCT	2 cut(s)	412, 605
Alw21I	GWGCWC	4 cut(s)	37, 175, 250, 414
Alw26I	GTCTC	2 cut(s)	190, 488
Ama87I	CYCGRG	1 cut(s)	254
AoxI	GGCC	8 cut(s)	80, 126, 201, 235, 364, 434, 713, 755
ApaI	GGGCCC	1 cut(s)	84
ApeKI	GCWGC	1 cut(s)	419
ApoI	RAATTY	6 cut(s)	482, 520, 796, 814, 1037, 1132
AseI	ATTAAT	1 cut(s)	689
AsiGI	ACCGGT	1 cut(s)	167
AspS9I	GGNCC	5 cut(s)	80, 81, 126, 610, 713
AsuHPI	GGTGA	3 cut(s)	242, 761, 1018
AvaI	CYCGRG	1 cut(s)	254
AvaII	GGWCC	1 cut(s)	610
BaeGI	GKGCMC	1 cut(s)	84
BanII	GRGCYC	3 cut(s)	56, 84, 414
BarI	GAAGNNNNNNTAC	2 cut(s)	321, 353
BauI	CACGAG	1 cut(s)	174
Bbv12I	GWGCWC	4 cut(s)	37, 175, 250, 414
BbvI	GCAGC	1 cut(s)	431
BceAI	ACGGC	2 cut(s)	71, 408
BcgI	CGANNNNNNTGC	4 cut(s)	92, 126, 152, 186
BciT130I	CCWGG	2 cut(s)	363, 639
BciVI	GTATCC	1 cut(s)	642
BclI	TGATCA	1 cut(s)	936
BcoDI	GTCTC	2 cut(s)	190, 488
BfaI	CTAG	1 cut(s)	762
BfmI	CTRYAG	1 cut(s)	600
BfrI	CTTAAG	1 cut(s)	820
BfuI	GTATCC	1 cut(s)	642
BisI	GCNGC	3 cut(s)	156, 238, 420
BlsI	GCNGC	3 cut(s)	157, 239, 421
Bme1390I	CCNGG	2 cut(s)	363, 639
Bme18I	GGWCC	1 cut(s)	610
BmeT110I	CYCGRG	1 cut(s)	254
BmgT120I	GGNCC	5 cut(s)	80, 81, 126, 610, 713
BmiI	GGNNCC	2 cut(s)	82, 127
BmrFI	CCNGG	2 cut(s)	363, 639
BmrI	ACTGGG	1 cut(s)	314
BmsI	GCATC	2 cut(s)	729, 898
BmuI	ACTGGG	1 cut(s)	314
BpmI	CTGGAG	1 cut(s)	888
BpuEI	CTTGAG	2 cut(s)	757, 934
BsaBI	GATNNNNATC	1 cut(s)	1194
BsaHI	GRCGYC	3 cut(s)	22, 105, 147
BsaJI	CCNNGG	5 cut(s)	87, 253, 437, 638, 845
BsaWI	WCCGGW	1 cut(s)	167
Bsc4I	CCNNNNNNNGG	4 cut(s)	78, 89, 619, 644
Bse118I	RCCGGY	2 cut(s)	167, 753
Bse1I	ACTGG	2 cut(s)	309, 345
Bse3DI	GCAATG	1 cut(s)	108
Bse8I	GATNNNNATC	1 cut(s)	1194
BseBI	CCWGG	2 cut(s)	363, 639
BseDI	CCNNGG	5 cut(s)	87, 253, 437, 638, 845
BseGI	GGATG	2 cut(s)	595, 1012
BseJI	GATNNNNATC	1 cut(s)	1194
BseLI	CCNNNNNNNGG	4 cut(s)	78, 89, 619, 644
BseMI	GCAATG	1 cut(s)	108
BseMII	CTCAG	1 cut(s)	1168
BseNI	ACTGG	2 cut(s)	309, 345
BseRI	GAGGAG	2 cut(s)	419, 422
BseSI	GKGCMC	1 cut(s)	84
BseXI	GCAGC	1 cut(s)	431
BshFI	GGCC	8 cut(s)	82, 128, 203, 237, 366, 436, 715, 757
BshTI	ACCGGT	1 cut(s)	167
BsiHKAI	GWGCWC	4 cut(s)	37, 175, 250, 414
BsiHKCI	CYCGRG	1 cut(s)	254
BsiSI	CCGG	2 cut(s)	168, 754
BslFI	GGGAC	2 cut(s)	105, 637
BslI	CCNNNNNNNGG	4 cut(s)	78, 89, 619, 644
BsmAI	GTCTC	2 cut(s)	190, 488
BsmFI	GGGAC	2 cut(s)	105, 637
BsmI	GAATGC	1 cut(s)	229
BsnI	GGCC	8 cut(s)	82, 128, 203, 237, 366, 436, 715, 757
BsoBI	CYCGRG	1 cut(s)	254
Bsp120I	GGGCCC	1 cut(s)	80
Bsp1286I	GDGCHC	6 cut(s)	37, 56, 84, 175, 250, 414
Bsp143I	GATC	2 cut(s)	936, 1195
BspACI	CCGC	3 cut(s)	84, 156, 238
BspANI	GGCC	8 cut(s)	82, 128, 203, 237, 366, 436, 715, 757
BspCNI	CTCAG	1 cut(s)	1167
BspLI	GGNNCC	2 cut(s)	82, 127
BspTI	CTTAAG	1 cut(s)	820
BsrDI	GCAATG	1 cut(s)	108
BsrFI	RCCGGY	2 cut(s)	167, 753
BsrI	ACTGG	2 cut(s)	309, 345
BssAI	RCCGGY	2 cut(s)	167, 753
BssECI	CCNNGG	5 cut(s)	87, 253, 437, 638, 845
BssMI	GATC	2 cut(s)	936, 1195
BssNI	GRCGYC	3 cut(s)	22, 105, 147
BssSI	CACGAG	1 cut(s)	174
BssT1I	CCWWGG	1 cut(s)	437
Bst2BI	CACGAG	1 cut(s)	174
Bst2UI	CCWGG	2 cut(s)	363, 639
Bst4CI	ACNGT	4 cut(s)	77, 622, 932, 1147
Bst6I	CTCTTC	3 cut(s)	192, 396, 937
BstACI	GRCGYC	3 cut(s)	22, 105, 147
BstAFI	CTTAAG	1 cut(s)	820
BstAPI	GCANNNNNTGC	1 cut(s)	881
BstC8I	GCNNGC	2 cut(s)	84, 877
BstDEI	CTNAG	2 cut(s)	513, 1154
BstDSI	CCRYGG	1 cut(s)	87
BstEII	GGTNACC	1 cut(s)	749
BstF5I	GGATG	2 cut(s)	595, 1012
BstKTI	GATC	2 cut(s)	939, 1198
BstMAI	GTCTC	2 cut(s)	190, 488
BstMBI	GATC	2 cut(s)	936, 1195
BstMWI	GCNNNNNNNGC	6 cut(s)	125, 200, 215, 224, 536, 881
BstNI	CCWGG	2 cut(s)	363, 639
BstNSI	RCATGY	1 cut(s)	1174
BstPI	GGTNACC	1 cut(s)	749
BstSCI	CCNGG	2 cut(s)	361, 637
BstSFI	CTRYAG	1 cut(s)	600
BstSLI	GKGCMC	1 cut(s)	84
BstV1I	GCAGC	1 cut(s)	431
BstXI	CCANNNNNNTGG	1 cut(s)	304
BsuI	GTATCC	1 cut(s)	642
BsuRI	GGCC	8 cut(s)	82, 128, 203, 237, 366, 436, 715, 757
BtgI	CCRYGG	1 cut(s)	87
BtsCI	GGATG	2 cut(s)	595, 1012
BtsIMutI	CAGTG	2 cut(s)	302, 937
Cac8I	GCNNGC	2 cut(s)	84, 877
Cfr10I	RCCGGY	2 cut(s)	167, 753
Cfr13I	GGNCC	5 cut(s)	80, 81, 126, 610, 713
CseI	GACGC	3 cut(s)	11, 113, 136
Csp6I	GTAC	2 cut(s)	264, 1210
CspAI	ACCGGT	1 cut(s)	167
CviAII	CATG	5 cut(s)	233, 724, 1003, 1051, 1171
CviQI	GTAC	2 cut(s)	264, 1210
DdeI	CTNAG	2 cut(s)	513, 1154
DpnI	GATC	2 cut(s)	938, 1197
DpnII	GATC	2 cut(s)	936, 1195
EaeI	YGGCCR	2 cut(s)	235, 755
Eam1104I	CTCTTC	3 cut(s)	192, 396, 937
EarI	CTCTTC	3 cut(s)	192, 396, 937
Ecl136II	GAGCTC	1 cut(s)	412
Eco130I	CCWWGG	1 cut(s)	437
Eco147I	AGGCCT	2 cut(s)	203, 436
Eco24I	GRGCYC	3 cut(s)	56, 84, 414
Eco32I	GATATC	1 cut(s)	784
Eco47I	GGWCC	1 cut(s)	610
Eco53kI	GAGCTC	1 cut(s)	412
Eco57I	CTGAAG	3 cut(s)	216, 275, 417
Eco88I	CYCGRG	1 cut(s)	254
Eco91I	GGTNACC	1 cut(s)	749
EcoICRI	GAGCTC	1 cut(s)	412
EcoO109I	RGGNCCY	2 cut(s)	126, 713
EcoO65I	GGTNACC	1 cut(s)	749
EcoRII	CCWGG	2 cut(s)	361, 637
EcoRV	GATATC	1 cut(s)	784
EcoT14I	CCWWGG	1 cut(s)	437
EcoT38I	GRGCYC	3 cut(s)	56, 84, 414
ErhI	CCWWGG	1 cut(s)	437
FaeI	CATG	5 cut(s)	236, 727, 1006, 1054, 1174
FaqI	GGGAC	2 cut(s)	105, 637
FatI	CATG	5 cut(s)	232, 723, 1002, 1050, 1170
FauI	CCCGC	1 cut(s)	91
FbaI	TGATCA	1 cut(s)	936
FblI	GTMKAC	1 cut(s)	150
Fnu4HI	GCNGC	3 cut(s)	156, 238, 420
FokI	GGATG	2 cut(s)	602, 1019
FriOI	GRGCYC	3 cut(s)	56, 84, 414
Fsp4HI	GCNGC	3 cut(s)	156, 238, 420
FspBI	CTAG	1 cut(s)	762
GluI	GCNGC	3 cut(s)	156, 238, 420
GsuI	CTGGAG	1 cut(s)	888
HaeIII	GGCC	8 cut(s)	82, 128, 203, 237, 366, 436, 715, 757
HapII	CCGG	2 cut(s)	168, 754
HgaI	GACGC	3 cut(s)	11, 113, 136
Hin1I	GRCGYC	3 cut(s)	22, 105, 147
Hin1II	CATG	5 cut(s)	236, 727, 1006, 1054, 1174
HinfI	GANTC	6 cut(s)	93, 312, 320, 344, 509, 1150
HpaII	CCGG	2 cut(s)	168, 754
HphI	GGTGA	3 cut(s)	242, 761, 1018
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	9 cut(s)	27, 349, 579, 734, 802, 941, 1111, 1157, 1200
Hpy188III	TCNNGA	1 cut(s)	867
Hpy8I	GTNNAC	1 cut(s)	151
Hpy99I	CGWCG	3 cut(s)	71, 107, 164
HpyAV	CCTTC	6 cut(s)	22, 35, 137, 139, 453, 740
HpyCH4III	ACNGT	4 cut(s)	77, 622, 932, 1147
HpyCH4V	TGCA	7 cut(s)	232, 271, 419, 530, 720, 1079, 1181
HpyF10VI	GCNNNNNNNGC	6 cut(s)	125, 200, 215, 224, 536, 881
HpyF3I	CTNAG	2 cut(s)	513, 1154
Hsp92I	GRCGYC	3 cut(s)	22, 105, 147
Hsp92II	CATG	5 cut(s)	236, 727, 1006, 1054, 1174
Ksp22I	TGATCA	1 cut(s)	936
Kzo9I	GATC	2 cut(s)	936, 1195
LmnI	GCTCC	4 cut(s)	32, 409, 417, 1074
Lsp1109I	GCAGC	1 cut(s)	431
LweI	GCATC	2 cut(s)	729, 898
MaeI	CTAG	1 cut(s)	762
MaeIII	GTNAC	3 cut(s)	388, 749, 855
MalI	GATC	2 cut(s)	938, 1197
MboI	GATC	2 cut(s)	936, 1195
MfeI	CAATTG	1 cut(s)	1182
MhlI	GDGCHC	6 cut(s)	37, 56, 84, 175, 250, 414
MlyI	GAGTC	3 cut(s)	87, 314, 321
MseI	TTAA	5 cut(s)	617, 624, 689, 821, 1216
MspCI	CTTAAG	1 cut(s)	820
MspI	CCGG	2 cut(s)	168, 754
MspR9I	CCNGG	2 cut(s)	363, 639
MunI	CAATTG	1 cut(s)	1182
Mva1269I	GAATGC	1 cut(s)	229
MvaI	CCWGG	2 cut(s)	363, 639
MwoI	GCNNNNNNNGC	6 cut(s)	125, 200, 215, 224, 536, 881
NdeII	GATC	2 cut(s)	936, 1195
NlaIII	CATG	5 cut(s)	236, 727, 1006, 1054, 1174
NlaIV	GGNNCC	2 cut(s)	82, 127
NmuCI	GTSAC	2 cut(s)	388, 749
NspI	RCATGY	1 cut(s)	1174
PceI	AGGCCT	2 cut(s)	203, 436
PcsI	WCGNNNNNNNCGW	2 cut(s)	138, 159
PctI	GAATGC	1 cut(s)	229
PfeI	GAWTC	3 cut(s)	344, 509, 1150
PinAI	ACCGGT	1 cut(s)	167
PkrI	GCNGC	3 cut(s)	157, 239, 421
PleI	GAGTC	3 cut(s)	87, 314, 320
PpsI	GAGTC	3 cut(s)	87, 314, 320
PshBI	ATTAAT	1 cut(s)	689
Psp124BI	GAGCTC	1 cut(s)	414
Psp6I	CCWGG	2 cut(s)	361, 637
PspEI	GGTNACC	1 cut(s)	749
PspGI	CCWGG	2 cut(s)	361, 637
PspN4I	GGNNCC	2 cut(s)	82, 127
PspOMI	GGGCCC	1 cut(s)	80
PspPI	GGNCC	5 cut(s)	80, 81, 126, 610, 713
RsaI	GTAC	2 cut(s)	265, 1211
RsaNI	GTAC	2 cut(s)	264, 1210
SacI	GAGCTC	1 cut(s)	414
SaqAI	TTAA	5 cut(s)	617, 624, 689, 821, 1216
SatI	GCNGC	3 cut(s)	156, 238, 420
Sau3AI	GATC	2 cut(s)	936, 1195
Sau96I	GGNCC	5 cut(s)	80, 81, 126, 610, 713
SchI	GAGTC	3 cut(s)	87, 314, 321
ScrFI	CCNGG	2 cut(s)	363, 639
SduI	GDGCHC	6 cut(s)	37, 56, 84, 175, 250, 414
SfaNI	GCATC	2 cut(s)	729, 898
SfcI	CTRYAG	1 cut(s)	600
SgrAI	CRCCGGYG	1 cut(s)	167
SinI	GGWCC	1 cut(s)	610
SmlI	CTYRAG	3 cut(s)	772, 820, 949
SmoI	CTYRAG	3 cut(s)	772, 820, 949
SseBI	AGGCCT	2 cut(s)	203, 436
SsiI	CCGC	3 cut(s)	84, 156, 238
SspI	AATATT	1 cut(s)	358
SspMI	CTAG	1 cut(s)	762
SstI	GAGCTC	1 cut(s)	414
StuI	AGGCCT	2 cut(s)	203, 436
StyD4I	CCNGG	2 cut(s)	361, 637
StyI	CCWWGG	1 cut(s)	437
TaaI	ACNGT	4 cut(s)	77, 622, 932, 1147
TaqI	TCGA	3 cut(s)	141, 310, 786
TaqII	GACCGA	2 cut(s)	122, 837
TauI	GCSGC	2 cut(s)	158, 240
TfiI	GAWTC	3 cut(s)	344, 509, 1150
Tru1I	TTAA	5 cut(s)	617, 624, 689, 821, 1216
Tru9I	TTAA	5 cut(s)	617, 624, 689, 821, 1216
TscAI	CASTG	2 cut(s)	309, 937
TseFI	GTSAC	2 cut(s)	388, 749
TseI	GCWGC	1 cut(s)	419
Tsp45I	GTSAC	2 cut(s)	388, 749
TspDTI	ATGAA	2 cut(s)	444, 495
TspGWI	ACGGA	1 cut(s)	806
TspRI	CASTG	2 cut(s)	309, 937
Vha464I	CTTAAG	1 cut(s)	820
VpaK11BI	GGWCC	1 cut(s)	610
VspI	ATTAAT	1 cut(s)	689
XapI	RAATTY	6 cut(s)	482, 520, 796, 814, 1037, 1132
XceI	RCATGY	1 cut(s)	1174
XmiI	GTMKAC	1 cut(s)	150
XspI	CTAG	1 cut(s)	762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.