Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003201

Physical Location & Seq

Genomic Coordinates Reverse (-)

29715475 .. 29716598

Gene Structure 1124 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44820

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGGTTTGCAACTGACTCACTGGATGATGATGCTTCCACCTGTTCTTCTGGCAAAGATGCTTTTGGGTTATAACGCGTGGAAGTATACAGATGTGGAGGCAATGAAAGAAAAGTTTGCAAAGCTGCTATTGGGTGAAGATATTATAGGAGGGTACAAGGGCCTCAGCACTGCTTTAGCATTGTCAAATGCCATCACAAATCTAGCAGCAACGGTTTTTGGAGAGCTGTGGAAACTGGAACCACTATCTGAAGAGAGGAAAACAAAATGGCAAAGAGAAATGGACTGGAAAAATGGTGCTAATGGCCGGACATTAGAGATTTTGACTCCGAAAGCTCGTGCAGACATACACATCAATCTTCCAGCACTTAAGAAGTTGGACTTGATGCTTATTGAAACACTTGATTCATTGGTGGTTACTGAGTTTGGGTATGTAGAAGGTGGTAGCAGGGCAGAAGGACGAAACAGAACTCCAGGTCAGAGCAAGAGATGGTGGCTCCCATCACCTCAGGTACCAGCTACTGGACTCTCTGATACAGAAAAGAATAAGTTACTTAAACAGGGTAAGGTGGTACATCAAGTATTCAAGGCTGCCAGAACCATCAATGAAAGTGTTCTTCTTGAAATGCATCTGCCAACCATTATCAGGGATGCACTTCCCAAGGTAGTGAAATTTTTTCTGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010769 GO:0010817 GO:0016020 GO:0016043 GO:0016049 GO:0016324 GO:0017016 GO:0017048 GO:0019899 GO:0022414 GO:0022603 GO:0022604 GO:0030154 GO:0031267 GO:0032092 GO:0032501 GO:0032502 GO:0032879 GO:0032989 GO:0040007 GO:0040008 GO:0043393 GO:0043900 GO:0044093 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0045595 GO:0048468 GO:0048518 GO:0048588 GO:0048589 GO:0048638 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051020 GO:0051049 GO:0051098 GO:0051099 GO:0051128 GO:0051239 GO:0051510 GO:0051704 GO:0060284 GO:0060560 GO:0065007 GO:0065008 GO:0065009 GO:0071840 GO:0071944 GO:0080092 GO:0098590 GO:0098772 GO:1904424 GO:1904426 GO:1904475 GO:1904477 GO:1905097 GO:1905099 GO:2000012 GO:2000241 GO:2001106 GO:2001108

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRONE

Protein Analysis

228

Amino Acids

25.66

Weight (kDa)

9.5

Isoelectric Point (pI)

42.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRONE	PF03759	31 - 224	2.6e-80	PRONE (Plant-specific Rop nucleotide exchanger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31650 AT1G31650
fragaria_vesca	FvH4_5g24650 FvH4_5g24650 FvH4_5g24650
malus_domestica	MD06G1012300.v1.1
prunus_persica	Prupe.5G015000_v2.0.a1 Prupe.5G015000_v2.0.a1 Prupe.5G015000_v2.0.a1 Prupe.5G015000_v2.0.a1
pyrus_communis	pycom06g01030
rosa_chinensis	RchiOBHm_Chr1g0348481 RchiOBHm_Chr3g0483451 RchiOBHm_Chr5g0060521 RchiOBHm_Chr7g0215031
rosa_laevigata	RLG00000002698 RLG00000022617
rosa_multiflora	Rmu_ssc0000134.1_g000066
rosa_roxburghii	Rroxscaffold_3G00244650
rosa_rugosa	Rorug03G0254500 Rorug07G0149700 Rorug07G0149700
rosa_samantha	Rh1AG253100 Rh3AG184200 Rh3AG254500 Rh4AG241100 Rh4CG255300 Rh5AG463000 Rh5BG374200 Rh5CG248600 Rh7AG170100 Rh7AG286600 Rh7BG278100 Rh7CG306000 Rh7DG290100
rosa_wichuraiana	Rw6G016450 Rw7G024440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	72
Acc65I	GGTACC	1 cut(s)	511
AccB1I	GGYRCC	1 cut(s)	511
AccB7I	CCANNNNNTGG	1 cut(s)	521
AccI	GTMKAC	1 cut(s)	86
AccII	CGCG	1 cut(s)	77
AcoI	YGGCCR	1 cut(s)	304
AcsI	RAATTY	1 cut(s)	671
AcuI	CTGAAG	1 cut(s)	270
AfaI	GTAC	3 cut(s)	155, 513, 573
AfiI	CCNNNNNNNGG	2 cut(s)	521, 645
AflII	CTTAAG	1 cut(s)	368
AflIII	ACRYGT	1 cut(s)	75
AgsI	TTSAA	3 cut(s)	395, 586, 623
AjnI	CCWGG	1 cut(s)	472
AluBI	AGCT	4 cut(s)	124, 226, 335, 518
AluI	AGCT	4 cut(s)	124, 226, 335, 518
AlwNI	CAGNNNCTG	1 cut(s)	521
AoxI	GGCC	2 cut(s)	160, 304
ApeKI	GCWGC	3 cut(s)	124, 206, 590
ApoI	RAATTY	1 cut(s)	671
Asp700I	GAANNNNTTC	1 cut(s)	612
Asp718I	GGTACC	1 cut(s)	511
AspS9I	GGNCC	1 cut(s)	160
AsuHPI	GGTGA	2 cut(s)	146, 495
AxyI	CCTNAGG	1 cut(s)	507
BanI	GGYRCC	1 cut(s)	511
BauI	CACGAG	1 cut(s)	336
BbvCI	CCTCAGC	1 cut(s)	164
BbvI	GCAGC	3 cut(s)	111, 218, 577
BccI	CCATC	4 cut(s)	200, 483, 508, 608
BciT130I	CCWGG	1 cut(s)	474
BfaI	CTAG	1 cut(s)	203
BfrI	CTTAAG	1 cut(s)	368
BisI	GCNGC	3 cut(s)	125, 207, 591
BlsI	GCNGC	3 cut(s)	126, 208, 592
Bme1390I	CCNGG	1 cut(s)	474
BmgT120I	GGNCC	1 cut(s)	160
BmiI	GGNNCC	3 cut(s)	240, 497, 513
BmrFI	CCNGG	1 cut(s)	474
BmsI	GCATC	5 cut(s)	21, 48, 375, 637, 640
BpmI	CTGGAG	1 cut(s)	456
Bpu10I	CCTNAGC	1 cut(s)	164
BsaJI	CCNNGG	1 cut(s)	660
Bsc4I	CCNNNNNNNGG	2 cut(s)	521, 645
Bse1I	ACTGG	4 cut(s)	26, 240, 290, 526
Bse21I	CCTNAGG	1 cut(s)	507
Bse3DI	GCAATG	1 cut(s)	108
BseBI	CCWGG	1 cut(s)	474
BseDI	CCNNGG	1 cut(s)	660
BseGI	GGATG	2 cut(s)	30, 655
BseLI	CCNNNNNNNGG	2 cut(s)	521, 645
BseMI	GCAATG	1 cut(s)	108
BseMII	CTCAG	3 cut(s)	178, 411, 521
BseNI	ACTGG	4 cut(s)	26, 240, 290, 526
BseXI	GCAGC	3 cut(s)	111, 218, 577
BsgI	GTGCAG	1 cut(s)	360
Bsh1236I	CGCG	1 cut(s)	77
BshFI	GGCC	2 cut(s)	162, 306
BshNI	GGYRCC	1 cut(s)	511
BsiSI	CCGG	1 cut(s)	307
BslI	CCNNNNNNNGG	2 cut(s)	521, 645
BsnI	GGCC	2 cut(s)	162, 306
BspANI	GGCC	2 cut(s)	162, 306
BspCNI	CTCAG	3 cut(s)	177, 412, 520
BspFNI	CGCG	1 cut(s)	77
BspLI	GGNNCC	3 cut(s)	240, 497, 513
BspT107I	GGYRCC	1 cut(s)	511
BspTI	CTTAAG	1 cut(s)	368
BsrDI	GCAATG	1 cut(s)	108
BsrI	ACTGG	4 cut(s)	26, 240, 290, 526
BssECI	CCNNGG	1 cut(s)	660
BssNAI	GTATAC	1 cut(s)	87
BssSI	CACGAG	1 cut(s)	336
BssT1I	CCWWGG	1 cut(s)	660
Bst1107I	GTATAC	1 cut(s)	87
Bst2BI	CACGAG	1 cut(s)	336
Bst2UI	CCWGG	1 cut(s)	474
Bst4CI	ACNGT	1 cut(s)	214
Bst6I	CTCTTC	1 cut(s)	246
BstAFI	CTTAAG	1 cut(s)	368
BstDEI	CTNAG	3 cut(s)	164, 420, 507
BstF5I	GGATG	2 cut(s)	30, 655
BstFNI	CGCG	1 cut(s)	77
BstNI	CCWGG	1 cut(s)	474
BstSCI	CCNGG	1 cut(s)	472
BstUI	CGCG	1 cut(s)	77
BstV1I	GCAGC	3 cut(s)	111, 218, 577
BstZ17I	GTATAC	1 cut(s)	87
Bsu36I	CCTNAGG	1 cut(s)	507
BsuRI	GGCC	2 cut(s)	162, 306
BtsCI	GGATG	2 cut(s)	30, 655
BtsI	GCAGTG	1 cut(s)	168
BtsIMutI	CAGTG	2 cut(s)	19, 168
CaiI	CAGNNNCTG	1 cut(s)	521
Cfr13I	GGNCC	1 cut(s)	160
Csp6I	GTAC	3 cut(s)	154, 512, 572
CviJI	RGCY	8 cut(s)	124, 162, 226, 306, 335, 496, 518, 590
CviKI_1	RGCY	8 cut(s)	124, 162, 226, 306, 335, 496, 518, 590
CviQI	GTAC	3 cut(s)	154, 512, 572
DdeI	CTNAG	3 cut(s)	164, 420, 507
EaeI	YGGCCR	1 cut(s)	304
Eam1104I	CTCTTC	1 cut(s)	246
EarI	CTCTTC	1 cut(s)	246
Eco130I	CCWWGG	1 cut(s)	660
Eco57I	CTGAAG	1 cut(s)	270
Eco81I	CCTNAGG	1 cut(s)	507
EcoO109I	RGGNCCY	1 cut(s)	160
EcoRII	CCWGG	1 cut(s)	472
EcoT14I	CCWWGG	1 cut(s)	660
EcoT22I	ATGCAT	1 cut(s)	630
ErhI	CCWWGG	1 cut(s)	660
FaiI	YATR	5 cut(s)	72, 87, 146, 347, 432
FalI	AAGNNNNNCTT	2 cut(s)	365, 397
FblI	GTMKAC	1 cut(s)	86
Fnu4HI	GCNGC	3 cut(s)	125, 207, 591
FokI	GGATG	2 cut(s)	37, 662
Fsp4HI	GCNGC	3 cut(s)	125, 207, 591
FspBI	CTAG	1 cut(s)	203
GluI	GCNGC	3 cut(s)	125, 207, 591
GsuI	CTGGAG	1 cut(s)	456
HaeIII	GGCC	2 cut(s)	162, 306
HapII	CCGG	1 cut(s)	307
HinfI	GANTC	4 cut(s)	16, 325, 404, 525
HpaII	CCGG	1 cut(s)	307
HphI	GGTGA	2 cut(s)	146, 495
Hpy166II	GTNNAC	1 cut(s)	87
Hpy188I	TCNGA	4 cut(s)	250, 330, 480, 532
Hpy188III	TCNNGA	1 cut(s)	620
Hpy8I	GTNNAC	1 cut(s)	87
HpyAV	CCTTC	2 cut(s)	431, 449
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4V	TGCA	5 cut(s)	10, 119, 341, 628, 653
HpyF3I	CTNAG	3 cut(s)	164, 420, 507
KpnI	GGTACC	1 cut(s)	515
LmnI	GCTCC	1 cut(s)	501
Lsp1109I	GCAGC	3 cut(s)	111, 218, 577
LweI	GCATC	5 cut(s)	21, 48, 375, 637, 640
MaeI	CTAG	1 cut(s)	203
MaeIII	GTNAC	2 cut(s)	415, 549
MboII	GAAGA	5 cut(s)	38, 149, 263, 350, 608
MluCI	AATT	1 cut(s)	671
MluI	ACGCGT	1 cut(s)	75
MlyI	GAGTC	3 cut(s)	10, 319, 519
MmeI	TCCRAC	1 cut(s)	357
MnlI	CCTC	5 cut(s)	91, 143, 173, 249, 516
Mph1103I	ATGCAT	1 cut(s)	630
MroXI	GAANNNNTTC	1 cut(s)	612
MseI	TTAA	2 cut(s)	369, 555
MspCI	CTTAAG	1 cut(s)	368
MspI	CCGG	1 cut(s)	307
MspR9I	CCNGG	1 cut(s)	474
MvaI	CCWGG	1 cut(s)	474
MvnI	CGCG	1 cut(s)	77
NlaIV	GGNNCC	3 cut(s)	240, 497, 513
NsiI	ATGCAT	1 cut(s)	630
PdmI	GAANNNNTTC	1 cut(s)	612
PfeI	GAWTC	1 cut(s)	404
PflMI	CCANNNNNTGG	1 cut(s)	521
PkrI	GCNGC	3 cut(s)	126, 208, 592
PleI	GAGTC	3 cut(s)	10, 319, 519
PpsI	GAGTC	3 cut(s)	10, 319, 519
PsiI	TTATAA	1 cut(s)	72
Psp6I	CCWGG	1 cut(s)	472
PspGI	CCWGG	1 cut(s)	472
PspN4I	GGNNCC	3 cut(s)	240, 497, 513
PspPI	GGNCC	1 cut(s)	160
PstNI	CAGNNNCTG	1 cut(s)	521
RsaI	GTAC	3 cut(s)	155, 513, 573
RsaNI	GTAC	3 cut(s)	154, 512, 572
SaqAI	TTAA	2 cut(s)	369, 555
SatI	GCNGC	3 cut(s)	125, 207, 591
Sau96I	GGNCC	1 cut(s)	160
SchI	GAGTC	3 cut(s)	10, 319, 519
ScrFI	CCNGG	1 cut(s)	474
SfaNI	GCATC	5 cut(s)	21, 48, 375, 637, 640
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	1 cut(s)	671
SspMI	CTAG	1 cut(s)	203
StyD4I	CCNGG	1 cut(s)	472
StyI	CCWWGG	1 cut(s)	660
TaaI	ACNGT	1 cut(s)	214
TasI	AATT	1 cut(s)	671
TfiI	GAWTC	1 cut(s)	404
Tru1I	TTAA	2 cut(s)	369, 555
Tru9I	TTAA	2 cut(s)	369, 555
TscAI	CASTG	2 cut(s)	26, 175
TseI	GCWGC	3 cut(s)	124, 206, 590
TspDTI	ATGAA	3 cut(s)	119, 396, 621
TspRI	CASTG	2 cut(s)	26, 175
Van91I	CCANNNNNTGG	1 cut(s)	521
Vha464I	CTTAAG	1 cut(s)	368
XapI	RAATTY	1 cut(s)	671
XmiI	GTMKAC	1 cut(s)	86
XmnI	GAANNNNTTC	1 cut(s)	612
XspI	CTAG	1 cut(s)	203
Zsp2I	ATGCAT	1 cut(s)	630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.