Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003201

Physical Location & Seq

Genomic Coordinates Reverse (-)

79198214 .. 79205978

Gene Structure 7765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG463000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGAGCAGGCCACTACCTAGAAACACCAAACAGGTTGAATGGCAAAATGGTGCTAATGGCCGGACAGTAGAGATTATGATTCCGAAAGCTCGTGCAGATATACACATCAATCTTCCAGCACTTAAGAAGTTGGACTCGATGCTTATTGAAACACTTGATTCAATGGTGGATACTGAGTTTGGGTATGTAGAAGGTGGTAGCAGGGCAGAAGGACGAAACAGAACTCTAGGTCAGAGCATGAGATGGTGGCTCCCATCACCTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010769 GO:0010817 GO:0016020 GO:0016043 GO:0016049 GO:0016324 GO:0017016 GO:0017048 GO:0019899 GO:0022414 GO:0022603 GO:0022604 GO:0030154 GO:0031267 GO:0032092 GO:0032501 GO:0032502 GO:0032879 GO:0032989 GO:0040007 GO:0040008 GO:0043393 GO:0043900 GO:0044093 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0045595 GO:0048468 GO:0048518 GO:0048588 GO:0048589 GO:0048638 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051020 GO:0051049 GO:0051098 GO:0051099 GO:0051128 GO:0051239 GO:0051510 GO:0051704 GO:0060284 GO:0060560 GO:0065007 GO:0065008 GO:0065009 GO:0071840 GO:0071944 GO:0080092 GO:0098590 GO:0098772 GO:1904424 GO:1904426 GO:1904475 GO:1904477 GO:1905097 GO:1905099 GO:2000012 GO:2000241 GO:2001106 GO:2001108

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRONE

Protein Analysis

88

Amino Acids

9.99

Weight (kDa)

9.39

Isoelectric Point (pI)

62.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRONE	PF03759	13 - 88	2.1e-27	PRONE (Plant-specific Rop nucleotide exchanger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31650 AT1G31650
fragaria_vesca	FvH4_5g24650 FvH4_5g24650 FvH4_5g24650
malus_domestica	MD06G1012300.v1.1
prunus_persica	Prupe.5G015000_v2.0.a1 Prupe.5G015000_v2.0.a1 Prupe.5G015000_v2.0.a1 Prupe.5G015000_v2.0.a1
pyrus_communis	pycom06g01030
rosa_chinensis	RchiOBHm_Chr1g0348481 RchiOBHm_Chr3g0483451 RchiOBHm_Chr5g0060521 RchiOBHm_Chr7g0215031
rosa_laevigata	RLG00000002698 RLG00000022617
rosa_multiflora	Rmu_ssc0000134.1_g000066
rosa_roxburghii	Rroxscaffold_3G00244650
rosa_rugosa	Rorug03G0254500 Rorug07G0149700 Rorug07G0149700
rosa_samantha	Rh1AG253100 Rh3AG184200 Rh3AG254500 Rh4AG241100 Rh4CG255300 Rh5AG463000 Rh5BG374200 Rh5CG248600 Rh7AG170100 Rh7AG286600 Rh7BG278100 Rh7CG306000 Rh7DG290100
rosa_wichuraiana	Rw6G016450 Rw7G024440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	58
AflII	CTTAAG	1 cut(s)	122
AgsI	TTSAA	3 cut(s)	38, 149, 162
AleI	CACNNNNGTG	1 cut(s)	262
AluBI	AGCT	1 cut(s)	89
AluI	AGCT	1 cut(s)	89
AoxI	GGCC	2 cut(s)	8, 58
AsuHPI	GGTGA	1 cut(s)	249
BauI	CACGAG	1 cut(s)	90
BccI	CCATC	2 cut(s)	237, 262
BciVI	GTATCC	1 cut(s)	163
BfaI	CTAG	2 cut(s)	18, 227
BfrI	CTTAAG	1 cut(s)	122
BfuI	GTATCC	1 cut(s)	163
BmiI	GGNNCC	1 cut(s)	251
BmsI	GCATC	1 cut(s)	129
BseMII	CTCAG	1 cut(s)	165
BsgI	GTGCAG	1 cut(s)	114
BshFI	GGCC	2 cut(s)	10, 60
BsiSI	CCGG	1 cut(s)	61
BsnI	GGCC	2 cut(s)	10, 60
BspANI	GGCC	2 cut(s)	10, 60
BspCNI	CTCAG	1 cut(s)	166
BspLI	GGNNCC	1 cut(s)	251
BspTI	CTTAAG	1 cut(s)	122
BssSI	CACGAG	1 cut(s)	90
Bst2BI	CACGAG	1 cut(s)	90
Bst4CI	ACNGT	1 cut(s)	67
BstAFI	CTTAAG	1 cut(s)	122
BstC8I	GCNNGC	1 cut(s)	8
BstDEI	CTNAG	2 cut(s)	174, 261
BsuI	GTATCC	1 cut(s)	163
BsuRI	GGCC	2 cut(s)	10, 60
Cac8I	GCNNGC	1 cut(s)	8
CviAII	CATG	1 cut(s)	238
CviJI	RGCY	4 cut(s)	10, 60, 89, 250
CviKI_1	RGCY	4 cut(s)	10, 60, 89, 250
DdeI	CTNAG	2 cut(s)	174, 261
EaeI	YGGCCR	1 cut(s)	58
FaeI	CATG	1 cut(s)	241
FaiI	YATR	4 cut(s)	77, 101, 186, 239
FatI	CATG	1 cut(s)	237
FspBI	CTAG	2 cut(s)	18, 227
HaeIII	GGCC	2 cut(s)	10, 60
HapII	CCGG	1 cut(s)	61
Hin1II	CATG	1 cut(s)	241
HinfI	GANTC	3 cut(s)	79, 134, 158
HpaII	CCGG	1 cut(s)	61
HphI	GGTGA	1 cut(s)	249
Hpy188I	TCNGA	2 cut(s)	84, 234
HpyAV	CCTTC	2 cut(s)	185, 203
HpyCH4III	ACNGT	1 cut(s)	67
HpyCH4V	TGCA	1 cut(s)	95
HpyF3I	CTNAG	2 cut(s)	174, 261
Hsp92II	CATG	1 cut(s)	241
LmnI	GCTCC	1 cut(s)	255
LpnPI	CCDG	4 cut(s)	17, 74, 129, 187
LweI	GCATC	1 cut(s)	129
MaeI	CTAG	2 cut(s)	18, 227
MboII	GAAGA	1 cut(s)	104
MlyI	GAGTC	1 cut(s)	128
MmeI	TCCRAC	1 cut(s)	111
MseI	TTAA	1 cut(s)	123
MslI	CAYNNNNRTG	1 cut(s)	262
MspCI	CTTAAG	1 cut(s)	122
MspI	CCGG	1 cut(s)	61
NlaIII	CATG	1 cut(s)	241
NlaIV	GGNNCC	1 cut(s)	251
OliI	CACNNNNGTG	1 cut(s)	262
PfeI	GAWTC	2 cut(s)	79, 158
PleI	GAGTC	1 cut(s)	128
PpsI	GAGTC	1 cut(s)	128
PspN4I	GGNNCC	1 cut(s)	251
RseI	CAYNNNNRTG	1 cut(s)	262
SaqAI	TTAA	1 cut(s)	123
SchI	GAGTC	1 cut(s)	128
SetI	ASST	6 cut(s)	19, 36, 91, 196, 232, 262
SfaNI	GCATC	1 cut(s)	129
SmiMI	CAYNNNNRTG	1 cut(s)	262
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
SspMI	CTAG	2 cut(s)	18, 227
TaaI	ACNGT	1 cut(s)	67
TaqI	TCGA	1 cut(s)	137
TfiI	GAWTC	2 cut(s)	79, 158
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
Vha464I	CTTAAG	1 cut(s)	122
XspI	CTAG	2 cut(s)	18, 227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.