Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0003201

Physical Location & Seq

Genomic Coordinates Reverse (-)

46907555 .. 46930666

Gene Structure 23112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG253100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGTTCTCACGACTAAGCTTTGCCGCTTCAGTGGTGCCAAGATCTACCCTGGTAGGGGCATCAGATTCATCCACTCCGATTCTCAGGTTTCCCTGTTCATAAATTCCAAGTGCAAGAGGTACTTTAATAACCGCCTCAAGCCATCCAAGATCACCTGGACTGCCATGTTCAGAAAGCAGCACAAGAAGGTTGAATGGCAAAATGGTGCTAATGGCCGGACAGTAGAGATTATGATTCCGAAAGCTCGTGCAGATATACACATCAATCTTCCAGCACTTAAGAAGTTGGACTCGATGCTTATTGAAACACTTGATTCAATGGTGGATACTGAGTTTGGGTATGTAGAAGGTGGTAGCAGGGCAGAAGGACGAAACAGAACTCCAGGTCAGAGCAAGAGATGGTGGCTCCCATCGATCACCTCAGGAGTAACAGACGGAAAGACTTCTTACTCAGCAGGAAGAAAAGTTCAGCGAGGCTTTGGAGGTTTGAGCTTGAATGCTCAGCGGCTAGTTCGTAACAACAACGATAAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010769 GO:0010817 GO:0016020 GO:0016043 GO:0016049 GO:0016324 GO:0017016 GO:0017048 GO:0019899 GO:0022414 GO:0022603 GO:0022604 GO:0030154 GO:0031267 GO:0032092 GO:0032501 GO:0032502 GO:0032879 GO:0032989 GO:0040007 GO:0040008 GO:0043393 GO:0043900 GO:0044093 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0045595 GO:0048468 GO:0048518 GO:0048588 GO:0048589 GO:0048638 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051020 GO:0051049 GO:0051098 GO:0051099 GO:0051128 GO:0051239 GO:0051510 GO:0051704 GO:0060284 GO:0060560 GO:0065007 GO:0065008 GO:0065009 GO:0071840 GO:0071944 GO:0080092 GO:0098590 GO:0098772 GO:1904424 GO:1904426 GO:1904475 GO:1904477 GO:1905097 GO:1905099 GO:2000012 GO:2000241 GO:2001106 GO:2001108

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRONE

Protein Analysis

178

Amino Acids

20.15

Weight (kDa)

10.44

Isoelectric Point (pI)

29.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L24e	PF01246	5 - 65	1.4e-24	Ribosomal protein L24e
PRONE	PF03759	65 - 140	1.1e-26	PRONE (Plant-specific Rop nucleotide exchanger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31650 AT1G31650
fragaria_vesca	FvH4_5g24650 FvH4_5g24650 FvH4_5g24650
malus_domestica	MD06G1012300.v1.1
prunus_persica	Prupe.5G015000_v2.0.a1 Prupe.5G015000_v2.0.a1 Prupe.5G015000_v2.0.a1 Prupe.5G015000_v2.0.a1
pyrus_communis	pycom06g01030
rosa_chinensis	RchiOBHm_Chr1g0348481 RchiOBHm_Chr3g0483451 RchiOBHm_Chr5g0060521 RchiOBHm_Chr7g0215031
rosa_laevigata	RLG00000002698 RLG00000022617
rosa_multiflora	Rmu_ssc0000134.1_g000066
rosa_roxburghii	Rroxscaffold_3G00244650
rosa_rugosa	Rorug03G0254500 Rorug07G0149700 Rorug07G0149700
rosa_samantha	Rh1AG253100 Rh3AG184200 Rh3AG254500 Rh4AG241100 Rh4CG255300 Rh5AG463000 Rh5BG374200 Rh5CG248600 Rh7AG170100 Rh7AG286600 Rh7BG278100 Rh7CG306000 Rh7DG290100
rosa_wichuraiana	Rw6G016450 Rw7G024440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	35
AciI	CCGC	3 cut(s)	25, 133, 505
AcoI	YGGCCR	1 cut(s)	214
AcsI	RAATTY	1 cut(s)	103
AcuI	CTGAAG	1 cut(s)	13
AfaI	GTAC	1 cut(s)	122
AfiI	CCNNNNNNNGG	2 cut(s)	55, 56
AflII	CTTAAG	1 cut(s)	278
AgsI	TTSAA	4 cut(s)	194, 305, 318, 496
AjnI	CCWGG	3 cut(s)	49, 155, 382
AloI	GAACNNNNNNTCC	2 cut(s)	450, 482
AluBI	AGCT	3 cut(s)	19, 245, 492
AluI	AGCT	3 cut(s)	19, 245, 492
AoxI	GGCC	1 cut(s)	214
ApeKI	GCWGC	1 cut(s)	178
ApoI	RAATTY	1 cut(s)	103
Asp700I	GAANNNNTTC	1 cut(s)	442
AsuHPI	GGTGA	2 cut(s)	145, 409
AxyI	CCTNAGG	1 cut(s)	421
BanI	GGYRCC	1 cut(s)	35
BauI	CACGAG	1 cut(s)	246
BbvI	GCAGC	1 cut(s)	190
BccI	CCATC	3 cut(s)	151, 393, 418
BciT130I	CCWGG	3 cut(s)	51, 157, 384
BciVI	GTATCC	1 cut(s)	319
BfaI	CTAG	1 cut(s)	509
BfrI	CTTAAG	1 cut(s)	278
BfuI	GTATCC	1 cut(s)	319
BglII	AGATCT	1 cut(s)	42
BisI	GCNGC	3 cut(s)	25, 179, 506
BlpI	GCTNAGC	1 cut(s)	501
BlsI	GCNGC	3 cut(s)	26, 180, 507
Bme1390I	CCNGG	3 cut(s)	51, 157, 384
BmiI	GGNNCC	2 cut(s)	37, 407
BmrFI	CCNGG	3 cut(s)	51, 157, 384
BmsI	GCATC	2 cut(s)	69, 285
BpmI	CTGGAG	1 cut(s)	366
Bpu1102I	GCTNAGC	1 cut(s)	501
BpuEI	CTTGAG	1 cut(s)	122
Bsa29I	ATCGAT	1 cut(s)	413
BsaJI	CCNNGG	1 cut(s)	49
Bsc4I	CCNNNNNNNGG	2 cut(s)	55, 56
Bse21I	CCTNAGG	1 cut(s)	421
BseBI	CCWGG	3 cut(s)	51, 157, 384
BseCI	ATCGAT	1 cut(s)	413
BseDI	CCNNGG	1 cut(s)	49
BseGI	GGATG	2 cut(s)	69, 143
BseLI	CCNNNNNNNGG	2 cut(s)	55, 56
BseMII	CTCAG	5 cut(s)	98, 321, 435, 465, 515
BseXI	GCAGC	1 cut(s)	190
BsgI	GTGCAG	1 cut(s)	270
BshFI	GGCC	1 cut(s)	216
BshNI	GGYRCC	1 cut(s)	35
BshVI	ATCGAT	1 cut(s)	413
BsiSI	CCGG	1 cut(s)	217
BslI	CCNNNNNNNGG	2 cut(s)	55, 56
BsmI	GAATGC	1 cut(s)	502
BsnI	GGCC	1 cut(s)	216
Bsp143I	GATC	3 cut(s)	42, 150, 414
Bsp1720I	GCTNAGC	1 cut(s)	501
BspACI	CCGC	3 cut(s)	25, 133, 505
BspANI	GGCC	1 cut(s)	216
BspCNI	CTCAG	5 cut(s)	97, 322, 434, 464, 514
BspDI	ATCGAT	1 cut(s)	413
BspLI	GGNNCC	2 cut(s)	37, 407
BspT107I	GGYRCC	1 cut(s)	35
BspTI	CTTAAG	1 cut(s)	278
BssECI	CCNNGG	1 cut(s)	49
BssMI	GATC	3 cut(s)	42, 150, 414
BssSI	CACGAG	1 cut(s)	246
Bst2BI	CACGAG	1 cut(s)	246
Bst2UI	CCWGG	3 cut(s)	51, 157, 384
Bst4CI	ACNGT	1 cut(s)	223
BstAFI	CTTAAG	1 cut(s)	278
BstDEI	CTNAG	6 cut(s)	15, 84, 330, 421, 451, 501
BstF5I	GGATG	2 cut(s)	69, 143
BstKTI	GATC	3 cut(s)	45, 153, 417
BstMBI	GATC	3 cut(s)	42, 150, 414
BstNI	CCWGG	3 cut(s)	51, 157, 384
BstSCI	CCNGG	3 cut(s)	49, 155, 382
BstV1I	GCAGC	1 cut(s)	190
BstX2I	RGATCY	1 cut(s)	42
BstYI	RGATCY	1 cut(s)	42
Bsu15I	ATCGAT	1 cut(s)	413
Bsu36I	CCTNAGG	1 cut(s)	421
BsuI	GTATCC	1 cut(s)	319
BsuRI	GGCC	1 cut(s)	216
BsuTUI	ATCGAT	1 cut(s)	413
BtsCI	GGATG	2 cut(s)	69, 143
BtsIMutI	CAGTG	1 cut(s)	37
ClaI	ATCGAT	1 cut(s)	413
Csp6I	GTAC	1 cut(s)	121
CviAII	CATG	1 cut(s)	166
CviJI	RGCY	8 cut(s)	19, 142, 216, 245, 406, 477, 492, 508
CviKI_1	RGCY	8 cut(s)	19, 142, 216, 245, 406, 477, 492, 508
CviQI	GTAC	1 cut(s)	121
DdeI	CTNAG	6 cut(s)	15, 84, 330, 421, 451, 501
DpnI	GATC	3 cut(s)	44, 152, 416
DpnII	GATC	3 cut(s)	42, 150, 414
EaeI	YGGCCR	1 cut(s)	214
Eco57I	CTGAAG	1 cut(s)	13
Eco81I	CCTNAGG	1 cut(s)	421
EcoRII	CCWGG	3 cut(s)	49, 155, 382
FaeI	CATG	1 cut(s)	169
FaiI	YATR	5 cut(s)	101, 167, 233, 257, 342
FalI	AAGNNNNNCTT	2 cut(s)	107, 139
FatI	CATG	1 cut(s)	165
Fnu4HI	GCNGC	3 cut(s)	25, 179, 506
FokI	GGATG	2 cut(s)	56, 130
Fsp4HI	GCNGC	3 cut(s)	25, 179, 506
FspBI	CTAG	1 cut(s)	509
GluI	GCNGC	3 cut(s)	25, 179, 506
GsuI	CTGGAG	1 cut(s)	366
HaeIII	GGCC	1 cut(s)	216
HapII	CCGG	1 cut(s)	217
Hin1II	CATG	1 cut(s)	169
HindIII	AAGCTT	1 cut(s)	17
HinfI	GANTC	5 cut(s)	66, 80, 235, 290, 314
HpaII	CCGG	1 cut(s)	217
HphI	GGTGA	2 cut(s)	145, 409
Hpy188I	TCNGA	5 cut(s)	65, 79, 173, 240, 390
Hpy188III	TCNNGA	2 cut(s)	10, 423
HpyAV	CCTTC	3 cut(s)	181, 341, 359
HpyCH4III	ACNGT	1 cut(s)	223
HpyCH4V	TGCA	2 cut(s)	114, 251
HpyF3I	CTNAG	6 cut(s)	15, 84, 330, 421, 451, 501
Hsp92II	CATG	1 cut(s)	169
Kzo9I	GATC	3 cut(s)	42, 150, 414
LmnI	GCTCC	1 cut(s)	411
Lsp1109I	GCAGC	1 cut(s)	190
LweI	GCATC	2 cut(s)	69, 285
MaeI	CTAG	1 cut(s)	509
MaeIII	GTNAC	2 cut(s)	427, 515
MalI	GATC	3 cut(s)	44, 152, 416
MboI	GATC	3 cut(s)	42, 150, 414
MboII	GAAGA	2 cut(s)	260, 471
MflI	RGATCY	1 cut(s)	42
MluCI	AATT	1 cut(s)	103
MlyI	GAGTC	1 cut(s)	284
MmeI	TCCRAC	1 cut(s)	267
MnlI	CCTC	5 cut(s)	111, 146, 430, 467, 476
MroXI	GAANNNNTTC	1 cut(s)	442
MseI	TTAA	3 cut(s)	126, 279, 535
MspA1I	CMGCKG	1 cut(s)	505
MspCI	CTTAAG	1 cut(s)	278
MspI	CCGG	1 cut(s)	217
MspR9I	CCNGG	3 cut(s)	51, 157, 384
Mva1269I	GAATGC	1 cut(s)	502
MvaI	CCWGG	3 cut(s)	51, 157, 384
NdeII	GATC	3 cut(s)	42, 150, 414
NlaIII	CATG	1 cut(s)	169
NlaIV	GGNNCC	2 cut(s)	37, 407
PctI	GAATGC	1 cut(s)	502
PdmI	GAANNNNTTC	1 cut(s)	442
PfeI	GAWTC	4 cut(s)	66, 80, 235, 314
PkrI	GCNGC	3 cut(s)	26, 180, 507
PleI	GAGTC	1 cut(s)	284
PpsI	GAGTC	1 cut(s)	284
Psp6I	CCWGG	3 cut(s)	49, 155, 382
PspGI	CCWGG	3 cut(s)	49, 155, 382
PspN4I	GGNNCC	2 cut(s)	37, 407
PsuI	RGATCY	1 cut(s)	42
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
SaqAI	TTAA	3 cut(s)	126, 279, 535
SatI	GCNGC	3 cut(s)	25, 179, 506
Sau3AI	GATC	3 cut(s)	42, 150, 414
SchI	GAGTC	1 cut(s)	284
ScrFI	CCNGG	3 cut(s)	51, 157, 384
SfaNI	GCATC	2 cut(s)	69, 285
SmlI	CTYRAG	2 cut(s)	137, 278
SmoI	CTYRAG	2 cut(s)	137, 278
Sse9I	AATT	1 cut(s)	103
SsiI	CCGC	3 cut(s)	25, 133, 505
SspMI	CTAG	1 cut(s)	509
StyD4I	CCNGG	3 cut(s)	49, 155, 382
TaaI	ACNGT	1 cut(s)	223
TaqI	TCGA	2 cut(s)	293, 413
TasI	AATT	1 cut(s)	103
TauI	GCSGC	2 cut(s)	27, 508
TfiI	GAWTC	4 cut(s)	66, 80, 235, 314
Tru1I	TTAA	3 cut(s)	126, 279, 535
Tru9I	TTAA	3 cut(s)	126, 279, 535
TscAI	CASTG	1 cut(s)	37
TseI	GCWGC	1 cut(s)	178
TspDTI	ATGAA	2 cut(s)	58, 88
TspGWI	ACGGA	1 cut(s)	450
TspRI	CASTG	1 cut(s)	37
Vha464I	CTTAAG	1 cut(s)	278
XapI	RAATTY	1 cut(s)	103
XmnI	GAANNNNTTC	1 cut(s)	442
XspI	CTAG	1 cut(s)	509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.