Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0003201

Physical Location & Seq

Genomic Coordinates Reverse (-)

26123824 .. 26124518

Gene Structure 695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG248600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGATTCCGAAAGCTCGTGCAGATATACACATCAATCTTCCAGCACTTAAGAAGTTGGACTCGATGCTTATTGAAACACTTGATTCAATGGTGGATACTGAGTTTGGGTATGTAGAAGGTGGTAGCAGGGCAGAAGGACGAAACAGAACTCCAGGTCAGAGCAAGAGATGGTGGCTCCCATCACCTCAGGTACCAGCTACTGGATTCTGGATCTGTCTGTTAAGC

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010769 GO:0010817 GO:0016020 GO:0016043 GO:0016049 GO:0016324 GO:0017016 GO:0017048 GO:0019899 GO:0022414 GO:0022603 GO:0022604 GO:0030154 GO:0031267 GO:0032092 GO:0032501 GO:0032502 GO:0032879 GO:0032989 GO:0040007 GO:0040008 GO:0043393 GO:0043900 GO:0044093 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0045595 GO:0048468 GO:0048518 GO:0048588 GO:0048589 GO:0048638 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051020 GO:0051049 GO:0051098 GO:0051099 GO:0051128 GO:0051239 GO:0051510 GO:0051704 GO:0060284 GO:0060560 GO:0065007 GO:0065008 GO:0065009 GO:0071840 GO:0071944 GO:0080092 GO:0098590 GO:0098772 GO:1904424 GO:1904426 GO:1904475 GO:1904477 GO:1905097 GO:1905099 GO:2000012 GO:2000241 GO:2001106 GO:2001108

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRONE

Protein Analysis

75

Amino Acids

8.4

Weight (kDa)

7.92

Isoelectric Point (pI)

71.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRONE	PF03759	1 - 69	9.3e-26	PRONE (Plant-specific Rop nucleotide exchanger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31650 AT1G31650
fragaria_vesca	FvH4_5g24650 FvH4_5g24650 FvH4_5g24650
malus_domestica	MD06G1012300.v1.1
prunus_persica	Prupe.5G015000_v2.0.a1 Prupe.5G015000_v2.0.a1 Prupe.5G015000_v2.0.a1 Prupe.5G015000_v2.0.a1
pyrus_communis	pycom06g01030
rosa_chinensis	RchiOBHm_Chr1g0348481 RchiOBHm_Chr3g0483451 RchiOBHm_Chr5g0060521 RchiOBHm_Chr7g0215031
rosa_laevigata	RLG00000002698 RLG00000022617
rosa_multiflora	Rmu_ssc0000134.1_g000066
rosa_roxburghii	Rroxscaffold_3G00244650
rosa_rugosa	Rorug03G0254500 Rorug07G0149700 Rorug07G0149700
rosa_samantha	Rh1AG253100 Rh3AG184200 Rh3AG254500 Rh4AG241100 Rh4CG255300 Rh5AG463000 Rh5BG374200 Rh5CG248600 Rh7AG170100 Rh7AG286600 Rh7BG278100 Rh7CG306000 Rh7DG290100
rosa_wichuraiana	Rw6G016450 Rw7G024440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	190
AccB1I	GGYRCC	1 cut(s)	190
AccB7I	CCANNNNNTGG	1 cut(s)	200
AclWI	GGATC	1 cut(s)	218
AfaI	GTAC	1 cut(s)	192
AfiI	CCNNNNNNNGG	1 cut(s)	200
AflII	CTTAAG	1 cut(s)	47
AgsI	TTSAA	2 cut(s)	74, 87
AjnI	CCWGG	1 cut(s)	151
AluBI	AGCT	2 cut(s)	14, 197
AluI	AGCT	2 cut(s)	14, 197
AlwI	GGATC	1 cut(s)	218
AlwNI	CAGNNNCTG	1 cut(s)	200
Asp718I	GGTACC	1 cut(s)	190
AsuHPI	GGTGA	1 cut(s)	174
AxyI	CCTNAGG	1 cut(s)	186
BanI	GGYRCC	1 cut(s)	190
BauI	CACGAG	1 cut(s)	15
BccI	CCATC	2 cut(s)	162, 187
BciT130I	CCWGG	1 cut(s)	153
BciVI	GTATCC	1 cut(s)	88
BfrI	CTTAAG	1 cut(s)	47
BfuI	GTATCC	1 cut(s)	88
Bme1390I	CCNGG	1 cut(s)	153
BmiI	GGNNCC	2 cut(s)	176, 192
BmrFI	CCNGG	1 cut(s)	153
BmsI	GCATC	1 cut(s)	54
BpmI	CTGGAG	1 cut(s)	135
Bsc4I	CCNNNNNNNGG	1 cut(s)	200
Bse1I	ACTGG	1 cut(s)	205
Bse21I	CCTNAGG	1 cut(s)	186
BseBI	CCWGG	1 cut(s)	153
BseLI	CCNNNNNNNGG	1 cut(s)	200
BseMII	CTCAG	2 cut(s)	90, 200
BseNI	ACTGG	1 cut(s)	205
BsgI	GTGCAG	1 cut(s)	39
BshNI	GGYRCC	1 cut(s)	190
BslI	CCNNNNNNNGG	1 cut(s)	200
Bsp143I	GATC	1 cut(s)	210
BspCNI	CTCAG	2 cut(s)	91, 199
BspLI	GGNNCC	2 cut(s)	176, 192
BspPI	GGATC	1 cut(s)	218
BspT107I	GGYRCC	1 cut(s)	190
BspTI	CTTAAG	1 cut(s)	47
BsrI	ACTGG	1 cut(s)	205
BssMI	GATC	1 cut(s)	210
BssSI	CACGAG	1 cut(s)	15
Bst2BI	CACGAG	1 cut(s)	15
Bst2UI	CCWGG	1 cut(s)	153
BstAFI	CTTAAG	1 cut(s)	47
BstDEI	CTNAG	2 cut(s)	99, 186
BstKTI	GATC	1 cut(s)	213
BstMBI	GATC	1 cut(s)	210
BstNI	CCWGG	1 cut(s)	153
BstSCI	CCNGG	1 cut(s)	151
BstX2I	RGATCY	1 cut(s)	210
BstYI	RGATCY	1 cut(s)	210
Bsu36I	CCTNAGG	1 cut(s)	186
BsuI	GTATCC	1 cut(s)	88
CaiI	CAGNNNCTG	1 cut(s)	200
Csp6I	GTAC	1 cut(s)	191
CviJI	RGCY	3 cut(s)	14, 175, 197
CviKI_1	RGCY	3 cut(s)	14, 175, 197
CviQI	GTAC	1 cut(s)	191
DdeI	CTNAG	2 cut(s)	99, 186
DpnI	GATC	1 cut(s)	212
DpnII	GATC	1 cut(s)	210
Eco81I	CCTNAGG	1 cut(s)	186
EcoRII	CCWGG	1 cut(s)	151
FaiI	YATR	2 cut(s)	26, 111
GsuI	CTGGAG	1 cut(s)	135
HinfI	GANTC	4 cut(s)	4, 59, 83, 204
HphI	GGTGA	1 cut(s)	174
Hpy188I	TCNGA	2 cut(s)	9, 159
Hpy188III	TCNNGA	1 cut(s)	208
HpyAV	CCTTC	2 cut(s)	110, 128
HpyCH4V	TGCA	1 cut(s)	20
HpyF3I	CTNAG	2 cut(s)	99, 186
KpnI	GGTACC	1 cut(s)	194
Kzo9I	GATC	1 cut(s)	210
LmnI	GCTCC	1 cut(s)	180
LpnPI	CCDG	8 cut(s)	54, 112, 138, 165, 173, 186, 193, 207
LweI	GCATC	1 cut(s)	54
MalI	GATC	1 cut(s)	212
MboI	GATC	1 cut(s)	210
MboII	GAAGA	1 cut(s)	29
MflI	RGATCY	1 cut(s)	210
MlyI	GAGTC	1 cut(s)	53
MmeI	TCCRAC	1 cut(s)	36
MnlI	CCTC	1 cut(s)	195
MseI	TTAA	2 cut(s)	48, 221
MspCI	CTTAAG	1 cut(s)	47
MspR9I	CCNGG	1 cut(s)	153
MvaI	CCWGG	1 cut(s)	153
NdeII	GATC	1 cut(s)	210
NlaIV	GGNNCC	2 cut(s)	176, 192
PfeI	GAWTC	3 cut(s)	4, 83, 204
PflMI	CCANNNNNTGG	1 cut(s)	200
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
Psp6I	CCWGG	1 cut(s)	151
PspGI	CCWGG	1 cut(s)	151
PspN4I	GGNNCC	2 cut(s)	176, 192
PstNI	CAGNNNCTG	1 cut(s)	200
PsuI	RGATCY	1 cut(s)	210
RsaI	GTAC	1 cut(s)	192
RsaNI	GTAC	1 cut(s)	191
SaqAI	TTAA	2 cut(s)	48, 221
Sau3AI	GATC	1 cut(s)	210
SchI	GAGTC	1 cut(s)	53
ScrFI	CCNGG	1 cut(s)	153
SetI	ASST	6 cut(s)	16, 121, 157, 187, 192, 199
SfaNI	GCATC	1 cut(s)	54
SmlI	CTYRAG	1 cut(s)	47
SmoI	CTYRAG	1 cut(s)	47
StyD4I	CCNGG	1 cut(s)	151
TaqI	TCGA	1 cut(s)	62
TfiI	GAWTC	3 cut(s)	4, 83, 204
Tru1I	TTAA	2 cut(s)	48, 221
Tru9I	TTAA	2 cut(s)	48, 221
Van91I	CCANNNNNTGG	1 cut(s)	200
Vha464I	CTTAAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.