Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0003201

Physical Location & Seq

Genomic Coordinates Forward (+)

5423047 .. 5424114

Gene Structure 1068 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022617

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGCTTTTGGGTCATAACGCCTGGAAGTATACAGATGTGGAGGCAATGAAAGAAAAGTTTGCAAAGCTGCTATTGGCAACGGTTTTTGGAGAGCTGTGGAAACTGGAACCACTATCTGAAGAGAGGAAAACAAAATGGCAAAGAGAAATGGACTGGTTACTCTCCCCTACCAACTATATGGTTGAGCTAGTTCCTTCCAGGCAAAATGGTGCTAATGGCCGGACAGTAGAGATTATGACTCCGAAAGCTCGTGCAGACATACACATCAATCTTCCAGCACTTAAGAAGTTGGACTCGATGCTTATTGAAACACTTGATTCAATGGTGGATACTGAGTTTGGGTATGTAGAAGGTGGTAGCAGGGCAGAAGGACGAAACAGAACTCCAGGTCAGAGCAAGAGATGGTGGCTCCCATCACCTCAGGTACTAGCTACTGGACTCTCTGATACAGCAAAGAATAAGTTACTTAAACAGGGTAAGGTGGTACATCAAGTCTTCAAGGCTGCCAGAACCATCAACGAAAGTGTTCTTCTTGAATTGCCTGTGCCAACCATTATCAGGGATGCACTTCCCAAGGTAGTGAAATTTTTTCCGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010769 GO:0010817 GO:0016020 GO:0016043 GO:0016049 GO:0016324 GO:0017016 GO:0017048 GO:0019899 GO:0022414 GO:0022603 GO:0022604 GO:0030154 GO:0031267 GO:0032092 GO:0032501 GO:0032502 GO:0032879 GO:0032989 GO:0040007 GO:0040008 GO:0043393 GO:0043900 GO:0044093 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0045595 GO:0048468 GO:0048518 GO:0048588 GO:0048589 GO:0048638 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051020 GO:0051049 GO:0051098 GO:0051099 GO:0051128 GO:0051239 GO:0051510 GO:0051704 GO:0060284 GO:0060560 GO:0065007 GO:0065008 GO:0065009 GO:0071840 GO:0071944 GO:0080092 GO:0098590 GO:0098772 GO:1904424 GO:1904426 GO:1904475 GO:1904477 GO:1905097 GO:1905099 GO:2000012 GO:2000241 GO:2001106 GO:2001108

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRONE

Protein Analysis

200

Amino Acids

22.58

Weight (kDa)

9.49

Isoelectric Point (pI)

46.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRONE	PF03759	24 - 195	1.6e-74	PRONE (Plant-specific Rop nucleotide exchanger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0003201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31650 AT1G31650
fragaria_vesca	FvH4_5g24650 FvH4_5g24650 FvH4_5g24650
malus_domestica	MD06G1012300.v1.1
prunus_persica	Prupe.5G015000_v2.0.a1 Prupe.5G015000_v2.0.a1 Prupe.5G015000_v2.0.a1 Prupe.5G015000_v2.0.a1
pyrus_communis	pycom06g01030
rosa_chinensis	RchiOBHm_Chr1g0348481 RchiOBHm_Chr3g0483451 RchiOBHm_Chr5g0060521 RchiOBHm_Chr7g0215031
rosa_laevigata	RLG00000002698 RLG00000022617
rosa_multiflora	Rmu_ssc0000134.1_g000066
rosa_roxburghii	Rroxscaffold_3G00244650
rosa_rugosa	Rorug03G0254500 Rorug07G0149700 Rorug07G0149700
rosa_samantha	Rh1AG253100 Rh3AG184200 Rh3AG254500 Rh4AG241100 Rh4CG255300 Rh5AG463000 Rh5BG374200 Rh5CG248600 Rh7AG170100 Rh7AG286600 Rh7BG278100 Rh7CG306000 Rh7DG290100
rosa_wichuraiana	Rw6G016450 Rw7G024440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	29
AcoI	YGGCCR	1 cut(s)	217
AcsI	RAATTY	1 cut(s)	584
AcuI	CTGAAG	1 cut(s)	138
AfaI	GTAC	2 cut(s)	426, 486
AfiI	CCNNNNNNNGG	1 cut(s)	558
AflII	CTTAAG	1 cut(s)	281
AgsI	TTSAA	4 cut(s)	308, 321, 499, 536
AjnI	CCWGG	3 cut(s)	20, 197, 385
AluBI	AGCT	5 cut(s)	67, 94, 187, 248, 431
AluI	AGCT	5 cut(s)	67, 94, 187, 248, 431
AoxI	GGCC	1 cut(s)	217
ApeKI	GCWGC	2 cut(s)	67, 503
ApoI	RAATTY	1 cut(s)	584
Asp700I	GAANNNNTTC	1 cut(s)	525
AsuHPI	GGTGA	1 cut(s)	408
AxyI	CCTNAGG	1 cut(s)	420
BauI	CACGAG	1 cut(s)	249
BbsI	GAAGAC	1 cut(s)	487
BbvI	GCAGC	2 cut(s)	54, 490
BccI	CCATC	3 cut(s)	396, 421, 521
BciT130I	CCWGG	3 cut(s)	22, 199, 387
BciVI	GTATCC	1 cut(s)	322
BfaI	CTAG	2 cut(s)	188, 428
BfrI	CTTAAG	1 cut(s)	281
BfuI	GTATCC	1 cut(s)	322
BisI	GCNGC	2 cut(s)	68, 504
BlsI	GCNGC	2 cut(s)	69, 505
Bme1390I	CCNGG	3 cut(s)	22, 199, 387
BmiI	GGNNCC	2 cut(s)	108, 410
BmrFI	CCNGG	3 cut(s)	22, 199, 387
BmsI	GCATC	2 cut(s)	288, 553
BpiI	GAAGAC	1 cut(s)	487
BpmI	CTGGAG	1 cut(s)	369
BsaJI	CCNNGG	1 cut(s)	573
BsaWI	WCCGGW	1 cut(s)	592
Bsc4I	CCNNNNNNNGG	1 cut(s)	558
Bse1I	ACTGG	3 cut(s)	108, 158, 439
Bse21I	CCTNAGG	1 cut(s)	420
Bse3DI	GCAATG	1 cut(s)	51
BseBI	CCWGG	3 cut(s)	22, 199, 387
BseDI	CCNNGG	1 cut(s)	573
BseGI	GGATG	1 cut(s)	568
BseLI	CCNNNNNNNGG	1 cut(s)	558
BseMI	GCAATG	1 cut(s)	51
BseMII	CTCAG	2 cut(s)	324, 434
BseNI	ACTGG	3 cut(s)	108, 158, 439
BseXI	GCAGC	2 cut(s)	54, 490
BsgI	GTGCAG	1 cut(s)	273
BshFI	GGCC	1 cut(s)	219
BsiSI	CCGG	2 cut(s)	220, 593
BslI	CCNNNNNNNGG	1 cut(s)	558
BsnI	GGCC	1 cut(s)	219
BspANI	GGCC	1 cut(s)	219
BspCNI	CTCAG	2 cut(s)	325, 433
BspLI	GGNNCC	2 cut(s)	108, 410
BspTI	CTTAAG	1 cut(s)	281
BsrDI	GCAATG	1 cut(s)	51
BsrI	ACTGG	3 cut(s)	108, 158, 439
BssECI	CCNNGG	1 cut(s)	573
BssNAI	GTATAC	1 cut(s)	30
BssSI	CACGAG	1 cut(s)	249
BssT1I	CCWWGG	1 cut(s)	573
Bst1107I	GTATAC	1 cut(s)	30
Bst2BI	CACGAG	1 cut(s)	249
Bst2UI	CCWGG	3 cut(s)	22, 199, 387
Bst4CI	ACNGT	2 cut(s)	82, 226
Bst6I	CTCTTC	1 cut(s)	114
BstAFI	CTTAAG	1 cut(s)	281
BstDEI	CTNAG	2 cut(s)	333, 420
BstF5I	GGATG	1 cut(s)	568
BstNI	CCWGG	3 cut(s)	22, 199, 387
BstSCI	CCNGG	3 cut(s)	20, 197, 385
BstV1I	GCAGC	2 cut(s)	54, 490
BstV2I	GAAGAC	1 cut(s)	487
BstXI	CCANNNNNNTGG	1 cut(s)	178
BstZ17I	GTATAC	1 cut(s)	30
Bsu36I	CCTNAGG	1 cut(s)	420
BsuI	GTATCC	1 cut(s)	322
BsuRI	GGCC	1 cut(s)	219
BtsCI	GGATG	1 cut(s)	568
Csp6I	GTAC	2 cut(s)	425, 485
CviJI	RGCY	8 cut(s)	67, 94, 187, 219, 248, 409, 431, 503
CviKI_1	RGCY	8 cut(s)	67, 94, 187, 219, 248, 409, 431, 503
CviQI	GTAC	2 cut(s)	425, 485
DdeI	CTNAG	2 cut(s)	333, 420
EaeI	YGGCCR	1 cut(s)	217
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
Eco130I	CCWWGG	1 cut(s)	573
Eco57I	CTGAAG	1 cut(s)	138
Eco81I	CCTNAGG	1 cut(s)	420
EcoRII	CCWGG	3 cut(s)	20, 197, 385
EcoT14I	CCWWGG	1 cut(s)	573
ErhI	CCWWGG	1 cut(s)	573
FaiI	YATR	7 cut(s)	15, 30, 177, 179, 236, 260, 345
FblI	GTMKAC	1 cut(s)	29
Fnu4HI	GCNGC	2 cut(s)	68, 504
FokI	GGATG	1 cut(s)	575
Fsp4HI	GCNGC	2 cut(s)	68, 504
FspBI	CTAG	2 cut(s)	188, 428
GluI	GCNGC	2 cut(s)	68, 504
GsuI	CTGGAG	1 cut(s)	369
HaeIII	GGCC	1 cut(s)	219
HapII	CCGG	2 cut(s)	220, 593
HinfI	GANTC	4 cut(s)	238, 293, 317, 438
HpaII	CCGG	2 cut(s)	220, 593
HphI	GGTGA	1 cut(s)	408
Hpy166II	GTNNAC	1 cut(s)	30
Hpy188I	TCNGA	4 cut(s)	118, 243, 393, 445
Hpy188III	TCNNGA	1 cut(s)	533
Hpy8I	GTNNAC	1 cut(s)	30
HpyAV	CCTTC	3 cut(s)	204, 344, 362
HpyCH4III	ACNGT	2 cut(s)	82, 226
HpyCH4V	TGCA	3 cut(s)	62, 254, 566
HpyF3I	CTNAG	2 cut(s)	333, 420
LmnI	GCTCC	1 cut(s)	414
Lsp1109I	GCAGC	2 cut(s)	54, 490
LweI	GCATC	2 cut(s)	288, 553
MaeI	CTAG	2 cut(s)	188, 428
MaeIII	GTNAC	2 cut(s)	156, 462
MboII	GAAGA	4 cut(s)	131, 263, 487, 521
MluCI	AATT	2 cut(s)	536, 584
MlyI	GAGTC	3 cut(s)	232, 287, 432
MmeI	TCCRAC	1 cut(s)	270
MnlI	CCTC	3 cut(s)	34, 117, 429
MroXI	GAANNNNTTC	1 cut(s)	525
MseI	TTAA	2 cut(s)	282, 468
MspCI	CTTAAG	1 cut(s)	281
MspI	CCGG	2 cut(s)	220, 593
MspR9I	CCNGG	3 cut(s)	22, 199, 387
MvaI	CCWGG	3 cut(s)	22, 199, 387
NlaIV	GGNNCC	2 cut(s)	108, 410
PdmI	GAANNNNTTC	1 cut(s)	525
PfeI	GAWTC	1 cut(s)	317
PkrI	GCNGC	2 cut(s)	69, 505
PleI	GAGTC	3 cut(s)	232, 287, 432
PpsI	GAGTC	3 cut(s)	232, 287, 432
Psp6I	CCWGG	3 cut(s)	20, 197, 385
PspGI	CCWGG	3 cut(s)	20, 197, 385
PspN4I	GGNNCC	2 cut(s)	108, 410
RsaI	GTAC	2 cut(s)	426, 486
RsaNI	GTAC	2 cut(s)	425, 485
SaqAI	TTAA	2 cut(s)	282, 468
SatI	GCNGC	2 cut(s)	68, 504
SchI	GAGTC	3 cut(s)	232, 287, 432
ScrFI	CCNGG	3 cut(s)	22, 199, 387
SfaNI	GCATC	2 cut(s)	288, 553
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
Sse9I	AATT	2 cut(s)	536, 584
SspMI	CTAG	2 cut(s)	188, 428
StyD4I	CCNGG	3 cut(s)	20, 197, 385
StyI	CCWWGG	1 cut(s)	573
TaaI	ACNGT	2 cut(s)	82, 226
TaqI	TCGA	1 cut(s)	296
TasI	AATT	2 cut(s)	536, 584
TfiI	GAWTC	1 cut(s)	317
Tru1I	TTAA	2 cut(s)	282, 468
Tru9I	TTAA	2 cut(s)	282, 468
TseI	GCWGC	2 cut(s)	67, 503
TspDTI	ATGAA	1 cut(s)	62
Vha464I	CTTAAG	1 cut(s)	281
XapI	RAATTY	1 cut(s)	584
XmiI	GTMKAC	1 cut(s)	29
XmnI	GAANNNNTTC	1 cut(s)	525
XspI	CTAG	2 cut(s)	188, 428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.