Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0003201

Physical Location & Seq

Genomic Coordinates Forward (+)

54791898 .. 54792342

Gene Structure 445 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG241100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGGTTGAGCTAGTTCATTCCAGGAAAAATGGTGCTAATGGCCGGACATTAGAGATTATGACTCCGAAAGCTCGTGCAGACATACACATCAATCTTCCAGCACTTAAGAAGTTGGACTCGATGCTTATTGAAACACTTGATTCATTGGTGGTTACTGAGTTTGGGTATGTAGAAGGTGGTAGCAGGGCAGAAGGACGAAACAGAACTCCAGGTCAGAGCAAGAGATGGTGGCTCCCATCACCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010769 GO:0010817 GO:0016020 GO:0016043 GO:0016049 GO:0016324 GO:0017016 GO:0017048 GO:0019899 GO:0022414 GO:0022603 GO:0022604 GO:0030154 GO:0031267 GO:0032092 GO:0032501 GO:0032502 GO:0032879 GO:0032989 GO:0040007 GO:0040008 GO:0043393 GO:0043900 GO:0044093 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0045595 GO:0048468 GO:0048518 GO:0048588 GO:0048589 GO:0048638 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051020 GO:0051049 GO:0051098 GO:0051099 GO:0051128 GO:0051239 GO:0051510 GO:0051704 GO:0060284 GO:0060560 GO:0065007 GO:0065008 GO:0065009 GO:0071840 GO:0071944 GO:0080092 GO:0098590 GO:0098772 GO:1904424 GO:1904426 GO:1904475 GO:1904477 GO:1905097 GO:1905099 GO:2000012 GO:2000241 GO:2001106 GO:2001108

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRONE

Protein Analysis

81

Amino Acids

9.04

Weight (kDa)

9.69

Isoelectric Point (pI)

62.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRONE	PF03759	1 - 81	1.4e-28	PRONE (Plant-specific Rop nucleotide exchanger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31650 AT1G31650
fragaria_vesca	FvH4_5g24650 FvH4_5g24650 FvH4_5g24650
malus_domestica	MD06G1012300.v1.1
prunus_persica	Prupe.5G015000_v2.0.a1 Prupe.5G015000_v2.0.a1 Prupe.5G015000_v2.0.a1 Prupe.5G015000_v2.0.a1
pyrus_communis	pycom06g01030
rosa_chinensis	RchiOBHm_Chr1g0348481 RchiOBHm_Chr3g0483451 RchiOBHm_Chr5g0060521 RchiOBHm_Chr7g0215031
rosa_laevigata	RLG00000002698 RLG00000022617
rosa_multiflora	Rmu_ssc0000134.1_g000066
rosa_roxburghii	Rroxscaffold_3G00244650
rosa_rugosa	Rorug03G0254500 Rorug07G0149700 Rorug07G0149700
rosa_samantha	Rh1AG253100 Rh3AG184200 Rh3AG254500 Rh4AG241100 Rh4CG255300 Rh5AG463000 Rh5BG374200 Rh5CG248600 Rh7AG170100 Rh7AG286600 Rh7BG278100 Rh7CG306000 Rh7DG290100
rosa_wichuraiana	Rw6G016450 Rw7G024440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	40
AflII	CTTAAG	1 cut(s)	104
AgsI	TTSAA	1 cut(s)	131
AjnI	CCWGG	2 cut(s)	20, 208
AluBI	AGCT	2 cut(s)	10, 71
AluI	AGCT	2 cut(s)	10, 71
AoxI	GGCC	1 cut(s)	40
AsuHPI	GGTGA	1 cut(s)	231
BauI	CACGAG	1 cut(s)	72
BccI	CCATC	2 cut(s)	219, 244
BciT130I	CCWGG	2 cut(s)	22, 210
BfaI	CTAG	1 cut(s)	11
BfrI	CTTAAG	1 cut(s)	104
Bme1390I	CCNGG	2 cut(s)	22, 210
BmiI	GGNNCC	1 cut(s)	233
BmrFI	CCNGG	2 cut(s)	22, 210
BmsI	GCATC	1 cut(s)	111
BpmI	CTGGAG	1 cut(s)	192
BseBI	CCWGG	2 cut(s)	22, 210
BseMII	CTCAG	1 cut(s)	147
BsgI	GTGCAG	1 cut(s)	96
BshFI	GGCC	1 cut(s)	42
BsiSI	CCGG	1 cut(s)	43
BsnI	GGCC	1 cut(s)	42
BspANI	GGCC	1 cut(s)	42
BspCNI	CTCAG	1 cut(s)	148
BspLI	GGNNCC	1 cut(s)	233
BspTI	CTTAAG	1 cut(s)	104
BssSI	CACGAG	1 cut(s)	72
Bst2BI	CACGAG	1 cut(s)	72
Bst2UI	CCWGG	2 cut(s)	22, 210
BstAFI	CTTAAG	1 cut(s)	104
BstDEI	CTNAG	2 cut(s)	156, 243
BstNI	CCWGG	2 cut(s)	22, 210
BstSCI	CCNGG	2 cut(s)	20, 208
BsuRI	GGCC	1 cut(s)	42
CviJI	RGCY	4 cut(s)	10, 42, 71, 232
CviKI_1	RGCY	4 cut(s)	10, 42, 71, 232
DdeI	CTNAG	2 cut(s)	156, 243
EaeI	YGGCCR	1 cut(s)	40
EcoRII	CCWGG	2 cut(s)	20, 208
FaiI	YATR	3 cut(s)	59, 83, 168
FspBI	CTAG	1 cut(s)	11
GsuI	CTGGAG	1 cut(s)	192
HaeIII	GGCC	1 cut(s)	42
HapII	CCGG	1 cut(s)	43
HinfI	GANTC	3 cut(s)	61, 116, 140
HpaII	CCGG	1 cut(s)	43
HphI	GGTGA	1 cut(s)	231
Hpy188I	TCNGA	2 cut(s)	66, 216
HpyAV	CCTTC	2 cut(s)	167, 185
HpyCH4V	TGCA	1 cut(s)	77
HpyF3I	CTNAG	2 cut(s)	156, 243
LmnI	GCTCC	1 cut(s)	237
LpnPI	CCDG	7 cut(s)	7, 34, 56, 111, 169, 195, 222
LweI	GCATC	1 cut(s)	111
MaeI	CTAG	1 cut(s)	11
MaeIII	GTNAC	1 cut(s)	151
MboII	GAAGA	1 cut(s)	86
MlyI	GAGTC	2 cut(s)	55, 110
MmeI	TCCRAC	1 cut(s)	93
MseI	TTAA	1 cut(s)	105
MspCI	CTTAAG	1 cut(s)	104
MspI	CCGG	1 cut(s)	43
MspR9I	CCNGG	2 cut(s)	22, 210
MvaI	CCWGG	2 cut(s)	22, 210
NlaIV	GGNNCC	1 cut(s)	233
PfeI	GAWTC	1 cut(s)	140
PfoI	TCCNGGA	1 cut(s)	20
PleI	GAGTC	2 cut(s)	55, 110
PpsI	GAGTC	2 cut(s)	55, 110
Psp6I	CCWGG	2 cut(s)	20, 208
PspGI	CCWGG	2 cut(s)	20, 208
PspN4I	GGNNCC	1 cut(s)	233
SaqAI	TTAA	1 cut(s)	105
SchI	GAGTC	2 cut(s)	55, 110
ScrFI	CCNGG	2 cut(s)	22, 210
SetI	ASST	5 cut(s)	12, 73, 178, 214, 244
SfaNI	GCATC	1 cut(s)	111
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
SspMI	CTAG	1 cut(s)	11
StyD4I	CCNGG	2 cut(s)	20, 208
TaqI	TCGA	1 cut(s)	119
TfiI	GAWTC	1 cut(s)	140
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TspDTI	ATGAA	2 cut(s)	5, 132
Vha464I	CTTAAG	1 cut(s)	104
XspI	CTAG	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.