Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0003201

Physical Location & Seq

Genomic Coordinates Forward (+)

11884834 .. 11890434

Gene Structure 5601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0149700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGAGAAGCCTAACGCTCTCAGAGAGCGTTCTGGGTGGTGCACATTCACCGTTTTCCAAACCACCCAATAAGCCATTATGTTCTTCTTGCTATTTGCAGTCTTTCAAATTGCGCTCCAAGAATCCCTCTCTTCAAAACCCAAGTGTTGTTTCATCCAGGTATTCAAGTATGTGGCTTGCAAACAAATGTGACGAATGGTTCAGTGGCCTTTTACAAACTTCTGATAATTTAGATGGCCTTGAGTTCCGCGACCTTAATTACAAGAGGTGCAGGGTGATCAGAGAACCAATTGATACCATGGATGGTTCTGTTGCTTTAGATAAGGCGCCTGTGTCCACTCATTTTTGGAAAGCTATGCTGCTGTTTGGATTTCTTACACTTCAAGGCTCTGAGCCGGCACTTGCTCTTCCTGATCTTGCTAGTGCATTGCAGTCAGTTCCGTTTCTGGGGGACCTTGGCGATATTAGCACAGGTTTTGCTTCAGCCTTCTTGCTGATTTTTTTCTCAGAACTAGGGGACAAAACCTTCTTTATTGCGGCACTTTTAGCAGCTAGGAATTCTGCTGCTGTTGTTTTTGCTGGAACCTTCAGTGCACTTGCGGCAATGACCGTCATATCTGTTGGTCTTGGGCGAACTTTTCACTACATCGATGAAATCCTACCATTCAGGTTTGGCGAGACTGATTTACCCATTGATGATATTGCTGCAGTTTTACTTTTGGTTTATTTTGGGGTTTCAACCTTGCGAGATGCCACCTCAAGTGATGGTTTGAAAGCAGAAGATGAACAGAGGGAGGCAGAGCTAGCCGTTTCAGAGTTTACAGGAAATGGTGCTGGAATACTAGCTGCTGCTAGCACAGTCATTAGCACTTTCGCTTTAGTTTTTGTTGCTGAATGGGGAGACAAATCATTTTTTTCTACAATAGCACTTGCTGCTGCCTCTTCACCCCTTGGAGTCATTGGAGGAGCACTAGCTGGTCACGGTGTTGCAACGTTGGCAAGTTTCTTTCGTTGTTTACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0001510 GO:0002097 GO:0002098 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0008198 GO:0008270 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016300 GO:0016491 GO:0016705 GO:0016706 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0051213 GO:0055114 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy_2

Protein Analysis

340

Amino Acids

36.26

Weight (kDa)

4.97

Isoelectric Point (pI)

42.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDT1	PF01169	161 - 218	1.6e-17	Divalent cation/proton antiporter GDT1
GDT1	PF01169	289 - 334	6.2e-13	Divalent cation/proton antiporter GDT1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31650 AT1G31650
fragaria_vesca	FvH4_5g24650 FvH4_5g24650 FvH4_5g24650
malus_domestica	MD06G1012300.v1.1
prunus_persica	Prupe.5G015000_v2.0.a1 Prupe.5G015000_v2.0.a1 Prupe.5G015000_v2.0.a1 Prupe.5G015000_v2.0.a1
pyrus_communis	pycom06g01030
rosa_chinensis	RchiOBHm_Chr1g0348481 RchiOBHm_Chr3g0483451 RchiOBHm_Chr5g0060521 RchiOBHm_Chr7g0215031
rosa_laevigata	RLG00000002698 RLG00000022617
rosa_multiflora	Rmu_ssc0000134.1_g000066
rosa_roxburghii	Rroxscaffold_3G00244650
rosa_rugosa	Rorug03G0254500 Rorug07G0149700 Rorug07G0149700
rosa_samantha	Rh1AG253100 Rh3AG184200 Rh3AG254500 Rh4AG241100 Rh4CG255300 Rh5AG463000 Rh5BG374200 Rh5CG248600 Rh7AG170100 Rh7AG286600 Rh7BG278100 Rh7CG306000 Rh7DG290100
rosa_wichuraiana	Rw6G016450 Rw7G024440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	325
AccII	CGCG	1 cut(s)	249
AciI	CCGC	3 cut(s)	247, 536, 599
AclI	AACGTT	1 cut(s)	992
AcsI	RAATTY	1 cut(s)	556
AcuI	CTGAAG	2 cut(s)	465, 571
AcyI	GRCGYC	1 cut(s)	326
AfiI	CCNNNNNNNGG	1 cut(s)	446
AgsI	TTSAA	6 cut(s)	106, 134, 165, 383, 738, 772
AjnI	CCWGG	1 cut(s)	155
AjuI	GAANNNNNNNTTGG	2 cut(s)	133, 165
AluBI	AGCT	5 cut(s)	353, 551, 802, 845, 974
AluI	AGCT	5 cut(s)	353, 551, 802, 845, 974
Alw21I	GWGCWC	3 cut(s)	43, 595, 970
Alw26I	GTCTC	2 cut(s)	671, 894
Alw44I	GTGCAC	2 cut(s)	39, 591
AoxI	GGCC	2 cut(s)	205, 235
ApaLI	GTGCAC	2 cut(s)	39, 591
ApeKI	GCWGC	8 cut(s)	358, 548, 563, 704, 845, 848, 932, 935
ApoI	RAATTY	1 cut(s)	556
AspLEI	GCGC	2 cut(s)	114, 328
AspS9I	GGNCC	1 cut(s)	451
AsuHPI	GGTGA	3 cut(s)	39, 286, 936
AsuNHI	GCTAGC	2 cut(s)	802, 851
AvaII	GGWCC	1 cut(s)	451
BaeGI	GKGCMC	2 cut(s)	43, 595
BanI	GGYRCC	1 cut(s)	325
Bbv12I	GWGCWC	3 cut(s)	43, 595, 970
BbvI	GCAGC	8 cut(s)	345, 550, 560, 691, 832, 835, 919, 922
BccI	CCATC	3 cut(s)	227, 296, 758
BceAI	ACGGC	1 cut(s)	791
BciT130I	CCWGG	1 cut(s)	157
BclI	TGATCA	1 cut(s)	276
BcoDI	GTCTC	2 cut(s)	671, 894
BfaI	CTAG	7 cut(s)	420, 512, 552, 803, 842, 852, 971
BfmI	CTRYAG	1 cut(s)	705
BfoI	RGCGCY	1 cut(s)	329
Bme1390I	CCNGG	1 cut(s)	157
Bme18I	GGWCC	1 cut(s)	451
BmgT120I	GGNCC	1 cut(s)	451
BmiI	GGNNCC	3 cut(s)	327, 452, 583
BmrFI	CCNGG	1 cut(s)	157
BmsI	GCATC	1 cut(s)	739
BmtI	GCTAGC	2 cut(s)	806, 855
BpuEI	CTTGAG	2 cut(s)	260, 742
Bsa29I	ATCGAT	1 cut(s)	648
BsaHI	GRCGYC	1 cut(s)	326
BsaJI	CCNNGG	3 cut(s)	297, 454, 949
Bsc4I	CCNNNNNNNGG	1 cut(s)	446
Bse118I	RCCGGY	1 cut(s)	394
Bse3DI	GCAATG	2 cut(s)	425, 609
BseBI	CCWGG	1 cut(s)	157
BseCI	ATCGAT	1 cut(s)	648
BseDI	CCNNGG	3 cut(s)	297, 454, 949
BseGI	GGATG	2 cut(s)	152, 307
BseLI	CCNNNNNNNGG	1 cut(s)	446
BseMI	GCAATG	2 cut(s)	425, 609
BseMII	CTCAG	3 cut(s)	33, 381, 519
BseRI	GAGGAG	1 cut(s)	978
BseSI	GKGCMC	2 cut(s)	43, 595
BseXI	GCAGC	8 cut(s)	345, 550, 560, 691, 832, 835, 919, 922
BsgI	GTGCAG	1 cut(s)	289
Bsh1236I	CGCG	1 cut(s)	249
BshFI	GGCC	2 cut(s)	207, 237
BshNI	GGYRCC	1 cut(s)	325
BshVI	ATCGAT	1 cut(s)	648
BsiHKAI	GWGCWC	3 cut(s)	43, 595, 970
BsiSI	CCGG	1 cut(s)	395
BslFI	GGGAC	2 cut(s)	464, 530
BslI	CCNNNNNNNGG	1 cut(s)	446
BsmAI	GTCTC	2 cut(s)	671, 894
BsmFI	GGGAC	2 cut(s)	464, 530
BsnI	GGCC	2 cut(s)	207, 237
Bsp1286I	GDGCHC	3 cut(s)	43, 595, 970
Bsp143I	GATC	2 cut(s)	276, 412
Bsp19I	CCATGG	1 cut(s)	297
BspACI	CCGC	3 cut(s)	247, 536, 599
BspANI	GGCC	2 cut(s)	207, 237
BspCNI	CTCAG	3 cut(s)	32, 382, 518
BspDI	ATCGAT	1 cut(s)	648
BspFNI	CGCG	1 cut(s)	249
BspLI	GGNNCC	3 cut(s)	327, 452, 583
BspMAI	CTGCAG	1 cut(s)	709
BspOI	GCTAGC	2 cut(s)	806, 855
BspQI	GCTCTTC	1 cut(s)	411
BspT107I	GGYRCC	1 cut(s)	325
BsrDI	GCAATG	2 cut(s)	425, 609
BsrFI	RCCGGY	1 cut(s)	394
BssAI	RCCGGY	1 cut(s)	394
BssECI	CCNNGG	3 cut(s)	297, 454, 949
BssMI	GATC	2 cut(s)	276, 412
BssNI	GRCGYC	1 cut(s)	326
BssT1I	CCWWGG	3 cut(s)	297, 454, 949
Bst2UI	CCWGG	1 cut(s)	157
Bst4CI	ACNGT	4 cut(s)	51, 610, 859, 983
Bst6I	CTCTTC	3 cut(s)	135, 411, 946
BstACI	GRCGYC	1 cut(s)	326
BstAPI	GCANNNNNTGC	1 cut(s)	932
BstC8I	GCNNGC	4 cut(s)	177, 396, 804, 853
BstDEI	CTNAG	3 cut(s)	19, 390, 505
BstDSI	CCRYGG	1 cut(s)	297
BstF5I	GGATG	2 cut(s)	152, 307
BstFNI	CGCG	1 cut(s)	249
BstH2I	RGCGCY	1 cut(s)	329
BstHHI	GCGC	2 cut(s)	114, 328
BstKTI	GATC	2 cut(s)	279, 415
BstMAI	GTCTC	2 cut(s)	671, 894
BstMBI	GATC	2 cut(s)	276, 412
BstMWI	GCNNNNNNNGC	6 cut(s)	465, 545, 599, 803, 932, 995
BstNI	CCWGG	1 cut(s)	157
BstSCI	CCNGG	1 cut(s)	155
BstSFI	CTRYAG	1 cut(s)	705
BstSLI	GKGCMC	2 cut(s)	43, 595
BstUI	CGCG	1 cut(s)	249
BstV1I	GCAGC	8 cut(s)	345, 550, 560, 691, 832, 835, 919, 922
Bsu15I	ATCGAT	1 cut(s)	648
BsuRI	GGCC	2 cut(s)	207, 237
BsuTUI	ATCGAT	1 cut(s)	648
BtgI	CCRYGG	1 cut(s)	297
BtsCI	GGATG	2 cut(s)	152, 307
BtsIMutI	CAGTG	2 cut(s)	208, 595
Cac8I	GCNNGC	4 cut(s)	177, 396, 804, 853
CfoI	GCGC	2 cut(s)	114, 328
Cfr10I	RCCGGY	1 cut(s)	394
Cfr13I	GGNCC	1 cut(s)	451
ClaI	ATCGAT	1 cut(s)	648
CviAII	CATG	1 cut(s)	298
DdeI	CTNAG	3 cut(s)	19, 390, 505
DinI	GGCGCC	1 cut(s)	327
DpnI	GATC	2 cut(s)	278, 414
DpnII	GATC	2 cut(s)	276, 412
Eam1104I	CTCTTC	3 cut(s)	135, 411, 946
EarI	CTCTTC	3 cut(s)	135, 411, 946
Eco130I	CCWWGG	3 cut(s)	297, 454, 949
Eco47I	GGWCC	1 cut(s)	451
Eco57I	CTGAAG	2 cut(s)	465, 571
EcoO109I	RGGNCCY	1 cut(s)	451
EcoRI	GAATTC	1 cut(s)	556
EcoRII	CCWGG	1 cut(s)	155
EcoT14I	CCWWGG	3 cut(s)	297, 454, 949
EgeI	GGCGCC	1 cut(s)	327
EheI	GGCGCC	1 cut(s)	327
ErhI	CCWWGG	3 cut(s)	297, 454, 949
FaeI	CATG	1 cut(s)	301
FaiI	YATR	5 cut(s)	79, 170, 299, 356, 614
FaqI	GGGAC	2 cut(s)	464, 530
FatI	CATG	1 cut(s)	297
FbaI	TGATCA	1 cut(s)	276
FokI	GGATG	2 cut(s)	139, 314
FspBI	CTAG	7 cut(s)	420, 512, 552, 803, 842, 852, 971
GlaI	GCGC	2 cut(s)	113, 327
HaeII	RGCGCY	1 cut(s)	329
HaeIII	GGCC	2 cut(s)	207, 237
HapII	CCGG	1 cut(s)	395
HhaI	GCGC	2 cut(s)	114, 328
Hin1I	GRCGYC	1 cut(s)	326
Hin1II	CATG	1 cut(s)	301
Hin6I	GCGC	2 cut(s)	112, 326
HinP1I	GCGC	2 cut(s)	112, 326
HinfI	GANTC	2 cut(s)	121, 954
HpaII	CCGG	1 cut(s)	395
HphI	GGTGA	3 cut(s)	39, 286, 936
Hpy166II	GTNNAC	5 cut(s)	41, 336, 593, 819, 1016
Hpy188I	TCNGA	6 cut(s)	22, 223, 281, 391, 508, 814
Hpy188III	TCNNGA	1 cut(s)	410
Hpy8I	GTNNAC	5 cut(s)	41, 336, 593, 819, 1016
HpyAV	CCTTC	3 cut(s)	496, 535, 595
HpyCH4III	ACNGT	4 cut(s)	51, 610, 859, 983
HpyCH4IV	ACGT	1 cut(s)	992
HpyCH4V	TGCA	9 cut(s)	41, 97, 179, 270, 425, 430, 593, 707, 989
HpyF10VI	GCNNNNNNNGC	6 cut(s)	465, 545, 599, 803, 932, 995
HpyF3I	CTNAG	3 cut(s)	19, 390, 505
HpySE526I	ACGT	1 cut(s)	992
Hsp92I	GRCGYC	1 cut(s)	326
Hsp92II	CATG	1 cut(s)	301
HspAI	GCGC	2 cut(s)	112, 326
KasI	GGCGCC	1 cut(s)	325
KroI	GCCGGC	1 cut(s)	394
KroNI	GCCGGC	1 cut(s)	396
Ksp22I	TGATCA	1 cut(s)	276
Kzo9I	GATC	2 cut(s)	276, 412
LguI	GCTCTTC	1 cut(s)	411
LmnI	GCTCC	2 cut(s)	119, 965
Lsp1109I	GCAGC	8 cut(s)	345, 550, 560, 691, 832, 835, 919, 922
LweI	GCATC	1 cut(s)	739
MaeI	CTAG	7 cut(s)	420, 512, 552, 803, 842, 852, 971
MaeII	ACGT	1 cut(s)	992
MaeIII	GTNAC	2 cut(s)	188, 977
MalI	GATC	2 cut(s)	278, 414
MboI	GATC	2 cut(s)	276, 412
MboII	GAAGA	5 cut(s)	75, 122, 398, 791, 933
MfeI	CAATTG	1 cut(s)	288
MhlI	GDGCHC	3 cut(s)	43, 595, 970
MluCI	AATT	5 cut(s)	107, 226, 256, 288, 556
Mly113I	GGCGCC	1 cut(s)	326
MlyI	GAGTC	1 cut(s)	963
MnlI	CCTC	7 cut(s)	136, 258, 766, 783, 787, 949, 956
MroNI	GCCGGC	1 cut(s)	394
MseI	TTAA	1 cut(s)	255
MspI	CCGG	1 cut(s)	395
MspR9I	CCNGG	1 cut(s)	157
MunI	CAATTG	1 cut(s)	288
MvaI	CCWGG	1 cut(s)	157
MvnI	CGCG	1 cut(s)	249
MwoI	GCNNNNNNNGC	6 cut(s)	465, 545, 599, 803, 932, 995
NaeI	GCCGGC	1 cut(s)	396
NarI	GGCGCC	1 cut(s)	326
NcoI	CCATGG	1 cut(s)	297
NdeII	GATC	2 cut(s)	276, 412
NgoMIV	GCCGGC	1 cut(s)	394
NheI	GCTAGC	2 cut(s)	802, 851
NlaIII	CATG	1 cut(s)	301
NlaIV	GGNNCC	3 cut(s)	327, 452, 583
NmuCI	GTSAC	2 cut(s)	188, 977
PciSI	GCTCTTC	1 cut(s)	411
PdiI	GCCGGC	1 cut(s)	396
PfeI	GAWTC	1 cut(s)	121
PleI	GAGTC	1 cut(s)	962
PluTI	GGCGCC	1 cut(s)	329
PpsI	GAGTC	1 cut(s)	962
PpuMI	RGGWCCY	1 cut(s)	451
Psp1406I	AACGTT	1 cut(s)	992
Psp5II	RGGWCCY	1 cut(s)	451
Psp6I	CCWGG	1 cut(s)	155
PspGI	CCWGG	1 cut(s)	155
PspN4I	GGNNCC	3 cut(s)	327, 452, 583
PspPI	GGNCC	1 cut(s)	451
PspPPI	RGGWCCY	1 cut(s)	451
PstI	CTGCAG	1 cut(s)	709
SapI	GCTCTTC	1 cut(s)	411
SaqAI	TTAA	1 cut(s)	255
Sau3AI	GATC	2 cut(s)	276, 412
Sau96I	GGNCC	1 cut(s)	451
SchI	GAGTC	1 cut(s)	963
ScrFI	CCNGG	1 cut(s)	157
SduI	GDGCHC	3 cut(s)	43, 595, 970
SfaNI	GCATC	1 cut(s)	739
SfcI	CTRYAG	1 cut(s)	705
SfoI	GGCGCC	1 cut(s)	327
SinI	GGWCC	1 cut(s)	451
SmlI	CTYRAG	2 cut(s)	239, 757
SmoI	CTYRAG	2 cut(s)	239, 757
Sse9I	AATT	5 cut(s)	107, 226, 256, 288, 556
SsiI	CCGC	3 cut(s)	247, 536, 599
SspDI	GGCGCC	1 cut(s)	325
SspMI	CTAG	7 cut(s)	420, 512, 552, 803, 842, 852, 971
StyD4I	CCNGG	1 cut(s)	155
StyI	CCWWGG	3 cut(s)	297, 454, 949
TaaI	ACNGT	4 cut(s)	51, 610, 859, 983
TaiI	ACGT	1 cut(s)	995
TaqI	TCGA	1 cut(s)	648
TasI	AATT	5 cut(s)	107, 226, 256, 288, 556
TauI	GCSGC	2 cut(s)	539, 602
TfiI	GAWTC	1 cut(s)	121
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TscAI	CASTG	2 cut(s)	208, 595
TseFI	GTSAC	2 cut(s)	188, 977
TseI	GCWGC	8 cut(s)	358, 548, 563, 704, 845, 848, 932, 935
Tsp45I	GTSAC	2 cut(s)	188, 977
TspDTI	ATGAA	3 cut(s)	141, 666, 798
TspGWI	ACGGA	1 cut(s)	429
TspRI	CASTG	2 cut(s)	208, 595
VneI	GTGCAC	2 cut(s)	39, 591
VpaK11BI	GGWCC	1 cut(s)	451
XapI	RAATTY	1 cut(s)	556
XspI	CTAG	7 cut(s)	420, 512, 552, 803, 842, 852, 971

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.