Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0003201

Physical Location & Seq

Genomic Coordinates Forward (+)

50685290 .. 50687205

Gene Structure 1916 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG255300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGGCCAAGAACTTGAAGAACAAGCAGCGCCGCCGGTCATCCTCCGATGGCAAGATTTGGGCGAGTTGCCGGAAAACGAGCTGATTATTAAGGCTTCTGAAGACAATACTCCTCCTCATGGCAGTGAAGATATTACAGGAGGGTATAAGGGCCTCAGCACTGCTTTAGCATTGTCAAATGCCACCACAAATCTAGCAGCAACGGTTTTTGGAGAGCTGTGGAAACTGGAACCACTATCTGAAGAGAGGAAAACAAAATGGAAAAATGGTGCTAATGGCCGGACATTAGAGATTATGACTCCGAAAGCTCGTGCAGACATACACATCAATCTTCCAGCACTTAAGAAGTTGGACTCGATGCTTATTGAAACACTTGATTCATTGGTGGTTACTGAGTTTGGGTATGTAGAAGGTGGTAGCAGGGCAGAAGGACGAAACAGAACTCCAGGGCAGAGCAAGAGATGGTGGCTCCCATCACCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010769 GO:0010817 GO:0016020 GO:0016043 GO:0016049 GO:0016324 GO:0017016 GO:0017048 GO:0019899 GO:0022414 GO:0022603 GO:0022604 GO:0030154 GO:0031267 GO:0032092 GO:0032501 GO:0032502 GO:0032879 GO:0032989 GO:0040007 GO:0040008 GO:0043393 GO:0043900 GO:0044093 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0045595 GO:0048468 GO:0048518 GO:0048588 GO:0048589 GO:0048638 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051020 GO:0051049 GO:0051098 GO:0051099 GO:0051128 GO:0051239 GO:0051510 GO:0051704 GO:0060284 GO:0060560 GO:0065007 GO:0065008 GO:0065009 GO:0071840 GO:0071944 GO:0080092 GO:0098590 GO:0098772 GO:1904424 GO:1904426 GO:1904475 GO:1904477 GO:1905097 GO:1905099 GO:2000012 GO:2000241 GO:2001106 GO:2001108

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRONE

Protein Analysis

160

Amino Acids

17.62

Weight (kDa)

5.15

Isoelectric Point (pI)

59.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRONE	PF03759	43 - 89	4.7e-19	PRONE (Plant-specific Rop nucleotide exchanger)
PRONE	PF03759	90 - 160	1e-24	PRONE (Plant-specific Rop nucleotide exchanger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31650 AT1G31650
fragaria_vesca	FvH4_5g24650 FvH4_5g24650 FvH4_5g24650
malus_domestica	MD06G1012300.v1.1
prunus_persica	Prupe.5G015000_v2.0.a1 Prupe.5G015000_v2.0.a1 Prupe.5G015000_v2.0.a1 Prupe.5G015000_v2.0.a1
pyrus_communis	pycom06g01030
rosa_chinensis	RchiOBHm_Chr1g0348481 RchiOBHm_Chr3g0483451 RchiOBHm_Chr5g0060521 RchiOBHm_Chr7g0215031
rosa_laevigata	RLG00000002698 RLG00000022617
rosa_multiflora	Rmu_ssc0000134.1_g000066
rosa_roxburghii	Rroxscaffold_3G00244650
rosa_rugosa	Rorug03G0254500 Rorug07G0149700 Rorug07G0149700
rosa_samantha	Rh1AG253100 Rh3AG184200 Rh3AG254500 Rh4AG241100 Rh4CG255300 Rh5AG463000 Rh5BG374200 Rh5CG248600 Rh7AG170100 Rh7AG286600 Rh7BG278100 Rh7CG306000 Rh7DG290100
rosa_wichuraiana	Rw6G016450 Rw7G024440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	32
AcoI	YGGCCR	1 cut(s)	277
AcuI	CTGAAG	2 cut(s)	120, 261
AfiI	CCNNNNNNNGG	1 cut(s)	119
AflII	CTTAAG	1 cut(s)	341
AgsI	TTSAA	2 cut(s)	17, 368
AjnI	CCWGG	1 cut(s)	445
AluBI	AGCT	3 cut(s)	82, 217, 308
AluI	AGCT	3 cut(s)	82, 217, 308
AoxI	GGCC	3 cut(s)	4, 151, 277
ApeKI	GCWGC	2 cut(s)	26, 197
AspLEI	GCGC	1 cut(s)	31
AspS9I	GGNCC	2 cut(s)	4, 151
AsuHPI	GGTGA	1 cut(s)	468
BauI	CACGAG	1 cut(s)	309
BbsI	GAAGAC	1 cut(s)	108
BbvCI	CCTCAGC	1 cut(s)	155
BbvI	GCAGC	2 cut(s)	38, 209
BccI	CCATC	3 cut(s)	42, 456, 481
BciT130I	CCWGG	1 cut(s)	447
BfaI	CTAG	1 cut(s)	194
BfoI	RGCGCY	1 cut(s)	32
BfrI	CTTAAG	1 cut(s)	341
BisI	GCNGC	3 cut(s)	27, 32, 198
BlsI	GCNGC	3 cut(s)	28, 33, 199
Bme1390I	CCNGG	1 cut(s)	447
BmgT120I	GGNCC	2 cut(s)	4, 151
BmiI	GGNNCC	2 cut(s)	231, 470
BmrFI	CCNGG	1 cut(s)	447
BmsI	GCATC	1 cut(s)	348
BpiI	GAAGAC	1 cut(s)	108
BpmI	CTGGAG	1 cut(s)	429
Bpu10I	CCTNAGC	1 cut(s)	155
BsaJI	CCNNGG	1 cut(s)	446
Bsc4I	CCNNNNNNNGG	1 cut(s)	119
Bse118I	RCCGGY	1 cut(s)	34
Bse1I	ACTGG	1 cut(s)	231
BseBI	CCWGG	1 cut(s)	447
BseDI	CCNNGG	1 cut(s)	446
BseGI	GGATG	1 cut(s)	39
BseLI	CCNNNNNNNGG	1 cut(s)	119
BseMII	CTCAG	2 cut(s)	169, 384
BseNI	ACTGG	1 cut(s)	231
BseRI	GAGGAG	2 cut(s)	102, 105
BseXI	GCAGC	2 cut(s)	38, 209
BsgI	GTGCAG	1 cut(s)	333
BshFI	GGCC	3 cut(s)	6, 153, 279
BsiSI	CCGG	3 cut(s)	35, 71, 280
BslI	CCNNNNNNNGG	1 cut(s)	119
BsnI	GGCC	3 cut(s)	6, 153, 279
BspACI	CCGC	1 cut(s)	32
BspANI	GGCC	3 cut(s)	6, 153, 279
BspCNI	CTCAG	2 cut(s)	168, 385
BspLI	GGNNCC	2 cut(s)	231, 470
BspTI	CTTAAG	1 cut(s)	341
BsrFI	RCCGGY	1 cut(s)	34
BsrI	ACTGG	1 cut(s)	231
BssAI	RCCGGY	1 cut(s)	34
BssECI	CCNNGG	1 cut(s)	446
BssSI	CACGAG	1 cut(s)	309
Bst2BI	CACGAG	1 cut(s)	309
Bst2UI	CCWGG	1 cut(s)	447
Bst4CI	ACNGT	1 cut(s)	205
Bst6I	CTCTTC	1 cut(s)	237
BstAFI	CTTAAG	1 cut(s)	341
BstDEI	CTNAG	3 cut(s)	155, 393, 480
BstF5I	GGATG	1 cut(s)	39
BstH2I	RGCGCY	1 cut(s)	32
BstHHI	GCGC	1 cut(s)	31
BstNI	CCWGG	1 cut(s)	447
BstSCI	CCNGG	1 cut(s)	445
BstV1I	GCAGC	2 cut(s)	38, 209
BstV2I	GAAGAC	1 cut(s)	108
BsuRI	GGCC	3 cut(s)	6, 153, 279
BtsCI	GGATG	1 cut(s)	39
BtsI	GCAGTG	2 cut(s)	130, 159
BtsIMutI	CAGTG	2 cut(s)	130, 159
CfoI	GCGC	1 cut(s)	31
Cfr10I	RCCGGY	1 cut(s)	34
Cfr13I	GGNCC	2 cut(s)	4, 151
CviAII	CATG	1 cut(s)	119
CviJI	RGCY	8 cut(s)	6, 82, 95, 153, 217, 279, 308, 469
CviKI_1	RGCY	8 cut(s)	6, 82, 95, 153, 217, 279, 308, 469
DdeI	CTNAG	3 cut(s)	155, 393, 480
EaeI	YGGCCR	1 cut(s)	277
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
Eco57I	CTGAAG	2 cut(s)	120, 261
EcoO109I	RGGNCCY	1 cut(s)	151
EcoRII	CCWGG	1 cut(s)	445
FaeI	CATG	1 cut(s)	122
FaiI	YATR	5 cut(s)	120, 147, 296, 320, 405
FatI	CATG	1 cut(s)	118
Fnu4HI	GCNGC	3 cut(s)	27, 32, 198
FokI	GGATG	1 cut(s)	26
Fsp4HI	GCNGC	3 cut(s)	27, 32, 198
FspBI	CTAG	1 cut(s)	194
GlaI	GCGC	1 cut(s)	30
GluI	GCNGC	3 cut(s)	27, 32, 198
GsuI	CTGGAG	1 cut(s)	429
HaeII	RGCGCY	1 cut(s)	32
HaeIII	GGCC	3 cut(s)	6, 153, 279
HapII	CCGG	3 cut(s)	35, 71, 280
HhaI	GCGC	1 cut(s)	31
Hin1II	CATG	1 cut(s)	122
Hin6I	GCGC	1 cut(s)	29
HinP1I	GCGC	1 cut(s)	29
HinfI	GANTC	3 cut(s)	298, 353, 377
HpaII	CCGG	3 cut(s)	35, 71, 280
HphI	GGTGA	1 cut(s)	468
Hpy188I	TCNGA	4 cut(s)	47, 100, 241, 303
HpyAV	CCTTC	2 cut(s)	404, 422
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4V	TGCA	1 cut(s)	314
HpyF3I	CTNAG	3 cut(s)	155, 393, 480
Hsp92II	CATG	1 cut(s)	122
HspAI	GCGC	1 cut(s)	29
LmnI	GCTCC	1 cut(s)	474
LpnPI	CCDG	9 cut(s)	48, 84, 123, 212, 293, 348, 406, 432, 459
Lsp1109I	GCAGC	2 cut(s)	38, 209
LweI	GCATC	1 cut(s)	348
MaeI	CTAG	1 cut(s)	194
MaeIII	GTNAC	1 cut(s)	388
MboII	GAAGA	5 cut(s)	29, 113, 140, 254, 323
MlyI	GAGTC	2 cut(s)	292, 347
MmeI	TCCRAC	1 cut(s)	330
MnlI	CCTC	6 cut(s)	53, 123, 126, 134, 164, 240
MseI	TTAA	2 cut(s)	90, 342
MslI	CAYNNNNRTG	1 cut(s)	123
MspCI	CTTAAG	1 cut(s)	341
MspI	CCGG	3 cut(s)	35, 71, 280
MspR9I	CCNGG	1 cut(s)	447
MvaI	CCWGG	1 cut(s)	447
NlaIII	CATG	1 cut(s)	122
NlaIV	GGNNCC	2 cut(s)	231, 470
PfeI	GAWTC	1 cut(s)	377
PkrI	GCNGC	3 cut(s)	28, 33, 199
PleI	GAGTC	2 cut(s)	292, 347
PpsI	GAGTC	2 cut(s)	292, 347
Psp6I	CCWGG	1 cut(s)	445
PspGI	CCWGG	1 cut(s)	445
PspN4I	GGNNCC	2 cut(s)	231, 470
PspPI	GGNCC	2 cut(s)	4, 151
RseI	CAYNNNNRTG	1 cut(s)	123
SaqAI	TTAA	2 cut(s)	90, 342
SatI	GCNGC	3 cut(s)	27, 32, 198
Sau96I	GGNCC	2 cut(s)	4, 151
SchI	GAGTC	2 cut(s)	292, 347
ScrFI	CCNGG	1 cut(s)	447
SetI	ASST	5 cut(s)	84, 219, 310, 415, 481
SfaNI	GCATC	1 cut(s)	348
SmiMI	CAYNNNNRTG	1 cut(s)	123
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
SsiI	CCGC	1 cut(s)	32
SspMI	CTAG	1 cut(s)	194
StyD4I	CCNGG	1 cut(s)	445
TaaI	ACNGT	1 cut(s)	205
TaqI	TCGA	1 cut(s)	356
TauI	GCSGC	1 cut(s)	34
TfiI	GAWTC	1 cut(s)	377
Tru1I	TTAA	2 cut(s)	90, 342
Tru9I	TTAA	2 cut(s)	90, 342
TscAI	CASTG	2 cut(s)	130, 166
TseI	GCWGC	2 cut(s)	26, 197
TspDTI	ATGAA	1 cut(s)	369
TspRI	CASTG	2 cut(s)	130, 166
Vha464I	CTTAAG	1 cut(s)	341
XspI	CTAG	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.