AT1G31650

exchange factor

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
11326251 .. 11330791
4541 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G31650.1

Sequence Viewer

Length: 1731 bp
ATGATGCTGATGAGAAGAAGGTTGGCTTGCTGTAGCAGGGAGAGGGAGATTAGTATCGATTTCGATGAACATGAACAAGATAAAATGATTACATATTATGGCTTGGAAACTTGTATTATCAATAATCAATCATATGAAGAAGAGAGTGGAACAAGTCGAGGAGATGGATGTCTTACAGATTCGTTAGATGATGATGCATTTTCAAGCTGTTCATCAAGCAAAGATGCCTCTAGCTCTTTTTCTTCGAAATGGTTACCGATGAAGAATGATGAACACAGTTGCGATGGTTTGAACTTATCTGGAAGGTCTCAACATTTTGATGCTAAGGAGAAGAAGAAACAAGGCTATGGCAGTAGCCAACATTTTGATGCTAAGGAGAAACCAGGGTATGTGTACTGTCATTTGGATGTGGAAGCTATGAAGGAGAAATTTTCTAAGTTATTGCTCGGCGAAGATGTCACTGGGGGATGTAAGGGTGTCCAAGTAGCTTTGGCTTTGTCAAATGCTGTAACACATCTTGCTACGTCGATTTTTGGCGAGCTCTGGAAATTGGAACCTTTGTGTGAAGAGAAGAAACAGAAATGGAGAAGGGAAATGGATTGGCTACTTTCTCCAACTAACTACATGATTGAGTTAGTCCCTTCTAAGCAAAATGATGCCAATGGAAGATCACTTGAGATAATGACTCCGAAAGCCCGCGCAGACATTCATATGAATCTCCCAGCTCTTCAGAAGTTGGACTCAATGCTAATTGAGACACTGGATTCTATGGTGAACACAGAGTTTTGGTATTCTGAGATTGGTAGTAGAGCTGAAGGGAAGAACAAGAGTACAAGTGAGAGCAAACGATGGTGGCTTCCATCGCCACAAGTGCCTAAACCTGGACTCTCTAACTCAGGAAGGAAGAAATTGCTTGACAAAGGAAAAGTTGTTTATCAAGTCTTCAAAGCTACAAAAGCCATAAACGAAAACATTCTTCTTGAAATGCCAGTTCCCATTGTTATCAAGGAAGCAATACCTAAATCTGGAAAGAACAGCCTCGGTGATGAACTGTACAAGATGTTGGCTGTGGAATCTGCAACAGTAGATGAAATCTTTATATCGCTCAATCTGGGAACCGAACATGCAGCACTCGAGACAGTTAACAAGTTAGAATCTGCTATGTTTGCTTGGAAAGAAAGGATTACAGAACAAGGCAGCAATGGTAAATCCCCTGTAAGAGCATCGTGGTCATTCGCTAAAGATCCGTTGTCTGAAATTGGTCGCAATGAGTCACTCTTGAACCGAGCAGAAGCGCTTAGAACTCAGATCAAATCCAAACACCCTAATCTCCCTCACTCGTTTCTTGATGCTACAAAGATCCAATATGACAAGGACATAGGTCATGCGGTTCTCGAAGCATATTCCCGAACACTTGCGAATCTAGCTTTCCGGATTCTTTCAAGAATGGGAGAAATCTTGAAAGAAGATTCTTTAAGCAACCCTAACTCTCCTGCACCACCGAGTTGCTTCCCTAGCTCCCGTGACCCTTATAGGACACCTGAGAGACCTCTGCTTTCGTCCCGTGTAAGGCATTCTTTAACCGATGACATGAACAAAGCCGATGGGACAGAGACTGGTTTAGATTTTTTGTTTGCAGATGCTAAGGCAAGTAATTCAGTGAATACAACTCCAAGTAGAAGCAGTAGACTGTGGTGTTTGAGTAAAGTGCCTTCTGATACTTCTCCTTGA

Protein Analysis

576

Amino Acids

64.43

Weight (kDa)

6.36

Isoelectric Point (pI)

53.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRONE PF03759 136 - 494 1.5e-159 PRONE (Plant-specific Rop nucleotide exchanger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1687
AccII CGCG 1 cut(s) 699
AccIII TCCGGA 1 cut(s) 1431
AciI CCGC 2 cut(s) 697, 1388
AclWI GGATC 2 cut(s) 1238, 1354
AcsI RAATTY 1 cut(s) 428
AcuI CTGAAG 2 cut(s) 713, 834
AfaI GTAC 3 cut(s) 395, 832, 1055
AfeI AGCGCT 1 cut(s) 1296
AfiI CCNNNNNNNGG 3 cut(s) 881, 1025, 1569
AgsI TTSAA 7 cut(s) 204, 292, 946, 983, 1282, 1443, 1462
AjnI CCWGG 2 cut(s) 382, 880
Alw21I GWGCWC 1 cut(s) 543
Alw26I GTCTC 5 cut(s) 312, 749, 1130, 1540, 1607
AlwI GGATC 2 cut(s) 1238, 1354
AlwNI CAGNNNCTG 1 cut(s) 1616
Ama87I CYCGRG 1 cut(s) 1133
Aor13HI TCCGGA 1 cut(s) 1431
Aor51HI AGCGCT 1 cut(s) 1296
ApeKI GCWGC 2 cut(s) 1127, 1197
ApoI RAATTY 1 cut(s) 428
Asp700I GAANNNNTTC 1 cut(s) 972
AspLEI GCGC 2 cut(s) 701, 1297
AsuHPI GGTGA 2 cut(s) 784, 1055
AsuII TTCGAA 1 cut(s) 245
AvaI CYCGRG 1 cut(s) 1133
BanII GRGCYC 1 cut(s) 543
BarI GAAGNNNNNNTAC 2 cut(s) 1696, 1728
BbsI GAAGAC 1 cut(s) 934
Bbv12I GWGCWC 1 cut(s) 543
BbvI GCAGC 2 cut(s) 1139, 1209
BccI CCATC 5 cut(s) 158, 278, 843, 868, 1598
BciT130I CCWGG 2 cut(s) 384, 882
BcoDI GTCTC 5 cut(s) 312, 749, 1130, 1540, 1607
BfaI CTAG 3 cut(s) 231, 1424, 1515
BfmI CTRYAG 1 cut(s) 31
BfoI RGCGCY 1 cut(s) 1298
BisI GCNGC 2 cut(s) 1128, 1198
BlsI GCNGC 2 cut(s) 1129, 1199
Bme1390I CCNGG 2 cut(s) 384, 882
BmeT110I CYCGRG 1 cut(s) 1133
BmiI GGNNCC 2 cut(s) 555, 1117
BmrFI CCNGG 2 cut(s) 384, 882
BmrI ACTGGG 1 cut(s) 471
BmsI GCATC 8 cut(s) 184, 214, 310, 358, 646, 1232, 1339, 1630
BmuI ACTGGG 1 cut(s) 471
BoxI GACNNNNGTC 1 cut(s) 1380
BpiI GAAGAC 1 cut(s) 934
Bpu10I CCTNAGC 3 cut(s) 324, 372, 1644
Bpu14I TTCGAA 1 cut(s) 245
BpuEI CTTGAG 1 cut(s) 695
Bsa29I ATCGAT 1 cut(s) 57
BsaBI GATNNNNATC 1 cut(s) 53
BsaI GGTCTC 2 cut(s) 312, 1540
BsaJI CCNNGG 2 cut(s) 383, 1039
BsaWI WCCGGW 1 cut(s) 1431
Bsc4I CCNNNNNNNGG 3 cut(s) 881, 1025, 1569
Bse1I ACTGG 4 cut(s) 466, 765, 989, 1621
Bse3DI GCAATG 2 cut(s) 1207, 1273
Bse8I GATNNNNATC 1 cut(s) 53
BseAI TCCGGA 1 cut(s) 1431
BseBI CCWGG 2 cut(s) 384, 882
BseCI ATCGAT 1 cut(s) 57
BseDI CCNNGG 2 cut(s) 383, 1039
BseGI GGATG 3 cut(s) 173, 412, 473
BseJI GATNNNNATC 1 cut(s) 53
BseLI CCNNNNNNNGG 3 cut(s) 881, 1025, 1569
BseMI GCAATG 2 cut(s) 1207, 1273
BseMII CTCAG 4 cut(s) 786, 909, 1319, 1533
BseNI ACTGG 4 cut(s) 466, 765, 989, 1621
BseRI GAGGAG 1 cut(s) 174
BseXI GCAGC 2 cut(s) 1139, 1209
BseYI CCCAGC 1 cut(s) 721
BsgI GTGCAG 1 cut(s) 1479
Bsh1236I CGCG 1 cut(s) 699
BshVI ATCGAT 1 cut(s) 57
BsiHKAI GWGCWC 1 cut(s) 543
BsiHKCI CYCGRG 1 cut(s) 1133
BsiSI CCGG 1 cut(s) 1432
BslFI GGGAC 3 cut(s) 623, 1546, 1621
BslI CCNNNNNNNGG 3 cut(s) 881, 1025, 1569
BsmAI GTCTC 5 cut(s) 312, 749, 1130, 1540, 1607
BsmFI GGGAC 3 cut(s) 623, 1546, 1621
BsmI GAATGC 1 cut(s) 1573
Bso31I GGTCTC 2 cut(s) 312, 1540
BsoBI CYCGRG 1 cut(s) 1133
Bsp119I TTCGAA 1 cut(s) 245
Bsp1286I GDGCHC 1 cut(s) 543
Bsp13I TCCGGA 1 cut(s) 1431
Bsp1407I TGTACA 1 cut(s) 1053
Bsp143I GATC 4 cut(s) 668, 1243, 1308, 1359
BspACI CCGC 2 cut(s) 697, 1388
BspCNI CTCAG 4 cut(s) 787, 908, 1318, 1534
BspDI ATCGAT 1 cut(s) 57
BspEI TCCGGA 1 cut(s) 1431
BspFNI CGCG 1 cut(s) 699
BspLI GGNNCC 2 cut(s) 555, 1117
BspPI GGATC 2 cut(s) 1238, 1354
BspQI GCTCTTC 1 cut(s) 732
BspT104I TTCGAA 1 cut(s) 245
BspTNI GGTCTC 2 cut(s) 312, 1540
BsrDI GCAATG 2 cut(s) 1207, 1273
BsrGI TGTACA 1 cut(s) 1053
BsrI ACTGG 4 cut(s) 466, 765, 989, 1621
BssECI CCNNGG 2 cut(s) 383, 1039
BssMI GATC 4 cut(s) 668, 1243, 1308, 1359
Bst2UI CCWGG 2 cut(s) 384, 882
Bst4CI ACNGT 6 cut(s) 278, 398, 1053, 1084, 1141, 1692
Bst6I CTCTTC 3 cut(s) 135, 561, 732
BstAUI TGTACA 1 cut(s) 1053
BstBI TTCGAA 1 cut(s) 245
BstC8I GCNNGC 3 cut(s) 28, 539, 697
BstEII GGTNACC 1 cut(s) 252
BstF5I GGATG 3 cut(s) 173, 412, 473
BstFNI CGCG 1 cut(s) 699
BstH2I RGCGCY 1 cut(s) 1298
BstHHI GCGC 2 cut(s) 701, 1297
BstKTI GATC 4 cut(s) 671, 1246, 1311, 1362
BstMAI GTCTC 5 cut(s) 312, 749, 1130, 1540, 1607
BstMBI GATC 4 cut(s) 668, 1243, 1308, 1359
BstMWI GCNNNNNNNGC 6 cut(s) 862, 871, 956, 1166, 1424, 1515
BstNI CCWGG 2 cut(s) 384, 882
BstNSI RCATGY 1 cut(s) 1127
BstPAI GACNNNNGTC 1 cut(s) 1380
BstPI GGTNACC 1 cut(s) 252
BstSCI CCNGG 2 cut(s) 382, 880
BstSFI CTRYAG 1 cut(s) 31
BstUI CGCG 1 cut(s) 699
BstV1I GCAGC 2 cut(s) 1139, 1209
BstV2I GAAGAC 1 cut(s) 934
BstX2I RGATCY 2 cut(s) 1243, 1359
BstYI RGATCY 2 cut(s) 1243, 1359
Bsu15I ATCGAT 1 cut(s) 57
BsuTUI ATCGAT 1 cut(s) 57
BtgZI GCGATG 2 cut(s) 297, 846
BtsCI GGATG 3 cut(s) 173, 412, 473
BtsIMutI CAGTG 3 cut(s) 459, 758, 1665
Cac8I GCNNGC 3 cut(s) 28, 539, 697
CaiI CAGNNNCTG 1 cut(s) 1616
CfoI GCGC 2 cut(s) 701, 1297
ClaI ATCGAT 1 cut(s) 57
Csp6I GTAC 3 cut(s) 394, 831, 1054
CviAII CATG 5 cut(s) 71, 625, 1124, 1385, 1591
CviQI GTAC 3 cut(s) 394, 831, 1054
DpnI GATC 4 cut(s) 670, 1245, 1310, 1361
DpnII GATC 4 cut(s) 668, 1243, 1308, 1359
Eam1104I CTCTTC 3 cut(s) 135, 561, 732
EarI CTCTTC 3 cut(s) 135, 561, 732
Ecl136II GAGCTC 1 cut(s) 541
Eco24I GRGCYC 1 cut(s) 543
Eco31I GGTCTC 2 cut(s) 312, 1540
Eco47III AGCGCT 1 cut(s) 1296
Eco53kI GAGCTC 1 cut(s) 541
Eco57I CTGAAG 2 cut(s) 713, 834
Eco88I CYCGRG 1 cut(s) 1133
Eco91I GGTNACC 1 cut(s) 252
EcoICRI GAGCTC 1 cut(s) 541
EcoO65I GGTNACC 1 cut(s) 252
EcoRII CCWGG 2 cut(s) 382, 880
EcoT22I ATGCAT 1 cut(s) 199
EcoT38I GRGCYC 1 cut(s) 543
FaeI CATG 5 cut(s) 74, 628, 1127, 1388, 1594
FalI AAGNNNNNCTT 4 cut(s) 10, 42, 1561, 1593
FaqI GGGAC 3 cut(s) 623, 1546, 1621
FatI CATG 5 cut(s) 70, 624, 1123, 1384, 1590
FauI CCCGC 1 cut(s) 704
FauNDI CATATG 2 cut(s) 133, 711
FblI GTMKAC 1 cut(s) 1687
Fnu4HI GCNGC 2 cut(s) 1128, 1198
FokI GGATG 3 cut(s) 180, 419, 480
FriOI GRGCYC 1 cut(s) 543
Fsp4HI GCNGC 2 cut(s) 1128, 1198
FspBI CTAG 3 cut(s) 231, 1424, 1515
GlaI GCGC 2 cut(s) 700, 1296
GluI GCNGC 2 cut(s) 1128, 1198
GsaI CCCAGC 1 cut(s) 725
HaeII RGCGCY 1 cut(s) 1298
HapII CCGG 1 cut(s) 1432
HhaI GCGC 2 cut(s) 701, 1297
Hin1II CATG 5 cut(s) 74, 628, 1127, 1388, 1594
Hin6I GCGC 2 cut(s) 699, 1295
HinP1I GCGC 2 cut(s) 699, 1295
HincII GTYRAC 1 cut(s) 1144
HindII GTYRAC 1 cut(s) 1144
HpaI GTTAAC 1 cut(s) 1144
HpaII CCGG 1 cut(s) 1432
HphI GGTGA 2 cut(s) 784, 1055
Hpy166II GTNNAC 4 cut(s) 394, 775, 1144, 1688
Hpy188I TCNGA 6 cut(s) 690, 732, 796, 1255, 1308, 1717
Hpy8I GTNNAC 4 cut(s) 394, 775, 1144, 1688
Hpy99I CGWCG 1 cut(s) 529
HpyAV CCTTC 8 cut(s) 12, 297, 415, 582, 651, 809, 894, 1722
HpyCH4III ACNGT 6 cut(s) 278, 398, 1053, 1084, 1141, 1692
HpyCH4IV ACGT 1 cut(s) 524
HpyCH4V TGCA 5 cut(s) 197, 1079, 1127, 1496, 1637
HpyF10VI GCNNNNNNNGC 6 cut(s) 862, 871, 956, 1166, 1424, 1515
HpySE526I ACGT 1 cut(s) 524
Hsp92II CATG 5 cut(s) 74, 628, 1127, 1388, 1594
HspAI GCGC 2 cut(s) 699, 1295
Kpn2I TCCGGA 1 cut(s) 1431
KspAI GTTAAC 1 cut(s) 1144
Kzo9I GATC 4 cut(s) 668, 1243, 1308, 1359
LguI GCTCTTC 1 cut(s) 732
LmnI GCTCC 1 cut(s) 1523
Lsp1109I GCAGC 2 cut(s) 1139, 1209
LweI GCATC 8 cut(s) 184, 214, 310, 358, 646, 1232, 1339, 1630
MaeI CTAG 3 cut(s) 231, 1424, 1515
MaeII ACGT 1 cut(s) 524
MaeIII GTNAC 5 cut(s) 252, 457, 508, 1272, 1523
MalI GATC 4 cut(s) 670, 1245, 1310, 1361
MboI GATC 4 cut(s) 668, 1243, 1308, 1359
MflI RGATCY 2 cut(s) 1243, 1359
MhlI GDGCHC 1 cut(s) 543
MluCI AATT 6 cut(s) 428, 548, 750, 908, 1257, 1654
MlyI GAGTC 4 cut(s) 679, 734, 879, 1280
MmeI TCCRAC 2 cut(s) 638, 717
MnlI CCTC 6 cut(s) 36, 152, 238, 1049, 1344, 1560
Mph1103I ATGCAT 1 cut(s) 199
MroI TCCGGA 1 cut(s) 1431
MroXI GAANNNNTTC 1 cut(s) 972
MseI TTAA 3 cut(s) 1143, 1475, 1580
MslI CAYNNNNRTG 4 cut(s) 318, 366, 405, 710
MspI CCGG 1 cut(s) 1432
MspR9I CCNGG 2 cut(s) 384, 882
Mva1269I GAATGC 1 cut(s) 1573
MvaI CCWGG 2 cut(s) 384, 882
MvnI CGCG 1 cut(s) 699
MwoI GCNNNNNNNGC 6 cut(s) 862, 871, 956, 1166, 1424, 1515
NdeI CATATG 2 cut(s) 133, 711
NdeII GATC 4 cut(s) 668, 1243, 1308, 1359
NlaIII CATG 5 cut(s) 74, 628, 1127, 1388, 1594
NlaIV GGNNCC 2 cut(s) 555, 1117
NmeAIII GCCGAG 1 cut(s) 426
NmuCI GTSAC 3 cut(s) 457, 1272, 1523
NsiI ATGCAT 1 cut(s) 199
NspI RCATGY 1 cut(s) 1127
NspV TTCGAA 1 cut(s) 245
PaeR7I CTCGAG 1 cut(s) 1133
PciSI GCTCTTC 1 cut(s) 732
PctI GAATGC 1 cut(s) 1573
PdmI GAANNNNTTC 1 cut(s) 972
PfeI GAWTC 8 cut(s) 179, 715, 764, 1073, 1154, 1420, 1435, 1469
PkrI GCNGC 2 cut(s) 1129, 1199
PleI GAGTC 4 cut(s) 679, 734, 879, 1279
PpsI GAGTC 4 cut(s) 679, 734, 879, 1279
PshAI GACNNNNGTC 1 cut(s) 1380
Psp124BI GAGCTC 1 cut(s) 543
Psp6I CCWGG 2 cut(s) 382, 880
PspEI GGTNACC 1 cut(s) 252
PspFI CCCAGC 1 cut(s) 721
PspGI CCWGG 2 cut(s) 382, 880
PspN4I GGNNCC 2 cut(s) 555, 1117
PstNI CAGNNNCTG 1 cut(s) 1616
PsuI RGATCY 2 cut(s) 1243, 1359
RsaI GTAC 3 cut(s) 395, 832, 1055
RsaNI GTAC 3 cut(s) 394, 831, 1054
RseI CAYNNNNRTG 4 cut(s) 318, 366, 405, 710
SacI GAGCTC 1 cut(s) 543
SapI GCTCTTC 1 cut(s) 732
SaqAI TTAA 3 cut(s) 1143, 1475, 1580
SatI GCNGC 2 cut(s) 1128, 1198
Sau3AI GATC 4 cut(s) 668, 1243, 1308, 1359
SchI GAGTC 4 cut(s) 679, 734, 879, 1280
ScrFI CCNGG 2 cut(s) 384, 882
SduI GDGCHC 1 cut(s) 543
SfaNI GCATC 8 cut(s) 184, 214, 310, 358, 646, 1232, 1339, 1630
SfcI CTRYAG 1 cut(s) 31
Sfr274I CTCGAG 1 cut(s) 1133
SfuI TTCGAA 1 cut(s) 245
SlaI CTCGAG 1 cut(s) 1133
SmiMI CAYNNNNRTG 4 cut(s) 318, 366, 405, 710
SmlI CTYRAG 2 cut(s) 674, 1133
SmoI CTYRAG 2 cut(s) 674, 1133
Sse9I AATT 6 cut(s) 428, 548, 750, 908, 1257, 1654
SsiI CCGC 2 cut(s) 697, 1388
SspMI CTAG 3 cut(s) 231, 1424, 1515
SstI GAGCTC 1 cut(s) 543
StyD4I CCNGG 2 cut(s) 382, 880
TaaI ACNGT 6 cut(s) 278, 398, 1053, 1084, 1141, 1692
TaiI ACGT 1 cut(s) 527
TaqI TCGA 7 cut(s) 57, 63, 157, 245, 527, 1134, 1395
TasI AATT 6 cut(s) 428, 548, 750, 908, 1257, 1654
TatI WGTACW 3 cut(s) 393, 830, 1053
TfiI GAWTC 8 cut(s) 179, 715, 764, 1073, 1154, 1420, 1435, 1469
Tru1I TTAA 3 cut(s) 1143, 1475, 1580
Tru9I TTAA 3 cut(s) 1143, 1475, 1580
TscAI CASTG 3 cut(s) 466, 765, 1665
TseFI GTSAC 3 cut(s) 457, 1272, 1523
TseI GCWGC 2 cut(s) 1127, 1197
Tsp45I GTSAC 3 cut(s) 457, 1272, 1523
TspGWI ACGGA 1 cut(s) 1236
TspRI CASTG 3 cut(s) 466, 765, 1665
XapI RAATTY 1 cut(s) 428
XceI RCATGY 1 cut(s) 1127
XhoI CTCGAG 1 cut(s) 1133
XmiI GTMKAC 1 cut(s) 1687
XmnI GAANNNNTTC 1 cut(s) 972
XspI CTAG 3 cut(s) 231, 1424, 1515
Zsp2I ATGCAT 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.