Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0003201

Physical Location & Seq

Genomic Coordinates Reverse (-)

27762963 .. 27764240

Gene Structure 1278 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG254500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGTTGAGCTAGTTCATTCCAGGAAAAATGGTGCTAATGGCCGGACATTAGAGATTTTGACTCCGAAAGCTCGTGCAGACATACACATCAATCTTCCAGCACTTAAGAAGTTGGACTTGATGCTTATTGAAACACTTGATTCATTGGTGGTTACTGAGTTTGGGTATGTAGAAGGTGGTAGCAGGGCAGAAGGACGAAACAGAACTCCAGGTCAGAGCAAGAGATGGTGGCTCCCATCACCTCAGGTACCAGCTACTGGACTCTCTGATACAGAAAAGAATAAGTTACTTAAACAGGGTAAGGTGGTACATCAAGTATTCAAGGCTGCCAGAACCATCAATGAAAGTGTTCTTCTTGAAATGCATCTGCCAACCATTATCAGGGATGCACTTCCCAAGAGCTTTGAAGCTTTGAATCAACATGATGTTGCTGTGGTGGTGGATCCAATTCAGAGTGTGAAGAGGAAGGTGGTCATTGATACCTTCCGCCTTATCAACCCACAGACTATGATGCTCGGTCAAGAACCTCGGCAGACCACATCCAATCTGGGCCATCTTAATAAACCATCTATTCAAGTAAGTTCCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010769 GO:0010817 GO:0016020 GO:0016043 GO:0016049 GO:0016324 GO:0017016 GO:0017048 GO:0019899 GO:0022414 GO:0022603 GO:0022604 GO:0030154 GO:0031267 GO:0032092 GO:0032501 GO:0032502 GO:0032879 GO:0032989 GO:0040007 GO:0040008 GO:0043393 GO:0043900 GO:0044093 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0045595 GO:0048468 GO:0048518 GO:0048588 GO:0048589 GO:0048638 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051020 GO:0051049 GO:0051098 GO:0051099 GO:0051128 GO:0051239 GO:0051510 GO:0051704 GO:0060284 GO:0060560 GO:0065007 GO:0065008 GO:0065009 GO:0071840 GO:0071944 GO:0080092 GO:0098590 GO:0098772 GO:1904424 GO:1904426 GO:1904475 GO:1904477 GO:1905097 GO:1905099 GO:2000012 GO:2000241 GO:2001106 GO:2001108

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRONE

Protein Analysis

196

Amino Acids

21.83

Weight (kDa)

9.81

Isoelectric Point (pI)

48.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRONE	PF03759	1 - 137	1.3e-49	PRONE (Plant-specific Rop nucleotide exchanger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31650 AT1G31650
fragaria_vesca	FvH4_5g24650 FvH4_5g24650 FvH4_5g24650
malus_domestica	MD06G1012300.v1.1
prunus_persica	Prupe.5G015000_v2.0.a1 Prupe.5G015000_v2.0.a1 Prupe.5G015000_v2.0.a1 Prupe.5G015000_v2.0.a1
pyrus_communis	pycom06g01030
rosa_chinensis	RchiOBHm_Chr1g0348481 RchiOBHm_Chr3g0483451 RchiOBHm_Chr5g0060521 RchiOBHm_Chr7g0215031
rosa_laevigata	RLG00000002698 RLG00000022617
rosa_multiflora	Rmu_ssc0000134.1_g000066
rosa_roxburghii	Rroxscaffold_3G00244650
rosa_rugosa	Rorug03G0254500 Rorug07G0149700 Rorug07G0149700
rosa_samantha	Rh1AG253100 Rh3AG184200 Rh3AG254500 Rh4AG241100 Rh4CG255300 Rh5AG463000 Rh5BG374200 Rh5CG248600 Rh7AG170100 Rh7AG286600 Rh7BG278100 Rh7CG306000 Rh7DG290100
rosa_wichuraiana	Rw6G016450 Rw7G024440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	247
AccB1I	GGYRCC	1 cut(s)	247
AccB7I	CCANNNNNTGG	1 cut(s)	257
AciI	CCGC	1 cut(s)	487
AclWI	GGATC	2 cut(s)	437, 450
AcoI	YGGCCR	1 cut(s)	40
AfaI	GTAC	2 cut(s)	249, 309
AfiI	CCNNNNNNNGG	2 cut(s)	257, 381
AflII	CTTAAG	1 cut(s)	104
AgsI	TTSAA	6 cut(s)	131, 322, 359, 407, 415, 575
AjnI	CCWGG	2 cut(s)	20, 208
AluBI	AGCT	5 cut(s)	10, 71, 254, 402, 410
AluI	AGCT	5 cut(s)	10, 71, 254, 402, 410
AlwI	GGATC	2 cut(s)	437, 450
AlwNI	CAGNNNCTG	1 cut(s)	257
AoxI	GGCC	2 cut(s)	40, 550
ApeKI	GCWGC	1 cut(s)	326
Asp700I	GAANNNNTTC	1 cut(s)	348
Asp718I	GGTACC	1 cut(s)	247
AspS9I	GGNCC	1 cut(s)	550
AsuHPI	GGTGA	1 cut(s)	231
AxyI	CCTNAGG	1 cut(s)	243
BamHI	GGATCC	1 cut(s)	442
BanI	GGYRCC	1 cut(s)	247
BauI	CACGAG	1 cut(s)	72
BbvI	GCAGC	1 cut(s)	313
BccI	CCATC	5 cut(s)	219, 244, 344, 561, 574
BciT130I	CCWGG	2 cut(s)	22, 210
BfaI	CTAG	1 cut(s)	11
BfrI	CTTAAG	1 cut(s)	104
BisI	GCNGC	1 cut(s)	327
BlsI	GCNGC	1 cut(s)	328
Bme1390I	CCNGG	2 cut(s)	22, 210
BmgT120I	GGNCC	1 cut(s)	550
BmiI	GGNNCC	3 cut(s)	233, 249, 444
BmrFI	CCNGG	2 cut(s)	22, 210
BmsI	GCATC	4 cut(s)	111, 373, 376, 501
BpmI	CTGGAG	1 cut(s)	192
BsaJI	CCNNGG	1 cut(s)	527
Bsc4I	CCNNNNNNNGG	2 cut(s)	257, 381
Bse1I	ACTGG	1 cut(s)	262
Bse21I	CCTNAGG	1 cut(s)	243
BseBI	CCWGG	2 cut(s)	22, 210
BseDI	CCNNGG	1 cut(s)	527
BseGI	GGATG	2 cut(s)	391, 539
BseLI	CCNNNNNNNGG	2 cut(s)	257, 381
BseMII	CTCAG	2 cut(s)	147, 257
BseNI	ACTGG	1 cut(s)	262
BseXI	GCAGC	1 cut(s)	313
BsgI	GTGCAG	1 cut(s)	96
BshFI	GGCC	2 cut(s)	42, 552
BshNI	GGYRCC	1 cut(s)	247
BsiSI	CCGG	1 cut(s)	43
BslI	CCNNNNNNNGG	2 cut(s)	257, 381
BsnI	GGCC	2 cut(s)	42, 552
Bsp143I	GATC	1 cut(s)	442
BspACI	CCGC	1 cut(s)	487
BspANI	GGCC	2 cut(s)	42, 552
BspCNI	CTCAG	2 cut(s)	148, 256
BspLI	GGNNCC	3 cut(s)	233, 249, 444
BspPI	GGATC	2 cut(s)	437, 450
BspT107I	GGYRCC	1 cut(s)	247
BspTI	CTTAAG	1 cut(s)	104
BsrI	ACTGG	1 cut(s)	262
BssECI	CCNNGG	1 cut(s)	527
BssMI	GATC	1 cut(s)	442
BssSI	CACGAG	1 cut(s)	72
Bst2BI	CACGAG	1 cut(s)	72
Bst2UI	CCWGG	2 cut(s)	22, 210
Bst6I	CTCTTC	1 cut(s)	455
BstAFI	CTTAAG	1 cut(s)	104
BstDEI	CTNAG	2 cut(s)	156, 243
BstF5I	GGATG	2 cut(s)	391, 539
BstKTI	GATC	1 cut(s)	445
BstMBI	GATC	1 cut(s)	442
BstNI	CCWGG	2 cut(s)	22, 210
BstSCI	CCNGG	2 cut(s)	20, 208
BstV1I	GCAGC	1 cut(s)	313
BstX2I	RGATCY	1 cut(s)	442
BstYI	RGATCY	1 cut(s)	442
Bsu36I	CCTNAGG	1 cut(s)	243
BsuRI	GGCC	2 cut(s)	42, 552
BtsCI	GGATG	2 cut(s)	391, 539
CaiI	CAGNNNCTG	1 cut(s)	257
Cfr13I	GGNCC	1 cut(s)	550
Csp6I	GTAC	2 cut(s)	248, 308
CviAII	CATG	1 cut(s)	422
CviJI	RGCY	9 cut(s)	10, 42, 71, 232, 254, 326, 402, 410, 552
CviKI_1	RGCY	9 cut(s)	10, 42, 71, 232, 254, 326, 402, 410, 552
CviQI	GTAC	2 cut(s)	248, 308
DdeI	CTNAG	2 cut(s)	156, 243
DpnI	GATC	1 cut(s)	444
DpnII	GATC	1 cut(s)	442
EaeI	YGGCCR	1 cut(s)	40
Eam1104I	CTCTTC	1 cut(s)	455
EarI	CTCTTC	1 cut(s)	455
EciI	GGCGGA	1 cut(s)	476
Eco81I	CCTNAGG	1 cut(s)	243
EcoRII	CCWGG	2 cut(s)	20, 208
EcoT22I	ATGCAT	1 cut(s)	366
FaeI	CATG	1 cut(s)	425
FaiI	YATR	4 cut(s)	83, 168, 423, 509
FalI	AAGNNNNNCTT	2 cut(s)	101, 133
FatI	CATG	1 cut(s)	421
Fnu4HI	GCNGC	1 cut(s)	327
FokI	GGATG	2 cut(s)	398, 526
Fsp4HI	GCNGC	1 cut(s)	327
FspBI	CTAG	1 cut(s)	11
GluI	GCNGC	1 cut(s)	327
GsuI	CTGGAG	1 cut(s)	192
HaeIII	GGCC	2 cut(s)	42, 552
HapII	CCGG	1 cut(s)	43
Hin1II	CATG	1 cut(s)	425
HindIII	AAGCTT	1 cut(s)	408
HinfI	GANTC	4 cut(s)	61, 140, 261, 415
HpaII	CCGG	1 cut(s)	43
HphI	GGTGA	1 cut(s)	231
Hpy188I	TCNGA	4 cut(s)	66, 216, 268, 453
Hpy188III	TCNNGA	2 cut(s)	356, 521
HpyAV	CCTTC	4 cut(s)	167, 185, 460, 493
HpyCH4V	TGCA	3 cut(s)	77, 364, 389
HpyF3I	CTNAG	2 cut(s)	156, 243
Hsp92II	CATG	1 cut(s)	425
KpnI	GGTACC	1 cut(s)	251
Kzo9I	GATC	1 cut(s)	442
LmnI	GCTCC	1 cut(s)	237
Lsp1109I	GCAGC	1 cut(s)	313
LweI	GCATC	4 cut(s)	111, 373, 376, 501
MaeI	CTAG	1 cut(s)	11
MaeIII	GTNAC	2 cut(s)	151, 285
MalI	GATC	1 cut(s)	444
MboI	GATC	1 cut(s)	442
MboII	GAAGA	3 cut(s)	86, 344, 472
MflI	RGATCY	1 cut(s)	442
MluCI	AATT	1 cut(s)	447
MlyI	GAGTC	2 cut(s)	55, 255
MmeI	TCCRAC	1 cut(s)	93
MnlI	CCTC	3 cut(s)	252, 456, 537
Mph1103I	ATGCAT	1 cut(s)	366
MroXI	GAANNNNTTC	1 cut(s)	348
MseI	TTAA	3 cut(s)	105, 291, 558
MspCI	CTTAAG	1 cut(s)	104
MspI	CCGG	1 cut(s)	43
MspR9I	CCNGG	2 cut(s)	22, 210
MvaI	CCWGG	2 cut(s)	22, 210
NdeII	GATC	1 cut(s)	442
NlaIII	CATG	1 cut(s)	425
NlaIV	GGNNCC	3 cut(s)	233, 249, 444
NmeAIII	GCCGAG	1 cut(s)	508
NsiI	ATGCAT	1 cut(s)	366
PdmI	GAANNNNTTC	1 cut(s)	348
PfeI	GAWTC	2 cut(s)	140, 415
PflMI	CCANNNNNTGG	1 cut(s)	257
PfoI	TCCNGGA	1 cut(s)	20
PkrI	GCNGC	1 cut(s)	328
PleI	GAGTC	2 cut(s)	55, 255
PpsI	GAGTC	2 cut(s)	55, 255
Psp6I	CCWGG	2 cut(s)	20, 208
PspGI	CCWGG	2 cut(s)	20, 208
PspN4I	GGNNCC	3 cut(s)	233, 249, 444
PspPI	GGNCC	1 cut(s)	550
PstNI	CAGNNNCTG	1 cut(s)	257
PsuI	RGATCY	1 cut(s)	442
RsaI	GTAC	2 cut(s)	249, 309
RsaNI	GTAC	2 cut(s)	248, 308
SaqAI	TTAA	3 cut(s)	105, 291, 558
SatI	GCNGC	1 cut(s)	327
Sau3AI	GATC	1 cut(s)	442
Sau96I	GGNCC	1 cut(s)	550
SchI	GAGTC	2 cut(s)	55, 255
ScrFI	CCNGG	2 cut(s)	22, 210
SfaNI	GCATC	4 cut(s)	111, 373, 376, 501
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	1 cut(s)	447
SsiI	CCGC	1 cut(s)	487
SspMI	CTAG	1 cut(s)	11
StyD4I	CCNGG	2 cut(s)	20, 208
TaqII	GACCGA	1 cut(s)	506
TasI	AATT	1 cut(s)	447
TfiI	GAWTC	2 cut(s)	140, 415
Tru1I	TTAA	3 cut(s)	105, 291, 558
Tru9I	TTAA	3 cut(s)	105, 291, 558
TseI	GCWGC	1 cut(s)	326
TspDTI	ATGAA	3 cut(s)	5, 132, 357
Van91I	CCANNNNNTGG	1 cut(s)	257
Vha464I	CTTAAG	1 cut(s)	104
XcmI	CCANNNNNNNNNTGG	1 cut(s)	544
XmnI	GAANNNNTTC	1 cut(s)	348
XspI	CTAG	1 cut(s)	11
Zsp2I	ATGCAT	1 cut(s)	366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.