Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0003201

Physical Location & Seq

Genomic Coordinates Forward (+)

32399147 .. 32402637

Gene Structure 3491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G016450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGACATACAATGGCCTTGAAAATTGCATTCTGAATGTACAATCTTTCGAGAATGAGAGCGGAACAAGTAGAGGAGATGGGTTTGCAACTGACTCACTAGATGATGATGCTTCCACATGTTCTTCTGGCAAAGATGCTTTTGGAAAAGTTTACAAAGTATTGGGTGAAGATATTACAGGAGGGTACAAGGGCCTCAGCACTACTTTAGCATTGTCAAATGCCATCACAAATCTAGCAGCAACGGTTTTTGGAGAGCTGTGGAAACTGGAACCACTATCTGAAGAGAGGAAAACAAAATGGCAAAGAGAAATGGACTGGTTACTCTCCCCTACCAACTATATGGTTGAGCTAGTTCCTTCCAGGCAAAATGGTGCTAATGGCCGGACAGTAGAGATTATGACTCCGAAAGCTCGTGCAGACATACACATCAATCTTCCAGCACTTAAGAAGTTGGACTCTATGCTTATTGAAACACTTGATTCAATGGTGGATACTGAGTTTGGGTATGTAGAAGGTGGTAGCAGGGCAGAAGGACGAAACAGAACTCCAGGTCAGAGCAAGAGATGGTGGCTCCCATCACCTCAGGTACCAGCTACTGGACTCTCTGATACAACAAAGAATAAGTTACTTAAACAGAGTAAGGTGGTACATCAAGTATTCAAGGCTGCCAAAGCCATCAACGAAAGTGTTCTTCTTGAAATGCATGTGCCAACCATTATCAGGGATGCACTTCCCAAGCAAATGACTAATATACAGCTCAGAGATGTATATGACTTCTATTTGGACAACTTGACTTGCAACTTTCAATATTTAAATCATAAGCATAACAATTGGATATATGCACTTTTGGATGGCATGCAGAAGGTTGTGTGCCCTTTGCACCTTGTTTCCATGACCACTAGGGCTAGCACCACCATCTCTGCGCCATACATTTGGAGGGCCTCCACGGCCCATACCACGACCCCCACGTCCCTTGCCACGTGGTGCATTGTTGCCACGTGGGTAGGGATCAGCACGTCCAACCCTCTTTTCATTGGGGTTCTTTCCACCTTTGACTTTGCCATAATTAGTCTCAGGAATTTTCTTTGTCCCAACAGGCCTTGCATTATTGTTCAAAAGAACCTCATTATGCCTCTCAGCCACTTGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010769 GO:0010817 GO:0016020 GO:0016043 GO:0016049 GO:0016324 GO:0017016 GO:0017048 GO:0019899 GO:0022414 GO:0022603 GO:0022604 GO:0030154 GO:0031267 GO:0032092 GO:0032501 GO:0032502 GO:0032879 GO:0032989 GO:0040007 GO:0040008 GO:0043393 GO:0043900 GO:0044093 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0045595 GO:0048468 GO:0048518 GO:0048588 GO:0048589 GO:0048638 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051020 GO:0051049 GO:0051098 GO:0051099 GO:0051128 GO:0051239 GO:0051510 GO:0051704 GO:0060284 GO:0060560 GO:0065007 GO:0065008 GO:0065009 GO:0071840 GO:0071944 GO:0080092 GO:0098590 GO:0098772 GO:1904424 GO:1904426 GO:1904475 GO:1904477 GO:1905097 GO:1905099 GO:2000012 GO:2000241 GO:2001106 GO:2001108

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRONE

Protein Analysis

383

Amino Acids

42.67

Weight (kDa)

7.61

Isoelectric Point (pI)

37.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRONE	PF03759	45 - 251	1.8e-92	PRONE (Plant-specific Rop nucleotide exchanger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31650 AT1G31650
fragaria_vesca	FvH4_5g24650 FvH4_5g24650 FvH4_5g24650
malus_domestica	MD06G1012300.v1.1
prunus_persica	Prupe.5G015000_v2.0.a1 Prupe.5G015000_v2.0.a1 Prupe.5G015000_v2.0.a1 Prupe.5G015000_v2.0.a1
pyrus_communis	pycom06g01030
rosa_chinensis	RchiOBHm_Chr1g0348481 RchiOBHm_Chr3g0483451 RchiOBHm_Chr5g0060521 RchiOBHm_Chr7g0215031
rosa_laevigata	RLG00000002698 RLG00000022617
rosa_multiflora	Rmu_ssc0000134.1_g000066
rosa_roxburghii	Rroxscaffold_3G00244650
rosa_rugosa	Rorug03G0254500 Rorug07G0149700 Rorug07G0149700
rosa_samantha	Rh1AG253100 Rh3AG184200 Rh3AG254500 Rh4AG241100 Rh4CG255300 Rh5AG463000 Rh5BG374200 Rh5CG248600 Rh7AG170100 Rh7AG286600 Rh7BG278100 Rh7CG306000 Rh7DG290100
rosa_wichuraiana	Rw6G016450 Rw7G024440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	967
Acc65I	GGTACC	1 cut(s)	586
AccB1I	GGYRCC	1 cut(s)	586
AccB7I	CCANNNNNTGG	1 cut(s)	596
AccBSI	CCGCTC	1 cut(s)	60
AciI	CCGC	1 cut(s)	60
AclWI	GGATC	1 cut(s)	1016
AcoI	YGGCCR	1 cut(s)	379
AcsI	RAATTY	1 cut(s)	1078
AcuI	CTGAAG	1 cut(s)	300
AcvI	CACGTG	2 cut(s)	981, 999
AdeI	CACNNNGTG	1 cut(s)	984
AfaI	GTAC	4 cut(s)	39, 185, 588, 648
AfiI	CCNNNNNNNGG	2 cut(s)	596, 720
AflII	CTTAAG	1 cut(s)	443
AflIII	ACRYGT	1 cut(s)	116
AgsI	TTSAA	7 cut(s)	20, 470, 483, 661, 698, 806, 1115
AjiI	CACGTC	2 cut(s)	969, 1017
AjnI	CCWGG	2 cut(s)	359, 547
AjuI	GAANNNNNNNTTGG	2 cut(s)	1013, 1045
AluBI	AGCT	5 cut(s)	256, 349, 410, 593, 757
AluI	AGCT	5 cut(s)	256, 349, 410, 593, 757
Alw26I	GTCTC	1 cut(s)	1076
AlwI	GGATC	1 cut(s)	1016
AlwNI	CAGNNNCTG	1 cut(s)	596
AoxI	GGCC	6 cut(s)	13, 190, 379, 939, 948, 1097
ApeKI	GCWGC	2 cut(s)	236, 665
ApoI	RAATTY	1 cut(s)	1078
Asp700I	GAANNNNTTC	1 cut(s)	687
Asp718I	GGTACC	1 cut(s)	586
AspLEI	GCGC	1 cut(s)	925
AspS9I	GGNCC	3 cut(s)	190, 939, 949
AsuHPI	GGTGA	2 cut(s)	176, 570
AsuNHI	GCTAGC	1 cut(s)	905
AxyI	CCTNAGG	1 cut(s)	582
BaeGI	GKGCMC	1 cut(s)	875
BanI	GGYRCC	1 cut(s)	586
BauI	CACGAG	1 cut(s)	411
BbrPI	CACGTG	2 cut(s)	981, 999
BbvCI	CCTCAGC	1 cut(s)	194
BbvI	GCAGC	2 cut(s)	248, 652
BccI	CCATC	7 cut(s)	71, 230, 558, 583, 683, 845, 923
BceAI	ACGGC	1 cut(s)	963
BciT130I	CCWGG	2 cut(s)	361, 549
BciVI	GTATCC	1 cut(s)	484
BcoDI	GTCTC	1 cut(s)	1076
BfaI	CTAG	5 cut(s)	98, 233, 350, 900, 906
BfrI	CTTAAG	1 cut(s)	443
BfuI	GTATCC	1 cut(s)	484
BglI	GCCNNNNNGGC	1 cut(s)	947
BisI	GCNGC	2 cut(s)	237, 666
BlsI	GCNGC	2 cut(s)	238, 667
Bme1390I	CCNGG	2 cut(s)	361, 549
BmgBI	CACGTC	2 cut(s)	969, 1017
BmgT120I	GGNCC	3 cut(s)	190, 939, 949
BmiI	GGNNCC	3 cut(s)	270, 572, 588
BmrFI	CCNGG	2 cut(s)	361, 549
BmsI	GCATC	3 cut(s)	97, 124, 715
BmtI	GCTAGC	1 cut(s)	909
BpmI	CTGGAG	1 cut(s)	531
Bpu10I	CCTNAGC	1 cut(s)	194
BsaAI	YACGTR	2 cut(s)	981, 999
BsaJI	CCNNGG	1 cut(s)	945
Bsc4I	CCNNNNNNNGG	2 cut(s)	596, 720
Bse1I	ACTGG	3 cut(s)	270, 320, 601
Bse21I	CCTNAGG	1 cut(s)	582
BseBI	CCWGG	2 cut(s)	361, 549
BseDI	CCNNGG	1 cut(s)	945
BseGI	GGATG	2 cut(s)	730, 856
BseLI	CCNNNNNNNGG	2 cut(s)	596, 720
BseMII	CTCAG	6 cut(s)	208, 486, 596, 772, 1087, 1150
BseNI	ACTGG	3 cut(s)	270, 320, 601
BseRI	GAGGAG	1 cut(s)	87
BseSI	GKGCMC	1 cut(s)	875
BseXI	GCAGC	2 cut(s)	248, 652
BsgI	GTGCAG	1 cut(s)	435
BshFI	GGCC	6 cut(s)	15, 192, 381, 941, 950, 1099
BshNI	GGYRCC	1 cut(s)	586
BsiSI	CCGG	1 cut(s)	382
BslFI	GGGAC	2 cut(s)	955, 1074
BslI	CCNNNNNNNGG	2 cut(s)	596, 720
BsmAI	GTCTC	1 cut(s)	1076
BsmFI	GGGAC	2 cut(s)	955, 1074
BsmI	GAATGC	1 cut(s)	27
BsnI	GGCC	6 cut(s)	15, 192, 381, 941, 950, 1099
Bsp1286I	GDGCHC	1 cut(s)	875
Bsp1407I	TGTACA	1 cut(s)	37
Bsp143I	GATC	1 cut(s)	1008
BspACI	CCGC	1 cut(s)	60
BspANI	GGCC	6 cut(s)	15, 192, 381, 941, 950, 1099
BspCNI	CTCAG	6 cut(s)	207, 487, 595, 771, 1086, 1149
BspLI	GGNNCC	3 cut(s)	270, 572, 588
BspOI	GCTAGC	1 cut(s)	909
BspPI	GGATC	1 cut(s)	1016
BspT107I	GGYRCC	1 cut(s)	586
BspTI	CTTAAG	1 cut(s)	443
BsrBI	CCGCTC	1 cut(s)	60
BsrGI	TGTACA	1 cut(s)	37
BsrI	ACTGG	3 cut(s)	270, 320, 601
BssECI	CCNNGG	1 cut(s)	945
BssMI	GATC	1 cut(s)	1008
BssSI	CACGAG	1 cut(s)	411
Bst2BI	CACGAG	1 cut(s)	411
Bst2UI	CCWGG	2 cut(s)	361, 549
Bst4CI	ACNGT	2 cut(s)	244, 388
Bst6I	CTCTTC	1 cut(s)	276
BstAFI	CTTAAG	1 cut(s)	443
BstAUI	TGTACA	1 cut(s)	37
BstBAI	YACGTR	2 cut(s)	981, 999
BstC8I	GCNNGC	2 cut(s)	857, 907
BstDEI	CTNAG	6 cut(s)	194, 495, 582, 758, 1073, 1136
BstDSI	CCRYGG	1 cut(s)	945
BstF5I	GGATG	2 cut(s)	730, 856
BstHHI	GCGC	1 cut(s)	925
BstKTI	GATC	1 cut(s)	1011
BstMAI	GTCTC	1 cut(s)	1076
BstMBI	GATC	1 cut(s)	1008
BstMWI	GCNNNNNNNGC	2 cut(s)	671, 947
BstNI	CCWGG	2 cut(s)	361, 549
BstNSI	RCATGY	3 cut(s)	120, 707, 859
BstSCI	CCNGG	2 cut(s)	359, 547
BstSLI	GKGCMC	1 cut(s)	875
BstV1I	GCAGC	2 cut(s)	248, 652
BstXI	CCANNNNNNTGG	2 cut(s)	340, 933
Bsu36I	CCTNAGG	1 cut(s)	582
BsuI	GTATCC	1 cut(s)	484
BsuRI	GGCC	6 cut(s)	15, 192, 381, 941, 950, 1099
BtgI	CCRYGG	1 cut(s)	945
BtrI	CACGTC	2 cut(s)	969, 1017
BtsCI	GGATG	2 cut(s)	730, 856
Cac8I	GCNNGC	2 cut(s)	857, 907
CaiI	CAGNNNCTG	1 cut(s)	596
CfoI	GCGC	1 cut(s)	925
Cfr13I	GGNCC	3 cut(s)	190, 939, 949
Csp6I	GTAC	4 cut(s)	38, 184, 587, 647
CspCI	CAANNNNNGTGG	2 cut(s)	955, 990
CviAII	CATG	4 cut(s)	117, 704, 856, 892
CviQI	GTAC	4 cut(s)	38, 184, 587, 647
DdeI	CTNAG	6 cut(s)	194, 495, 582, 758, 1073, 1136
DpnI	GATC	1 cut(s)	1010
DpnII	GATC	1 cut(s)	1008
DraI	TTTAAA	1 cut(s)	813
DraIII	CACNNNGTG	1 cut(s)	984
DrdI	GACNNNNNNGTC	1 cut(s)	967
DseDI	GACNNNNNNGTC	1 cut(s)	967
EaeI	YGGCCR	1 cut(s)	379
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
Eco147I	AGGCCT	1 cut(s)	1099
Eco57I	CTGAAG	1 cut(s)	300
Eco72I	CACGTG	2 cut(s)	981, 999
Eco81I	CCTNAGG	1 cut(s)	582
EcoO109I	RGGNCCY	2 cut(s)	190, 939
EcoRII	CCWGG	2 cut(s)	359, 547
EcoT22I	ATGCAT	1 cut(s)	705
FaeI	CATG	4 cut(s)	120, 707, 859, 895
FaqI	GGGAC	2 cut(s)	955, 1074
FatI	CATG	4 cut(s)	116, 703, 855, 891
Fnu4HI	GCNGC	2 cut(s)	237, 666
FokI	GGATG	2 cut(s)	737, 863
Fsp4HI	GCNGC	2 cut(s)	237, 666
FspBI	CTAG	5 cut(s)	98, 233, 350, 900, 906
GlaI	GCGC	1 cut(s)	924
GluI	GCNGC	2 cut(s)	237, 666
GsuI	CTGGAG	1 cut(s)	531
HaeIII	GGCC	6 cut(s)	15, 192, 381, 941, 950, 1099
HapII	CCGG	1 cut(s)	382
HhaI	GCGC	1 cut(s)	925
Hin1II	CATG	4 cut(s)	120, 707, 859, 895
Hin6I	GCGC	1 cut(s)	923
HinP1I	GCGC	1 cut(s)	923
HinfI	GANTC	5 cut(s)	92, 400, 455, 479, 600
HpaII	CCGG	1 cut(s)	382
HphI	GGTGA	2 cut(s)	176, 570
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	6 cut(s)	33, 280, 405, 555, 607, 761
Hpy188III	TCNNGA	3 cut(s)	49, 695, 1075
Hpy8I	GTNNAC	1 cut(s)	151
HpyAV	CCTTC	4 cut(s)	366, 506, 524, 856
HpyCH4III	ACNGT	2 cut(s)	244, 388
HpyCH4IV	ACGT	4 cut(s)	968, 980, 998, 1016
HpyF10VI	GCNNNNNNNGC	2 cut(s)	671, 947
HpyF3I	CTNAG	6 cut(s)	194, 495, 582, 758, 1073, 1136
HpySE526I	ACGT	4 cut(s)	968, 980, 998, 1016
Hsp92II	CATG	4 cut(s)	120, 707, 859, 895
HspAI	GCGC	1 cut(s)	923
KpnI	GGTACC	1 cut(s)	590
Kzo9I	GATC	1 cut(s)	1008
LmnI	GCTCC	1 cut(s)	576
Lsp1109I	GCAGC	2 cut(s)	248, 652
LweI	GCATC	3 cut(s)	97, 124, 715
MaeI	CTAG	5 cut(s)	98, 233, 350, 900, 906
MaeII	ACGT	4 cut(s)	968, 980, 998, 1016
MaeIII	GTNAC	2 cut(s)	318, 624
MalI	GATC	1 cut(s)	1010
MbiI	CCGCTC	1 cut(s)	60
MboI	GATC	1 cut(s)	1008
MboII	GAAGA	5 cut(s)	114, 179, 293, 425, 683
MfeI	CAATTG	1 cut(s)	829
MhlI	GDGCHC	1 cut(s)	875
MluCI	AATT	4 cut(s)	22, 829, 1065, 1078
MlyI	GAGTC	4 cut(s)	86, 394, 449, 594
MmeI	TCCRAC	2 cut(s)	432, 1044
Mph1103I	ATGCAT	1 cut(s)	705
MroXI	GAANNNNTTC	1 cut(s)	687
MseI	TTAA	3 cut(s)	444, 630, 812
MspCI	CTTAAG	1 cut(s)	443
MspI	CCGG	1 cut(s)	382
MspR9I	CCNGG	2 cut(s)	361, 549
MunI	CAATTG	1 cut(s)	829
Mva1269I	GAATGC	1 cut(s)	27
MvaI	CCWGG	2 cut(s)	361, 549
MwoI	GCNNNNNNNGC	2 cut(s)	671, 947
NdeII	GATC	1 cut(s)	1008
NheI	GCTAGC	1 cut(s)	905
NlaIII	CATG	4 cut(s)	120, 707, 859, 895
NlaIV	GGNNCC	3 cut(s)	270, 572, 588
NsiI	ATGCAT	1 cut(s)	705
NspI	RCATGY	3 cut(s)	120, 707, 859
PaeI	GCATGC	1 cut(s)	859
PceI	AGGCCT	1 cut(s)	1099
PciI	ACATGT	1 cut(s)	116
PcsI	WCGNNNNNNNCGW	1 cut(s)	965
PctI	GAATGC	1 cut(s)	27
PdmI	GAANNNNTTC	1 cut(s)	687
PfeI	GAWTC	1 cut(s)	479
PflMI	CCANNNNNTGG	1 cut(s)	596
PkrI	GCNGC	2 cut(s)	238, 667
PleI	GAGTC	4 cut(s)	86, 394, 449, 594
PmaCI	CACGTG	2 cut(s)	981, 999
PmlI	CACGTG	2 cut(s)	981, 999
PpsI	GAGTC	4 cut(s)	86, 394, 449, 594
Ppu21I	YACGTR	2 cut(s)	981, 999
PscI	ACATGT	1 cut(s)	116
Psp6I	CCWGG	2 cut(s)	359, 547
PspCI	CACGTG	2 cut(s)	981, 999
PspGI	CCWGG	2 cut(s)	359, 547
PspN4I	GGNNCC	3 cut(s)	270, 572, 588
PspPI	GGNCC	3 cut(s)	190, 939, 949
PstNI	CAGNNNCTG	1 cut(s)	596
RsaI	GTAC	4 cut(s)	39, 185, 588, 648
RsaNI	GTAC	4 cut(s)	38, 184, 587, 647
SaqAI	TTAA	3 cut(s)	444, 630, 812
SatI	GCNGC	2 cut(s)	237, 666
Sau3AI	GATC	1 cut(s)	1008
Sau96I	GGNCC	3 cut(s)	190, 939, 949
SchI	GAGTC	4 cut(s)	86, 394, 449, 594
ScrFI	CCNGG	2 cut(s)	361, 549
SduI	GDGCHC	1 cut(s)	875
SfaNI	GCATC	3 cut(s)	97, 124, 715
SfiI	GGCCNNNNNGGCC	1 cut(s)	947
SmiI	ATTTAAAT	1 cut(s)	813
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
SphI	GCATGC	1 cut(s)	859
Sse9I	AATT	4 cut(s)	22, 829, 1065, 1078
SseBI	AGGCCT	1 cut(s)	1099
SsiI	CCGC	1 cut(s)	60
SspI	AATATT	1 cut(s)	809
SspMI	CTAG	5 cut(s)	98, 233, 350, 900, 906
StuI	AGGCCT	1 cut(s)	1099
StyD4I	CCNGG	2 cut(s)	359, 547
SwaI	ATTTAAAT	1 cut(s)	813
TaaI	ACNGT	2 cut(s)	244, 388
TaiI	ACGT	4 cut(s)	971, 983, 1001, 1019
TaqI	TCGA	1 cut(s)	48
TasI	AATT	4 cut(s)	22, 829, 1065, 1078
TatI	WGTACW	1 cut(s)	37
TfiI	GAWTC	1 cut(s)	479
Tru1I	TTAA	3 cut(s)	444, 630, 812
Tru9I	TTAA	3 cut(s)	444, 630, 812
TseI	GCWGC	2 cut(s)	236, 665
TspDTI	ATGAA	1 cut(s)	1021
Van91I	CCANNNNNTGG	1 cut(s)	596
Vha464I	CTTAAG	1 cut(s)	443
XapI	RAATTY	1 cut(s)	1078
XceI	RCATGY	3 cut(s)	120, 707, 859
XmnI	GAANNNNTTC	1 cut(s)	687
XspI	CTAG	5 cut(s)	98, 233, 350, 900, 906
Zsp2I	ATGCAT	1 cut(s)	705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.