Prupe.5G015000_v2.0.a1

Rop guanine nucleotide exchange factor

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Reverse (-)
1638889 .. 1645720
6832 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G015000.1

Sequence Viewer

Length: 1680 bp
ATGAGGAGAGGGCTTGCTTGTTGCACCCGGGACAGAGAGATTAGCATCGACTTTGATGAGCAAGAGAGGATAATGACATACAATGGACTTGAAAATTGCATTCTCAACGGCCAATCTCTCGAAAATGAAAGCACAACAAGCAGAGGAGATGGGTTTGCAACTGACTCACTGGATGATGATGCTTCAACCTGTTCTTCAGGGAAAGATGCTTTTGGATCATTCTCTTCAAAATGGTTGACAGTGAACAGAGATGAACAAAGACTGGATGAATGGGAGCCCTTAGACAGCCCCAACCATTTCTATGTCAAAGAAAAACCATCTTACGTTCTTCAGAATTCAGACGTGGAGGAAATGAAAGAAAAATTTTCAAAGCTGTTATTAGGTGAAGATGTCACAGGAGGATACAAGGGCCTCAGCACAGCAGTAGCACTGTCAAATGCCATCACAAATCTAGCAGCAACAGTTTTTGGAGAGCTGTGGAAACTGGAACCACTACCTGAAGAGAGAAAAGGCAAATGGCGAAGAGAAATGGACTGGTTGCTCTCCCCTACGAACTATATGGTTGAGCTGGTTCCTGCTAAGCAAAATGGTGCAAATGGTCGGATGTTAGAGATTATGACCCCAAAAGCCCGTGGAGACATACACATGAATCTTCCAGCTCTTCAGAAGTTGGACTCCATGCTTATTGAGACACTTGAGTCAATGGTCAATACTGAGTTTTGGTATGCAGAAGGTGGTAGCCGGGCAGAAGGAAGGAACAAAGTTTCACGTCAGAGCAAGAGATGGTGGCTTCCAGCACCCCAAGTACAAGCTACTGGGCTGTCTGATACAGCAAAACAGAAATTGCTCAATCAGGGTAGGGTGGTTCATCAAGTATTCAAGGCTGCCAGATCCATCAATGAAAGTGTTCTGCTTGAAATGCCTGTGCCAACTGTTGTCAGGGATGCACTTCCGAAGTCTGGAAAAGCAAGCCTTGGTGAGGAACTATACAAGGTCTTAACTGCAGAAACAAACTCAGCTGAGGAAATGGTCAATTCACTTAACCTAAAATCTGAACACAATGCCCTTGAGGTCATTAACAGGCTGGAAGCTGCTGTATTTTCTTGGAAAGAAAGAATTACAGAACAAGTTAGCGGTAAATCTCCTGTTCGAACATCTTGGTCCTTCATTAAGGACCCGTTGTCCGAGATTGATAAGGTGGAGTCACTATTGGACCGAGCAGAAGTACTTTTACAACAGCTGAAAACCAGATATCCCAACCTTCCCCAAACTTTTCTTGATGTTACAAAAATCCAATATGGCAAGGATGTTGGGCATTCAATTATGGAAGCATATTCTCGAGTACTTGGAAACTTGGCTTTCAGCATACTGTCTAGAGTAGGAGATGTTTTGCAAGAAGATGCTTTGAACAATCCCAATTCATTTACAGCATCAAGTTACTTTCCATGGATTAATATCAGCCATAACTCTTCAATGGCTGGCCAAAACATTAGATACTCATTCATTGATGGGAACAAGGGGGATCGCCGACATTCTGATTCGACTTTGGGTAGTATCGACTTAGAATTTTCATACAGTGTGGCTAAAGACAGCCCTGTGACGGCAACACCAAGTCGAGCACGTGTATGGTGCATTGGTAGAGAGGCTTGTGTGAGTGTTTCCCCTACAAACTCCCCTTGA

Protein Analysis

560

Amino Acids

62.52

Weight (kDa)

5.43

Isoelectric Point (pI)

48.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 697
AciI CCGC 1 cut(s) 1134
AclWI GGATC 3 cut(s) 223, 885, 1530
AcoI YGGCCR 2 cut(s) 109, 1480
AcsI RAATTY 3 cut(s) 334, 362, 1565
AcuI CTGAAG 4 cut(s) 180, 314, 519, 647
AcvI CACGTG 1 cut(s) 1622
AfaI GTAC 3 cut(s) 807, 1227, 1344
AfiI CCNNNNNNNGG 3 cut(s) 959, 979, 1600
AflIII ACRYGT 1 cut(s) 1621
AgsI TTSAA 9 cut(s) 92, 186, 228, 369, 880, 917, 1320, 1408, 1473
AhdI GACNNNNNGTC 1 cut(s) 1180
AjiI CACGTC 2 cut(s) 343, 770
AluBI AGCT 8 cut(s) 373, 475, 568, 659, 812, 1019, 1091, 1240
AluI AGCT 8 cut(s) 373, 475, 568, 659, 812, 1019, 1091, 1240
Alw21I GWGCWC 1 cut(s) 1621
Alw26I GTCTC 2 cut(s) 630, 683
AlwI GGATC 3 cut(s) 223, 885, 1530
Ama87I CYCGRG 2 cut(s) 27, 1338
AoxI GGCC 3 cut(s) 109, 409, 1480
ApeKI GCWGC 3 cut(s) 455, 884, 1091
ApoI RAATTY 3 cut(s) 334, 362, 1565
AseI ATTAAT 1 cut(s) 1452
Asp700I GAANNNNTTC 1 cut(s) 906
AspS9I GGNCC 4 cut(s) 409, 1161, 1174, 1213
AsuC2I CCSGG 3 cut(s) 28, 29, 743
AsuHPI GGTGA 2 cut(s) 395, 989
AsuII TTCGAA 1 cut(s) 1150
AvaI CYCGRG 2 cut(s) 27, 1338
AvaII GGWCC 3 cut(s) 1161, 1174, 1213
BalI TGGCCA 1 cut(s) 1482
BanII GRGCYC 1 cut(s) 279
BarI GAAGNNNNNNTAC 2 cut(s) 1215, 1247
BbrPI CACGTG 1 cut(s) 1622
Bbv12I GWGCWC 1 cut(s) 1621
BbvCI CCTCAGC 2 cut(s) 413, 1020
BbvI GCAGC 3 cut(s) 467, 871, 1078
BccI CCATC 6 cut(s) 143, 325, 449, 777, 902, 1502
BceAI ACGGC 2 cut(s) 124, 1617
BciVI GTATCC 1 cut(s) 395
BcnI CCSGG 3 cut(s) 28, 29, 743
BcoDI GTCTC 2 cut(s) 630, 683
BfaI CTAG 2 cut(s) 452, 1374
BfmI CTRYAG 1 cut(s) 1002
BfuI GTATCC 1 cut(s) 395
BisI GCNGC 3 cut(s) 456, 885, 1092
BlpI GCTNAGC 1 cut(s) 579
BlsI GCNGC 3 cut(s) 457, 886, 1093
BmcAI AGTACT 2 cut(s) 1227, 1344
Bme1390I CCNGG 3 cut(s) 28, 29, 743
Bme18I GGWCC 3 cut(s) 1161, 1174, 1213
BmeRI GACNNNNNGTC 1 cut(s) 1180
BmeT110I CYCGRG 2 cut(s) 27, 1338
BmgBI CACGTC 2 cut(s) 343, 770
BmgT120I GGNCC 4 cut(s) 409, 1161, 1174, 1213
BmiI GGNNCC 4 cut(s) 276, 489, 573, 1176
BmrFI CCNGG 3 cut(s) 28, 29, 743
BmrI ACTGGG 1 cut(s) 825
BmsI GCATC 6 cut(s) 54, 169, 196, 934, 1390, 1439
BmuI ACTGGG 1 cut(s) 825
Bpu10I CCTNAGC 2 cut(s) 413, 1020
Bpu1102I GCTNAGC 1 cut(s) 579
Bpu14I TTCGAA 1 cut(s) 1150
BpuEI CTTGAG 2 cut(s) 716, 1088
BpuMI CCSGG 3 cut(s) 28, 29, 743
BsaAI YACGTR 1 cut(s) 1622
BsaBI GATNNNNATC 2 cut(s) 44, 1454
BsaJI CCNNGG 4 cut(s) 27, 631, 973, 1445
Bsc4I CCNNNNNNNGG 3 cut(s) 959, 979, 1600
Bse1I ACTGG 5 cut(s) 174, 267, 489, 539, 820
Bse8I GATNNNNATC 2 cut(s) 44, 1454
BseDI CCNNGG 4 cut(s) 27, 631, 973, 1445
BseGI GGATG 5 cut(s) 178, 271, 609, 949, 1312
BseJI GATNNNNATC 2 cut(s) 44, 1454
BseLI CCNNNNNNNGG 3 cut(s) 959, 979, 1600
BseMII CTCAG 4 cut(s) 427, 705, 1011, 1029
BseNI ACTGG 5 cut(s) 174, 267, 489, 539, 820
BseRI GAGGAG 2 cut(s) 19, 159
BseXI GCAGC 3 cut(s) 467, 871, 1078
BshFI GGCC 3 cut(s) 111, 411, 1482
BsiHKAI GWGCWC 1 cut(s) 1621
BsiHKCI CYCGRG 2 cut(s) 27, 1338
BsiSI CCGG 2 cut(s) 28, 742
BslFI GGGAC 1 cut(s) 44
BslI CCNNNNNNNGG 3 cut(s) 959, 979, 1600
BsmAI GTCTC 2 cut(s) 630, 683
BsmFI GGGAC 1 cut(s) 44
BsmI GAATGC 2 cut(s) 99, 1315
BsnI GGCC 3 cut(s) 111, 411, 1482
BsoBI CYCGRG 2 cut(s) 27, 1338
Bsp119I TTCGAA 1 cut(s) 1150
Bsp1286I GDGCHC 2 cut(s) 279, 1621
Bsp143I GATC 3 cut(s) 215, 890, 1522
Bsp1720I GCTNAGC 1 cut(s) 579
Bsp19I CCATGG 1 cut(s) 1445
BspACI CCGC 1 cut(s) 1134
BspANI GGCC 3 cut(s) 111, 411, 1482
BspCNI CTCAG 4 cut(s) 426, 706, 1012, 1028
BspLI GGNNCC 4 cut(s) 276, 489, 573, 1176
BspMAI CTGCAG 1 cut(s) 1006
BspPI GGATC 3 cut(s) 223, 885, 1530
BspQI GCTCTTC 1 cut(s) 666
BspT104I TTCGAA 1 cut(s) 1150
BsrI ACTGG 5 cut(s) 174, 267, 489, 539, 820
BssECI CCNNGG 4 cut(s) 27, 631, 973, 1445
BssMI GATC 3 cut(s) 215, 890, 1522
BssT1I CCWWGG 2 cut(s) 973, 1445
Bst4CI ACNGT 6 cut(s) 241, 432, 463, 934, 1371, 1577
Bst6I CTCTTC 5 cut(s) 229, 495, 517, 666, 1474
BstBAI YACGTR 1 cut(s) 1622
BstBI TTCGAA 1 cut(s) 1150
BstC8I GCNNGC 3 cut(s) 15, 970, 1480
BstDEI CTNAG 7 cut(s) 280, 413, 579, 714, 1015, 1020, 1561
BstDSI CCRYGG 2 cut(s) 631, 1445
BstENI CCTNNNNNAGG 1 cut(s) 977
BstF5I GGATG 5 cut(s) 178, 271, 609, 949, 1312
BstKTI GATC 3 cut(s) 218, 893, 1525
BstMAI GTCTC 2 cut(s) 630, 683
BstMBI GATC 3 cut(s) 215, 890, 1522
BstMWI GCNNNNNNNGC 2 cut(s) 138, 919
BstSCI CCNGG 3 cut(s) 26, 27, 741
BstSFI CTRYAG 1 cut(s) 1002
BstV1I GCAGC 3 cut(s) 467, 871, 1078
BstX2I RGATCY 1 cut(s) 890
BstYI RGATCY 1 cut(s) 890
BsuI GTATCC 1 cut(s) 395
BsuRI GGCC 3 cut(s) 111, 411, 1482
BtgI CCRYGG 2 cut(s) 631, 1445
BtrI CACGTC 2 cut(s) 343, 770
BtsCI GGATG 5 cut(s) 178, 271, 609, 949, 1312
BtsIMutI CAGTG 4 cut(s) 167, 246, 428, 1582
Cac8I GCNNGC 3 cut(s) 15, 970, 1480
Cfr13I GGNCC 4 cut(s) 409, 1161, 1174, 1213
Cfr9I CCCGGG 1 cut(s) 27
Csp6I GTAC 3 cut(s) 806, 1226, 1343
CviAII CATG 3 cut(s) 646, 679, 1446
CviQI GTAC 3 cut(s) 806, 1226, 1343
DdeI CTNAG 7 cut(s) 280, 413, 579, 714, 1015, 1020, 1561
DpnI GATC 3 cut(s) 217, 892, 1524
DpnII GATC 3 cut(s) 215, 890, 1522
DrdI GACNNNNNNGTC 1 cut(s) 697
DriI GACNNNNNGTC 1 cut(s) 1180
DseDI GACNNNNNNGTC 1 cut(s) 697
EaeI YGGCCR 2 cut(s) 109, 1480
Eam1104I CTCTTC 5 cut(s) 229, 495, 517, 666, 1474
Eam1105I GACNNNNNGTC 1 cut(s) 1180
EarI CTCTTC 5 cut(s) 229, 495, 517, 666, 1474
Eco130I CCWWGG 2 cut(s) 973, 1445
Eco24I GRGCYC 1 cut(s) 279
Eco32I GATATC 1 cut(s) 1253
Eco47I GGWCC 3 cut(s) 1161, 1174, 1213
Eco57I CTGAAG 4 cut(s) 180, 314, 519, 647
Eco72I CACGTG 1 cut(s) 1622
Eco88I CYCGRG 2 cut(s) 27, 1338
EcoNI CCTNNNNNAGG 1 cut(s) 977
EcoO109I RGGNCCY 2 cut(s) 409, 1174
EcoRI GAATTC 1 cut(s) 334
EcoRV GATATC 1 cut(s) 1253
EcoT14I CCWWGG 2 cut(s) 973, 1445
EcoT38I GRGCYC 1 cut(s) 279
ErhI CCWWGG 2 cut(s) 973, 1445
FaeI CATG 3 cut(s) 649, 682, 1449
FalI AAGNNNNNCTT 2 cut(s) 957, 989
FaqI GGGAC 1 cut(s) 44
FatI CATG 3 cut(s) 645, 678, 1445
Fnu4HI GCNGC 3 cut(s) 456, 885, 1092
FokI GGATG 5 cut(s) 185, 278, 616, 956, 1319
FriOI GRGCYC 1 cut(s) 279
Fsp4HI GCNGC 3 cut(s) 456, 885, 1092
FspBI CTAG 2 cut(s) 452, 1374
GluI GCNGC 3 cut(s) 456, 885, 1092
HaeIII GGCC 3 cut(s) 111, 411, 1482
HapII CCGG 2 cut(s) 28, 742
Hin1II CATG 3 cut(s) 649, 682, 1449
HincII GTYRAC 1 cut(s) 237
HindII GTYRAC 1 cut(s) 237
HinfI GANTC 6 cut(s) 164, 649, 674, 698, 1202, 1538
HpaII CCGG 2 cut(s) 28, 742
HphI GGTGA 2 cut(s) 395, 989
Hpy166II GTNNAC 2 cut(s) 237, 244
Hpy188III TCNNGA 5 cut(s) 119, 960, 1277, 1338, 1374
Hpy8I GTNNAC 2 cut(s) 237, 244
HpyAV CCTTC 5 cut(s) 725, 743, 747, 1174, 1271
HpyCH4III ACNGT 6 cut(s) 241, 432, 463, 934, 1371, 1577
HpyCH4IV ACGT 4 cut(s) 324, 342, 769, 1621
HpyCH4V TGCA 9 cut(s) 24, 99, 158, 593, 728, 947, 1004, 1393, 1632
HpyF10VI GCNNNNNNNGC 2 cut(s) 138, 919
HpyF3I CTNAG 7 cut(s) 280, 413, 579, 714, 1015, 1020, 1561
HpySE526I ACGT 4 cut(s) 324, 342, 769, 1621
Hsp92II CATG 3 cut(s) 649, 682, 1449
Kzo9I GATC 3 cut(s) 215, 890, 1522
LguI GCTCTTC 1 cut(s) 666
LmnI GCTCC 1 cut(s) 274
Lsp1109I GCAGC 3 cut(s) 467, 871, 1078
LweI GCATC 6 cut(s) 54, 169, 196, 934, 1390, 1439
MaeI CTAG 2 cut(s) 452, 1374
MaeII ACGT 4 cut(s) 324, 342, 769, 1621
MaeIII GTNAC 5 cut(s) 391, 1203, 1282, 1436, 1597
MalI GATC 3 cut(s) 217, 892, 1524
MboI GATC 3 cut(s) 215, 890, 1522
MflI RGATCY 1 cut(s) 890
MhlI GDGCHC 2 cut(s) 279, 1621
MlsI TGGCCA 1 cut(s) 1482
MluCI AATT 9 cut(s) 94, 334, 362, 842, 1033, 1116, 1320, 1417, 1565
MluNI TGGCCA 1 cut(s) 1482
MlyI GAGTC 4 cut(s) 158, 668, 707, 1211
MmeI TCCRAC 2 cut(s) 581, 651
MnlI CCTC 9 cut(s) 60, 137, 340, 392, 422, 973, 1015, 1063, 1636
Mox20I TGGCCA 1 cut(s) 1482
MroXI GAANNNNTTC 1 cut(s) 906
MscI TGGCCA 1 cut(s) 1482
MseI TTAA 5 cut(s) 998, 1041, 1077, 1170, 1452
MslI CAYNNNNRTG 3 cut(s) 300, 644, 1624
Msp20I TGGCCA 1 cut(s) 1482
MspA1I CMGCKG 2 cut(s) 1019, 1240
MspI CCGG 2 cut(s) 28, 742
MspR9I CCNGG 3 cut(s) 28, 29, 743
Mva1269I GAATGC 2 cut(s) 99, 1315
MwoI GCNNNNNNNGC 2 cut(s) 138, 919
NciI CCSGG 3 cut(s) 28, 29, 743
NcoI CCATGG 1 cut(s) 1445
NdeII GATC 3 cut(s) 215, 890, 1522
NlaIII CATG 3 cut(s) 649, 682, 1449
NlaIV GGNNCC 4 cut(s) 276, 489, 573, 1176
NmuCI GTSAC 3 cut(s) 391, 1203, 1597
NspV TTCGAA 1 cut(s) 1150
PaeR7I CTCGAG 1 cut(s) 1338
PciSI GCTCTTC 1 cut(s) 666
PctI GAATGC 2 cut(s) 99, 1315
PdmI GAANNNNTTC 1 cut(s) 906
PfeI GAWTC 2 cut(s) 649, 1538
PkrI GCNGC 3 cut(s) 457, 886, 1093
PleI GAGTC 4 cut(s) 158, 668, 706, 1210
PmaCI CACGTG 1 cut(s) 1622
PmlI CACGTG 1 cut(s) 1622
PpsI GAGTC 4 cut(s) 158, 668, 706, 1210
Ppu21I YACGTR 1 cut(s) 1622
PpuMI RGGWCCY 1 cut(s) 1174
PshBI ATTAAT 1 cut(s) 1452
Psp5II RGGWCCY 1 cut(s) 1174
PspCI CACGTG 1 cut(s) 1622
PspN4I GGNNCC 4 cut(s) 276, 489, 573, 1176
PspPI GGNCC 4 cut(s) 409, 1161, 1174, 1213
PspPPI RGGWCCY 1 cut(s) 1174
PstI CTGCAG 1 cut(s) 1006
PsuI RGATCY 1 cut(s) 890
PvuII CAGCTG 2 cut(s) 1019, 1240
RsaI GTAC 3 cut(s) 807, 1227, 1344
RsaNI GTAC 3 cut(s) 806, 1226, 1343
RseI CAYNNNNRTG 3 cut(s) 300, 644, 1624
SapI GCTCTTC 1 cut(s) 666
SaqAI TTAA 5 cut(s) 998, 1041, 1077, 1170, 1452
SatI GCNGC 3 cut(s) 456, 885, 1092
Sau3AI GATC 3 cut(s) 215, 890, 1522
Sau96I GGNCC 4 cut(s) 409, 1161, 1174, 1213
ScaI AGTACT 2 cut(s) 1227, 1344
SchI GAGTC 4 cut(s) 158, 668, 707, 1211
ScrFI CCNGG 3 cut(s) 28, 29, 743
SduI GDGCHC 2 cut(s) 279, 1621
SfaNI GCATC 6 cut(s) 54, 169, 196, 934, 1390, 1439
SfcI CTRYAG 1 cut(s) 1002
Sfr274I CTCGAG 1 cut(s) 1338
SfuI TTCGAA 1 cut(s) 1150
SinI GGWCC 3 cut(s) 1161, 1174, 1213
SlaI CTCGAG 1 cut(s) 1338
SmaI CCCGGG 1 cut(s) 29
SmiMI CAYNNNNRTG 3 cut(s) 300, 644, 1624
SmlI CTYRAG 3 cut(s) 695, 1067, 1338
SmoI CTYRAG 3 cut(s) 695, 1067, 1338
Sse9I AATT 9 cut(s) 94, 334, 362, 842, 1033, 1116, 1320, 1417, 1565
SsiI CCGC 1 cut(s) 1134
SspMI CTAG 2 cut(s) 452, 1374
StyD4I CCNGG 3 cut(s) 26, 27, 741
StyI CCWWGG 2 cut(s) 973, 1445
TaaI ACNGT 6 cut(s) 241, 432, 463, 934, 1371, 1577
TaiI ACGT 4 cut(s) 327, 345, 772, 1624
TaqI TCGA 7 cut(s) 48, 120, 1150, 1339, 1541, 1557, 1615
TaqII GACCGA 1 cut(s) 1230
TasI AATT 9 cut(s) 94, 334, 362, 842, 1033, 1116, 1320, 1417, 1565
TatI WGTACW 3 cut(s) 805, 1225, 1342
TfiI GAWTC 2 cut(s) 649, 1538
Tru1I TTAA 5 cut(s) 998, 1041, 1077, 1170, 1452
Tru9I TTAA 5 cut(s) 998, 1041, 1077, 1170, 1452
TscAI CASTG 4 cut(s) 174, 246, 435, 1582
TseFI GTSAC 3 cut(s) 391, 1203, 1597
TseI GCWGC 3 cut(s) 455, 884, 1091
Tsp45I GTSAC 3 cut(s) 391, 1203, 1597
TspMI CCCGGG 1 cut(s) 27
TspRI CASTG 4 cut(s) 174, 246, 435, 1582
VpaK11BI GGWCC 3 cut(s) 1161, 1174, 1213
VspI ATTAAT 1 cut(s) 1452
XagI CCTNNNNNAGG 1 cut(s) 977
XapI RAATTY 3 cut(s) 334, 362, 1565
XbaI TCTAGA 1 cut(s) 1373
XhoI CTCGAG 1 cut(s) 1338
XmaI CCCGGG 1 cut(s) 27
XmnI GAANNNNTTC 1 cut(s) 906
XspI CTAG 2 cut(s) 452, 1374
ZrmI AGTACT 2 cut(s) 1227, 1344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.