Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003201

Physical Location & Seq

Genomic Coordinates Forward (+)

59042815 .. 59052937

Gene Structure 10123 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG374200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGATGATGCTTCCACATGTTCGTCTAGCAAAGATGCTTTTGGGTTATAAAGCGTGGAAGTATACTGATGTGGAGGCAATGATAGAAAAGTTTGCAAAGCTGCTATTGGGTGAAGATATTACAAGAGGGTACAAGGGCCTCAGCACTGCTTTAGCATTGTCAAATGCCATCACAAATCTAGCAGCAACGGTTTTTGGAGAGCTATGGAAACTGGAACCACTATCTGAAGAGGGTAAAACAAAATGGCAAAGAGAAATGGACTGGTTACTCTCCCCTACCAACTATATGGTTGTGCTAGTTCCTTCCAGGCAAAATGGTGCTAATGGCCGGACAGTAGAGATTATGATTCCGAAAGCTCGTGCAGATATACACATCAATCTTCCAGCACTTAAGAAGTTGGACTCGATGCTTATTGAAACACTTGATTCAATGGTGGATACTAAGTTTGGGTATGTAGAAGGTGGTAGCAGGGCAGAAGGACGAAACAGAACTCCATGTCAGAGCAAGAGATGGTGGCTCCCATCACCTCAGGTACCAGCTACTGGACTCTTTGATACAGCAAAGAATAAGTTACTTAAACAGGGTAAGGTGGTACATCAAGTATTCAAGGCTGCCAGAACCATCAACGAAAGTGTTCTTCTTGAAATTCCTGTGCCAACCATTATCAGGGATGCACTTCCCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010769 GO:0010817 GO:0016020 GO:0016043 GO:0016049 GO:0016324 GO:0017016 GO:0017048 GO:0019899 GO:0022414 GO:0022603 GO:0022604 GO:0030154 GO:0031267 GO:0032092 GO:0032501 GO:0032502 GO:0032879 GO:0032989 GO:0040007 GO:0040008 GO:0043393 GO:0043900 GO:0044093 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0045595 GO:0048468 GO:0048518 GO:0048588 GO:0048589 GO:0048638 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051020 GO:0051049 GO:0051098 GO:0051099 GO:0051128 GO:0051239 GO:0051510 GO:0051704 GO:0060284 GO:0060560 GO:0065007 GO:0065008 GO:0065009 GO:0071840 GO:0071944 GO:0080092 GO:0098590 GO:0098772 GO:1904424 GO:1904426 GO:1904475 GO:1904477 GO:1905097 GO:1905099 GO:2000012 GO:2000241 GO:2001106 GO:2001108

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRONE

Protein Analysis

228

Amino Acids

25.6

Weight (kDa)

9.6

Isoelectric Point (pI)

42.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRONE	PF03759	23 - 228	2.4e-92	PRONE (Plant-specific Rop nucleotide exchanger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31650 AT1G31650
fragaria_vesca	FvH4_5g24650 FvH4_5g24650 FvH4_5g24650
malus_domestica	MD06G1012300.v1.1
prunus_persica	Prupe.5G015000_v2.0.a1 Prupe.5G015000_v2.0.a1 Prupe.5G015000_v2.0.a1 Prupe.5G015000_v2.0.a1
pyrus_communis	pycom06g01030
rosa_chinensis	RchiOBHm_Chr1g0348481 RchiOBHm_Chr3g0483451 RchiOBHm_Chr5g0060521 RchiOBHm_Chr7g0215031
rosa_laevigata	RLG00000002698 RLG00000022617
rosa_multiflora	Rmu_ssc0000134.1_g000066
rosa_roxburghii	Rroxscaffold_3G00244650
rosa_rugosa	Rorug03G0254500 Rorug07G0149700 Rorug07G0149700
rosa_samantha	Rh1AG253100 Rh3AG184200 Rh3AG254500 Rh4AG241100 Rh4CG255300 Rh5AG463000 Rh5BG374200 Rh5CG248600 Rh7AG170100 Rh7AG286600 Rh7BG278100 Rh7CG306000 Rh7DG290100
rosa_wichuraiana	Rw6G016450 Rw7G024440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	48
Acc65I	GGTACC	1 cut(s)	532
AccB1I	GGYRCC	1 cut(s)	532
AccB7I	CCANNNNNTGG	1 cut(s)	542
AccI	GTMKAC	1 cut(s)	62
AcoI	YGGCCR	1 cut(s)	325
AcsI	RAATTY	1 cut(s)	645
AcuI	CTGAAG	1 cut(s)	246
AfaI	GTAC	3 cut(s)	131, 534, 594
AfiI	CCNNNNNNNGG	2 cut(s)	542, 666
AflII	CTTAAG	1 cut(s)	389
AflIII	ACRYGT	1 cut(s)	16
AgsI	TTSAA	4 cut(s)	416, 429, 607, 644
AjnI	CCWGG	1 cut(s)	305
AluBI	AGCT	4 cut(s)	100, 202, 356, 539
AluI	AGCT	4 cut(s)	100, 202, 356, 539
AlwNI	CAGNNNCTG	1 cut(s)	542
AoxI	GGCC	2 cut(s)	136, 325
ApeKI	GCWGC	3 cut(s)	100, 182, 611
ApoI	RAATTY	1 cut(s)	645
Asp700I	GAANNNNTTC	1 cut(s)	633
Asp718I	GGTACC	1 cut(s)	532
AspS9I	GGNCC	1 cut(s)	136
AsuHPI	GGTGA	2 cut(s)	122, 516
AxyI	CCTNAGG	1 cut(s)	528
BanI	GGYRCC	1 cut(s)	532
BauI	CACGAG	1 cut(s)	357
BbvCI	CCTCAGC	1 cut(s)	140
BbvI	GCAGC	3 cut(s)	87, 194, 598
BccI	CCATC	4 cut(s)	176, 504, 529, 629
BciT130I	CCWGG	1 cut(s)	307
BciVI	GTATCC	1 cut(s)	430
BfaI	CTAG	3 cut(s)	26, 179, 296
BfrI	CTTAAG	1 cut(s)	389
BfuI	GTATCC	1 cut(s)	430
BisI	GCNGC	3 cut(s)	101, 183, 612
BlsI	GCNGC	3 cut(s)	102, 184, 613
Bme1390I	CCNGG	1 cut(s)	307
BmgT120I	GGNCC	1 cut(s)	136
BmiI	GGNNCC	3 cut(s)	216, 518, 534
BmrFI	CCNGG	1 cut(s)	307
BmsI	GCATC	3 cut(s)	24, 396, 661
Bpu10I	CCTNAGC	1 cut(s)	140
Bsc4I	CCNNNNNNNGG	2 cut(s)	542, 666
Bse1I	ACTGG	3 cut(s)	216, 266, 547
Bse21I	CCTNAGG	1 cut(s)	528
Bse3DI	GCAATG	1 cut(s)	84
BseBI	CCWGG	1 cut(s)	307
BseGI	GGATG	1 cut(s)	676
BseLI	CCNNNNNNNGG	2 cut(s)	542, 666
BseMI	GCAATG	1 cut(s)	84
BseMII	CTCAG	2 cut(s)	154, 542
BseNI	ACTGG	3 cut(s)	216, 266, 547
BseXI	GCAGC	3 cut(s)	87, 194, 598
BsgI	GTGCAG	1 cut(s)	381
BshFI	GGCC	2 cut(s)	138, 327
BshNI	GGYRCC	1 cut(s)	532
BsiSI	CCGG	1 cut(s)	328
BslI	CCNNNNNNNGG	2 cut(s)	542, 666
BsnI	GGCC	2 cut(s)	138, 327
BspANI	GGCC	2 cut(s)	138, 327
BspCNI	CTCAG	2 cut(s)	153, 541
BspLI	GGNNCC	3 cut(s)	216, 518, 534
BspT107I	GGYRCC	1 cut(s)	532
BspTI	CTTAAG	1 cut(s)	389
BsrDI	GCAATG	1 cut(s)	84
BsrI	ACTGG	3 cut(s)	216, 266, 547
BssNAI	GTATAC	1 cut(s)	63
BssSI	CACGAG	1 cut(s)	357
Bst1107I	GTATAC	1 cut(s)	63
Bst2BI	CACGAG	1 cut(s)	357
Bst2UI	CCWGG	1 cut(s)	307
Bst4CI	ACNGT	2 cut(s)	190, 334
Bst6I	CTCTTC	1 cut(s)	222
BstAFI	CTTAAG	1 cut(s)	389
BstDEI	CTNAG	3 cut(s)	140, 441, 528
BstF5I	GGATG	1 cut(s)	676
BstNI	CCWGG	1 cut(s)	307
BstNSI	RCATGY	1 cut(s)	20
BstSCI	CCNGG	1 cut(s)	305
BstV1I	GCAGC	3 cut(s)	87, 194, 598
BstXI	CCANNNNNNTGG	1 cut(s)	286
BstZ17I	GTATAC	1 cut(s)	63
Bsu36I	CCTNAGG	1 cut(s)	528
BsuI	GTATCC	1 cut(s)	430
BsuRI	GGCC	2 cut(s)	138, 327
BtsCI	GGATG	1 cut(s)	676
BtsI	GCAGTG	1 cut(s)	144
BtsIMutI	CAGTG	1 cut(s)	144
CaiI	CAGNNNCTG	1 cut(s)	542
Cfr13I	GGNCC	1 cut(s)	136
Csp6I	GTAC	3 cut(s)	130, 533, 593
CviAII	CATG	2 cut(s)	17, 495
CviJI	RGCY	8 cut(s)	100, 138, 202, 327, 356, 517, 539, 611
CviKI_1	RGCY	8 cut(s)	100, 138, 202, 327, 356, 517, 539, 611
CviQI	GTAC	3 cut(s)	130, 533, 593
DdeI	CTNAG	3 cut(s)	140, 441, 528
EaeI	YGGCCR	1 cut(s)	325
Eam1104I	CTCTTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	222
Eco57I	CTGAAG	1 cut(s)	246
Eco81I	CCTNAGG	1 cut(s)	528
EcoO109I	RGGNCCY	1 cut(s)	136
EcoRII	CCWGG	1 cut(s)	305
FaeI	CATG	2 cut(s)	20, 498
FatI	CATG	2 cut(s)	16, 494
FblI	GTMKAC	1 cut(s)	62
Fnu4HI	GCNGC	3 cut(s)	101, 183, 612
FokI	GGATG	1 cut(s)	683
Fsp4HI	GCNGC	3 cut(s)	101, 183, 612
FspBI	CTAG	3 cut(s)	26, 179, 296
GluI	GCNGC	3 cut(s)	101, 183, 612
HaeIII	GGCC	2 cut(s)	138, 327
HapII	CCGG	1 cut(s)	328
Hin1II	CATG	2 cut(s)	20, 498
HinfI	GANTC	4 cut(s)	346, 401, 425, 546
HpaII	CCGG	1 cut(s)	328
HphI	GGTGA	2 cut(s)	122, 516
Hpy166II	GTNNAC	1 cut(s)	63
Hpy188I	TCNGA	3 cut(s)	226, 351, 501
Hpy188III	TCNNGA	1 cut(s)	641
Hpy8I	GTNNAC	1 cut(s)	63
HpyAV	CCTTC	3 cut(s)	312, 452, 470
HpyCH4III	ACNGT	2 cut(s)	190, 334
HpyCH4V	TGCA	3 cut(s)	95, 362, 674
HpyF3I	CTNAG	3 cut(s)	140, 441, 528
Hsp92II	CATG	2 cut(s)	20, 498
KpnI	GGTACC	1 cut(s)	536
LmnI	GCTCC	1 cut(s)	522
Lsp1109I	GCAGC	3 cut(s)	87, 194, 598
LweI	GCATC	3 cut(s)	24, 396, 661
MaeI	CTAG	3 cut(s)	26, 179, 296
MaeIII	GTNAC	2 cut(s)	264, 570
MboII	GAAGA	4 cut(s)	125, 239, 371, 629
MluCI	AATT	1 cut(s)	645
MlyI	GAGTC	2 cut(s)	395, 540
MmeI	TCCRAC	1 cut(s)	378
MnlI	CCTC	5 cut(s)	67, 119, 149, 223, 537
MroXI	GAANNNNTTC	1 cut(s)	633
MseI	TTAA	2 cut(s)	390, 576
MspCI	CTTAAG	1 cut(s)	389
MspI	CCGG	1 cut(s)	328
MspR9I	CCNGG	1 cut(s)	307
MvaI	CCWGG	1 cut(s)	307
NlaIII	CATG	2 cut(s)	20, 498
NlaIV	GGNNCC	3 cut(s)	216, 518, 534
NspI	RCATGY	1 cut(s)	20
PciI	ACATGT	1 cut(s)	16
PdmI	GAANNNNTTC	1 cut(s)	633
PfeI	GAWTC	2 cut(s)	346, 425
PflMI	CCANNNNNTGG	1 cut(s)	542
PkrI	GCNGC	3 cut(s)	102, 184, 613
PleI	GAGTC	2 cut(s)	395, 540
PpsI	GAGTC	2 cut(s)	395, 540
PscI	ACATGT	1 cut(s)	16
PsiI	TTATAA	1 cut(s)	48
Psp6I	CCWGG	1 cut(s)	305
PspGI	CCWGG	1 cut(s)	305
PspN4I	GGNNCC	3 cut(s)	216, 518, 534
PspPI	GGNCC	1 cut(s)	136
PstNI	CAGNNNCTG	1 cut(s)	542
RsaI	GTAC	3 cut(s)	131, 534, 594
RsaNI	GTAC	3 cut(s)	130, 533, 593
SaqAI	TTAA	2 cut(s)	390, 576
SatI	GCNGC	3 cut(s)	101, 183, 612
Sau96I	GGNCC	1 cut(s)	136
SchI	GAGTC	2 cut(s)	395, 540
ScrFI	CCNGG	1 cut(s)	307
SetI	ASST	8 cut(s)	102, 204, 358, 463, 529, 534, 541, 591
SfaNI	GCATC	3 cut(s)	24, 396, 661
SmlI	CTYRAG	1 cut(s)	389
SmoI	CTYRAG	1 cut(s)	389
Sse9I	AATT	1 cut(s)	645
SspMI	CTAG	3 cut(s)	26, 179, 296
StyD4I	CCNGG	1 cut(s)	305
TaaI	ACNGT	2 cut(s)	190, 334
TaqI	TCGA	1 cut(s)	404
TasI	AATT	1 cut(s)	645
TfiI	GAWTC	2 cut(s)	346, 425
Tru1I	TTAA	2 cut(s)	390, 576
Tru9I	TTAA	2 cut(s)	390, 576
TscAI	CASTG	1 cut(s)	151
TseI	GCWGC	3 cut(s)	100, 182, 611
TspRI	CASTG	1 cut(s)	151
Van91I	CCANNNNNTGG	1 cut(s)	542
Vha464I	CTTAAG	1 cut(s)	389
XapI	RAATTY	1 cut(s)	645
XceI	RCATGY	1 cut(s)	20
XmiI	GTMKAC	1 cut(s)	62
XmnI	GAANNNNTTC	1 cut(s)	633
XspI	CTAG	3 cut(s)	26, 179, 296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.