Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0003201

Physical Location & Seq

Genomic Coordinates Forward (+)

17519392 .. 17561309

Gene Structure 41918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG184200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGAACAAAAACGAAGTGGCTTACTTAGCATTGTATCCTTCTCCTGCTTGCTCAGTCTTTGAGCCTAGGAACAAGGTTGAATGGCAAAATGGTGCTAATGGCCGGACAGTAGAGATTATGATTCCGAAAGCTCGTGCAGATATACACATCAATCTTCCAGCACTTAAGAAGTTGGACTCGATGCTTATTGAAACACTTGATTCAATGGTGGATACTGAGTTTGGGTATGTAGAAGGTGGTAGCAGGGCAGAAGGACGAAACAGAACTCCAGGTCAGAGCAAGAGATGGTGGCTGCCATCACCTCAGGTACCAGCTACTGGATTCTGGATCTATTATGATTCCGAAAGCTCGTGCAGATATACACATCAATCTTCCAGCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010769 GO:0010817 GO:0016020 GO:0016043 GO:0016049 GO:0016324 GO:0017016 GO:0017048 GO:0019899 GO:0022414 GO:0022603 GO:0022604 GO:0030154 GO:0031267 GO:0032092 GO:0032501 GO:0032502 GO:0032879 GO:0032989 GO:0040007 GO:0040008 GO:0043393 GO:0043900 GO:0044093 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0045595 GO:0048468 GO:0048518 GO:0048588 GO:0048589 GO:0048638 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051020 GO:0051049 GO:0051098 GO:0051099 GO:0051128 GO:0051239 GO:0051510 GO:0051704 GO:0060284 GO:0060560 GO:0065007 GO:0065008 GO:0065009 GO:0071840 GO:0071944 GO:0080092 GO:0098590 GO:0098772 GO:1904424 GO:1904426 GO:1904475 GO:1904477 GO:1905097 GO:1905099 GO:2000012 GO:2000241 GO:2001106 GO:2001108

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRONE

Protein Analysis

127

Amino Acids

14.34

Weight (kDa)

6.72

Isoelectric Point (pI)

74.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRONE	PF03759	27 - 108	1.8e-30	PRONE (Plant-specific Rop nucleotide exchanger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31650 AT1G31650
fragaria_vesca	FvH4_5g24650 FvH4_5g24650 FvH4_5g24650
malus_domestica	MD06G1012300.v1.1
prunus_persica	Prupe.5G015000_v2.0.a1 Prupe.5G015000_v2.0.a1 Prupe.5G015000_v2.0.a1 Prupe.5G015000_v2.0.a1
pyrus_communis	pycom06g01030
rosa_chinensis	RchiOBHm_Chr1g0348481 RchiOBHm_Chr3g0483451 RchiOBHm_Chr5g0060521 RchiOBHm_Chr7g0215031
rosa_laevigata	RLG00000002698 RLG00000022617
rosa_multiflora	Rmu_ssc0000134.1_g000066
rosa_roxburghii	Rroxscaffold_3G00244650
rosa_rugosa	Rorug03G0254500 Rorug07G0149700 Rorug07G0149700
rosa_samantha	Rh1AG253100 Rh3AG184200 Rh3AG254500 Rh4AG241100 Rh4CG255300 Rh5AG463000 Rh5BG374200 Rh5CG248600 Rh7AG170100 Rh7AG286600 Rh7BG278100 Rh7CG306000 Rh7DG290100
rosa_wichuraiana	Rw6G016450 Rw7G024440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	307
AccB1I	GGYRCC	1 cut(s)	307
AccB7I	CCANNNNNTGG	1 cut(s)	317
AclWI	GGATC	1 cut(s)	335
AcoI	YGGCCR	1 cut(s)	100
AfaI	GTAC	1 cut(s)	309
AfiI	CCNNNNNNNGG	1 cut(s)	317
AflII	CTTAAG	1 cut(s)	164
AgsI	TTSAA	3 cut(s)	80, 191, 204
AjnI	CCWGG	1 cut(s)	268
AluBI	AGCT	3 cut(s)	131, 314, 348
AluI	AGCT	3 cut(s)	131, 314, 348
AlwI	GGATC	1 cut(s)	335
AlwNI	CAGNNNCTG	1 cut(s)	317
AoxI	GGCC	1 cut(s)	100
ApeKI	GCWGC	1 cut(s)	292
Asp718I	GGTACC	1 cut(s)	307
AspA2I	CCTAGG	1 cut(s)	65
AsuHPI	GGTGA	1 cut(s)	291
AvrII	CCTAGG	1 cut(s)	65
AxyI	CCTNAGG	1 cut(s)	303
BanI	GGYRCC	1 cut(s)	307
BauI	CACGAG	2 cut(s)	132, 349
BbvI	GCAGC	1 cut(s)	279
BccI	CCATC	2 cut(s)	279, 304
BciT130I	CCWGG	1 cut(s)	270
BciVI	GTATCC	2 cut(s)	45, 205
BfaI	CTAG	1 cut(s)	66
BfrI	CTTAAG	1 cut(s)	164
BfuI	GTATCC	2 cut(s)	45, 205
BisI	GCNGC	1 cut(s)	293
BlnI	CCTAGG	1 cut(s)	65
BlsI	GCNGC	1 cut(s)	294
Bme1390I	CCNGG	1 cut(s)	270
BmiI	GGNNCC	1 cut(s)	309
BmrFI	CCNGG	1 cut(s)	270
BmsI	GCATC	1 cut(s)	171
BpmI	CTGGAG	1 cut(s)	252
BsaJI	CCNNGG	1 cut(s)	65
Bsc4I	CCNNNNNNNGG	1 cut(s)	317
Bse1I	ACTGG	1 cut(s)	322
Bse21I	CCTNAGG	1 cut(s)	303
BseBI	CCWGG	1 cut(s)	270
BseDI	CCNNGG	1 cut(s)	65
BseLI	CCNNNNNNNGG	1 cut(s)	317
BseMII	CTCAG	3 cut(s)	66, 207, 317
BseNI	ACTGG	1 cut(s)	322
BseXI	GCAGC	1 cut(s)	279
BsgI	GTGCAG	2 cut(s)	156, 373
BshFI	GGCC	1 cut(s)	102
BshNI	GGYRCC	1 cut(s)	307
BsiSI	CCGG	1 cut(s)	103
BslI	CCNNNNNNNGG	1 cut(s)	317
BsnI	GGCC	1 cut(s)	102
Bsp143I	GATC	1 cut(s)	327
BspANI	GGCC	1 cut(s)	102
BspCNI	CTCAG	3 cut(s)	65, 208, 316
BspLI	GGNNCC	1 cut(s)	309
BspPI	GGATC	1 cut(s)	335
BspT107I	GGYRCC	1 cut(s)	307
BspTI	CTTAAG	1 cut(s)	164
BsrI	ACTGG	1 cut(s)	322
BssECI	CCNNGG	1 cut(s)	65
BssMI	GATC	1 cut(s)	327
BssSI	CACGAG	2 cut(s)	132, 349
BssT1I	CCWWGG	1 cut(s)	65
Bst2BI	CACGAG	2 cut(s)	132, 349
Bst2UI	CCWGG	1 cut(s)	270
Bst4CI	ACNGT	1 cut(s)	109
BstAFI	CTTAAG	1 cut(s)	164
BstC8I	GCNNGC	1 cut(s)	49
BstDEI	CTNAG	4 cut(s)	25, 52, 216, 303
BstKTI	GATC	1 cut(s)	330
BstMBI	GATC	1 cut(s)	327
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstNI	CCWGG	1 cut(s)	270
BstSCI	CCNGG	1 cut(s)	268
BstV1I	GCAGC	1 cut(s)	279
BstX2I	RGATCY	1 cut(s)	327
BstYI	RGATCY	1 cut(s)	327
Bsu36I	CCTNAGG	1 cut(s)	303
BsuI	GTATCC	2 cut(s)	45, 205
BsuRI	GGCC	1 cut(s)	102
Cac8I	GCNNGC	1 cut(s)	49
CaiI	CAGNNNCTG	1 cut(s)	317
Csp6I	GTAC	1 cut(s)	308
CviJI	RGCY	7 cut(s)	20, 64, 102, 131, 292, 314, 348
CviKI_1	RGCY	7 cut(s)	20, 64, 102, 131, 292, 314, 348
CviQI	GTAC	1 cut(s)	308
DdeI	CTNAG	4 cut(s)	25, 52, 216, 303
DpnI	GATC	1 cut(s)	329
DpnII	GATC	1 cut(s)	327
EaeI	YGGCCR	1 cut(s)	100
Eco130I	CCWWGG	1 cut(s)	65
Eco81I	CCTNAGG	1 cut(s)	303
EcoRII	CCWGG	1 cut(s)	268
EcoT14I	CCWWGG	1 cut(s)	65
ErhI	CCWWGG	1 cut(s)	65
FaiI	YATR	5 cut(s)	119, 143, 228, 336, 360
Fnu4HI	GCNGC	1 cut(s)	293
Fsp4HI	GCNGC	1 cut(s)	293
FspBI	CTAG	1 cut(s)	66
GluI	GCNGC	1 cut(s)	293
GsuI	CTGGAG	1 cut(s)	252
HaeIII	GGCC	1 cut(s)	102
HapII	CCGG	1 cut(s)	103
HinfI	GANTC	5 cut(s)	121, 176, 200, 321, 338
HpaII	CCGG	1 cut(s)	103
HphI	GGTGA	1 cut(s)	291
Hpy188I	TCNGA	3 cut(s)	126, 276, 343
Hpy188III	TCNNGA	1 cut(s)	325
HpyAV	CCTTC	3 cut(s)	48, 227, 245
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4V	TGCA	2 cut(s)	137, 354
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpyF3I	CTNAG	4 cut(s)	25, 52, 216, 303
KpnI	GGTACC	1 cut(s)	311
Kzo9I	GATC	1 cut(s)	327
Lsp1109I	GCAGC	1 cut(s)	279
LweI	GCATC	1 cut(s)	171
MaeI	CTAG	1 cut(s)	66
MalI	GATC	1 cut(s)	329
MboI	GATC	1 cut(s)	327
MboII	GAAGA	2 cut(s)	146, 363
MflI	RGATCY	1 cut(s)	327
MlyI	GAGTC	1 cut(s)	170
MmeI	TCCRAC	1 cut(s)	153
MnlI	CCTC	1 cut(s)	312
MseI	TTAA	2 cut(s)	165, 382
MspCI	CTTAAG	1 cut(s)	164
MspI	CCGG	1 cut(s)	103
MspR9I	CCNGG	1 cut(s)	270
MvaI	CCWGG	1 cut(s)	270
MwoI	GCNNNNNNNGC	1 cut(s)	26
NdeII	GATC	1 cut(s)	327
NlaIV	GGNNCC	1 cut(s)	309
PfeI	GAWTC	4 cut(s)	121, 200, 321, 338
PflMI	CCANNNNNTGG	1 cut(s)	317
PkrI	GCNGC	1 cut(s)	294
PleI	GAGTC	1 cut(s)	170
PpsI	GAGTC	1 cut(s)	170
Psp6I	CCWGG	1 cut(s)	268
PspGI	CCWGG	1 cut(s)	268
PspN4I	GGNNCC	1 cut(s)	309
PstNI	CAGNNNCTG	1 cut(s)	317
PsuI	RGATCY	1 cut(s)	327
RsaI	GTAC	1 cut(s)	309
RsaNI	GTAC	1 cut(s)	308
SaqAI	TTAA	2 cut(s)	165, 382
SatI	GCNGC	1 cut(s)	293
Sau3AI	GATC	1 cut(s)	327
SchI	GAGTC	1 cut(s)	170
ScrFI	CCNGG	1 cut(s)	270
SetI	ASST	8 cut(s)	78, 133, 238, 274, 304, 309, 316, 350
SfaNI	GCATC	1 cut(s)	171
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
SspMI	CTAG	1 cut(s)	66
StyD4I	CCNGG	1 cut(s)	268
StyI	CCWWGG	1 cut(s)	65
TaaI	ACNGT	1 cut(s)	109
TaqI	TCGA	1 cut(s)	179
TfiI	GAWTC	4 cut(s)	121, 200, 321, 338
Tru1I	TTAA	2 cut(s)	165, 382
Tru9I	TTAA	2 cut(s)	165, 382
TseI	GCWGC	1 cut(s)	292
TspDTI	ATGAA	1 cut(s)	17
Van91I	CCANNNNNTGG	1 cut(s)	317
Vha464I	CTTAAG	1 cut(s)	164
XmaJI	CCTAGG	1 cut(s)	65
XspI	CTAG	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.