pycom06g01030

Rop guanine nucleotide exchange factor

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Reverse (-)
1017316 .. 1022388
5073 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g01030.1

Sequence Viewer

Length: 1662 bp
ATGAGGCGAAGACTTGCTTGTTGCACCCGCGACCGGGAGATTAGCATCGACTTTGACGACCAAGAGAGGATAATGACATACAATGGACTTGAAAATTGCATTCTCAGCAGTCAATCTTTTGAAAATGAAAGCAGAACAAGTAGAGGAGATGGCTTTATAAGTGACTCACTGGACGATGATGCATCAACCTGTTCTTCAGGAAAGGATGCTTCTGGATCTTTCTCGTCAAAATGGGTGACGGTGAACAAGGATGAACAAAGTCTTGATGAATGGGATCACTTGGACAGACCCCAGCATTTCTATGTTAACCAAAAACCTGATTATCCGCTTCAGAACTCAGATGTCGAGGCAATGAAAGAAAAATTTGCAAAGCTGTTATTGGGTGAAGATGTCACCGGAGGGAACAAGGGCCTCAGCACTGCACTTGCACTGTCAAATGCCATTACAAACCTAGCAGCAACGATTTTTGGAGAACTGTGGAAACTCGAACCACTACCTGAAGAGAGGAAAAACAAATGGCGACGAGAAATGGACTGGTTTCTTACACCTACAAACTATATGGTTGAGCTGGTTCCTGCCAAGCAAAATGGTGCAAATGGTAGAACACTAGAGATTATGACCCCAAAAGCCCGTGCAGACATACACATGAATCTTCCAGCACTTAAGAAGTTGGACTCCATGCTTATTGACACACTTGAGGCAATGGTCGATACTGAGTTTTGGTATGCAGAAGGAGGTAGCCGGGCAGAAGGGAGGAACAAAATGACATGTCAGAGCAAGAGATGGTGGCTACCAACACCCCAAGTACCAGCTACTGGGCTCTCTGATACAGCTAAAAGGAAATTGCTTAGTCATGGAAGGATAGTGCATCAAGTATTCAAGGCTGCCAGATCTATCAACGAAAGTGTGCTGCTTGAAATGCCTGTGCCAACCATTATCAGGGATGCACTTCCGAAGTCTGGAAAAGCAAGCCTTAGCGAGGAACTGAACAAGGTCTTGACTGCTGAAACAAACTCAGCTGAGGAAATGCTCAATTCACTCAATCTAAAATCCGAGCACAATGCCCTTGAGGTCATTAACAGGCTGGAAGCTGCTGTATTCTCTTGGAAAGAAAGAATCGCGGAACAAGCGAGCAGTAAATCTCCTGCTCGAACATCTTGGTCCTTCATTAAGGACCCTTTATCTGAGATTGATAAGATGGAGTCACTATTGGATCAAGCCGAAGTACTAATACAGCAGCTGAAGACCAAATACCCCAACCTTCCCCAAACTTTTCTAGATGTTACAAAAATCCAATACGGCAAGGATATTGGTCATTCAATTCTGGAAGCATATTCACGAGTACTTGGAAACTTGGCATTCAGCATACTGTCCAGAGTAGGAGATGTTTTGCAAGAAGATGCTTTACACAATCCCGACTCATGTACAGAATCATGTTACTTTCCGGGGACTAGTATCAGCTGTAACTCAAACAGTTACTCATTCATTGATGGCAACAGTGGGGTTCCCCGGCATTCTGATTCTACTTTGGGTAGCATCGTTTTAGAATTTTCATATAATGTAGCAAAAGGTAGCCCTGTGACTGCAACACCAAGCCGATCACGTGTATGGTGCATTGGTAGAGAGGCTTGTGTAAGTGTTTCCCCTACAAACTCCCCTTGA

Protein Analysis

554

Amino Acids

61.64

Weight (kDa)

5.45

Isoelectric Point (pI)

49.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRONE PF03759 113 - 470 2.1e-165 PRONE (Plant-specific Rop nucleotide exchanger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 158
AccB7I CCANNNNNTGG 1 cut(s) 815
AccII CGCG 2 cut(s) 30, 1121
AciI CCGC 3 cut(s) 28, 326, 1121
AclWI GGATC 3 cut(s) 223, 282, 1221
AcsI RAATTY 2 cut(s) 362, 1547
AcuI CTGAAG 4 cut(s) 180, 314, 519, 1262
AcvI CACGTG 1 cut(s) 1604
AfaI GTAC 4 cut(s) 807, 1227, 1344, 1426
AfiI CCNNNNNNNGG 6 cut(s) 33, 34, 815, 939, 959, 979
AflII CTTAAG 1 cut(s) 662
AflIII ACRYGT 2 cut(s) 767, 1603
AgsI TTSAA 5 cut(s) 92, 122, 880, 917, 1320
AhlI ACTAGT 1 cut(s) 1451
AluBI AGCT 8 cut(s) 373, 568, 812, 833, 1019, 1091, 1240, 1461
AluI AGCT 8 cut(s) 373, 568, 812, 833, 1019, 1091, 1240, 1461
Alw21I GWGCWC 1 cut(s) 1059
AlwI GGATC 3 cut(s) 223, 282, 1221
AlwNI CAGNNNCTG 2 cut(s) 815, 1240
AoxI GGCC 1 cut(s) 409
ApeKI GCWGC 5 cut(s) 455, 884, 910, 1091, 1237
ApoI RAATTY 2 cut(s) 362, 1547
AspS9I GGNCC 3 cut(s) 409, 1161, 1174
AsuC2I CCSGG 4 cut(s) 35, 743, 1446, 1510
AsuHPI GGTGA 4 cut(s) 247, 253, 385, 395
AvaII GGWCC 2 cut(s) 1161, 1174
BanII GRGCYC 1 cut(s) 822
BarI GAAGNNNNNNTAC 6 cut(s) 1215, 1235, 1247, 1267, 1389, 1421
BauI CACGAG 1 cut(s) 1338
BbrPI CACGTG 1 cut(s) 1604
BbsI GAAGAC 2 cut(s) 16, 1250
Bbv12I GWGCWC 1 cut(s) 1059
BbvCI CCTCAGC 2 cut(s) 413, 1020
BbvI GCAGC 5 cut(s) 467, 871, 897, 1078, 1249
BccI CCATC 4 cut(s) 143, 777, 1192, 1484
BceAI ACGGC 1 cut(s) 1315
BcgI CGANNNNNNTGC 2 cut(s) 1043, 1077
BcnI CCSGG 4 cut(s) 35, 743, 1446, 1510
BcuI ACTAGT 1 cut(s) 1451
BfaI CTAG 4 cut(s) 452, 608, 1277, 1452
BfrI CTTAAG 1 cut(s) 662
BglII AGATCT 1 cut(s) 890
BisI GCNGC 5 cut(s) 456, 885, 911, 1092, 1238
BlsI GCNGC 5 cut(s) 457, 886, 912, 1093, 1239
BmcAI AGTACT 2 cut(s) 1227, 1344
Bme1390I CCNGG 4 cut(s) 35, 743, 1446, 1510
Bme18I GGWCC 2 cut(s) 1161, 1174
BmgT120I GGNCC 3 cut(s) 409, 1161, 1174
BmiI GGNNCC 3 cut(s) 573, 1176, 1506
BmrFI CCNGG 4 cut(s) 35, 743, 1446, 1510
BmrI ACTGGG 1 cut(s) 825
BmsI GCATC 8 cut(s) 54, 169, 191, 196, 877, 934, 1390, 1545
BmuI ACTGGG 1 cut(s) 825
BpiI GAAGAC 2 cut(s) 16, 1250
Bpu10I CCTNAGC 3 cut(s) 413, 974, 1020
BpuEI CTTGAG 2 cut(s) 716, 1088
BpuMI CCSGG 4 cut(s) 35, 743, 1446, 1510
BsaAI YACGTR 1 cut(s) 1604
BsaBI GATNNNNATC 1 cut(s) 44
BsaJI CCNNGG 2 cut(s) 1445, 1508
BsaWI WCCGGW 1 cut(s) 395
Bsc4I CCNNNNNNNGG 6 cut(s) 33, 34, 815, 939, 959, 979
Bse1I ACTGG 3 cut(s) 174, 539, 820
Bse3DI GCAATG 2 cut(s) 357, 708
Bse8I GATNNNNATC 1 cut(s) 44
BseDI CCNNGG 2 cut(s) 1445, 1508
BseGI GGATG 3 cut(s) 211, 256, 949
BseJI GATNNNNATC 1 cut(s) 44
BseLI CCNNNNNNNGG 6 cut(s) 33, 34, 815, 939, 959, 979
BseMI GCAATG 2 cut(s) 357, 708
BseMII CTCAG 7 cut(s) 118, 351, 427, 705, 1011, 1029, 1176
BseNI ACTGG 3 cut(s) 174, 539, 820
BseRI GAGGAG 1 cut(s) 159
BseXI GCAGC 5 cut(s) 467, 871, 897, 1078, 1249
BseYI CCCAGC 1 cut(s) 291
BsgI GTGCAG 2 cut(s) 405, 654
Bsh1236I CGCG 2 cut(s) 30, 1121
Bsh1285I CGRYCG 1 cut(s) 34
BshFI GGCC 1 cut(s) 411
BsiEI CGRYCG 1 cut(s) 34
BsiHKAI GWGCWC 1 cut(s) 1059
BsiSI CCGG 5 cut(s) 34, 396, 742, 1445, 1510
BslFI GGGAC 1 cut(s) 1462
BslI CCNNNNNNNGG 6 cut(s) 33, 34, 815, 939, 959, 979
BsmFI GGGAC 1 cut(s) 1462
BsmI GAATGC 3 cut(s) 99, 1358, 1513
BsnI GGCC 1 cut(s) 411
Bsp1286I GDGCHC 2 cut(s) 822, 1059
Bsp1407I TGTACA 1 cut(s) 1424
Bsp143I GATC 5 cut(s) 215, 274, 890, 1213, 1598
BspACI CCGC 3 cut(s) 28, 326, 1121
BspANI GGCC 1 cut(s) 411
BspCNI CTCAG 7 cut(s) 117, 350, 426, 706, 1012, 1028, 1177
BspFNI CGCG 2 cut(s) 30, 1121
BspLI GGNNCC 3 cut(s) 573, 1176, 1506
BspPI GGATC 3 cut(s) 223, 282, 1221
BspTI CTTAAG 1 cut(s) 662
BsrDI GCAATG 2 cut(s) 357, 708
BsrGI TGTACA 1 cut(s) 1424
BsrI ACTGG 3 cut(s) 174, 539, 820
BssECI CCNNGG 2 cut(s) 1445, 1508
BssMI GATC 5 cut(s) 215, 274, 890, 1213, 1598
BssSI CACGAG 1 cut(s) 1338
Bst2BI CACGAG 1 cut(s) 1338
Bst4CI ACNGT 6 cut(s) 241, 432, 477, 1371, 1475, 1499
Bst6I CTCTTC 1 cut(s) 495
BstAFI CTTAAG 1 cut(s) 662
BstAUI TGTACA 1 cut(s) 1424
BstBAI YACGTR 1 cut(s) 1604
BstC8I GCNNGC 2 cut(s) 970, 1132
BstDEI CTNAG 9 cut(s) 104, 337, 413, 714, 848, 974, 1015, 1020, 1185
BstENI CCTNNNNNAGG 1 cut(s) 977
BstF5I GGATG 3 cut(s) 211, 256, 949
BstFNI CGCG 2 cut(s) 30, 1121
BstKTI GATC 5 cut(s) 218, 277, 893, 1216, 1601
BstMBI GATC 5 cut(s) 215, 274, 890, 1213, 1598
BstMCI CGRYCG 1 cut(s) 34
BstMWI GCNNNNNNNGC 3 cut(s) 105, 919, 1127
BstNSI RCATGY 1 cut(s) 771
BstSCI CCNGG 4 cut(s) 33, 741, 1444, 1508
BstUI CGCG 2 cut(s) 30, 1121
BstV1I GCAGC 5 cut(s) 467, 871, 897, 1078, 1249
BstV2I GAAGAC 2 cut(s) 16, 1250
BstX2I RGATCY 2 cut(s) 215, 890
BstYI RGATCY 2 cut(s) 215, 890
BsuRI GGCC 1 cut(s) 411
BtsCI GGATG 3 cut(s) 211, 256, 949
BtsI GCAGTG 1 cut(s) 417
BtsIMutI CAGTG 4 cut(s) 167, 417, 428, 1504
Cac8I GCNNGC 2 cut(s) 970, 1132
CaiI CAGNNNCTG 2 cut(s) 815, 1240
Cfr13I GGNCC 3 cut(s) 409, 1161, 1174
Csp6I GTAC 4 cut(s) 806, 1226, 1343, 1425
CviAII CATG 6 cut(s) 646, 679, 768, 854, 1422, 1434
CviQI GTAC 4 cut(s) 806, 1226, 1343, 1425
DdeI CTNAG 9 cut(s) 104, 337, 413, 714, 848, 974, 1015, 1020, 1185
DpnI GATC 5 cut(s) 217, 276, 892, 1215, 1600
DpnII GATC 5 cut(s) 215, 274, 890, 1213, 1598
Eam1104I CTCTTC 1 cut(s) 495
EarI CTCTTC 1 cut(s) 495
Eco24I GRGCYC 1 cut(s) 822
Eco47I GGWCC 2 cut(s) 1161, 1174
Eco57I CTGAAG 4 cut(s) 180, 314, 519, 1262
Eco72I CACGTG 1 cut(s) 1604
EcoNI CCTNNNNNAGG 1 cut(s) 977
EcoO109I RGGNCCY 2 cut(s) 409, 1174
EcoT22I ATGCAT 1 cut(s) 184
EcoT38I GRGCYC 1 cut(s) 822
FaeI CATG 6 cut(s) 649, 682, 771, 857, 1425, 1437
FalI AAGNNNNNCTT 3 cut(s) 33, 957, 989
FaqI GGGAC 1 cut(s) 1462
FatI CATG 6 cut(s) 645, 678, 767, 853, 1421, 1433
FauI CCCGC 1 cut(s) 35
Fnu4HI GCNGC 5 cut(s) 456, 885, 911, 1092, 1238
FokI GGATG 3 cut(s) 218, 263, 956
FriOI GRGCYC 1 cut(s) 822
Fsp4HI GCNGC 5 cut(s) 456, 885, 911, 1092, 1238
FspBI CTAG 4 cut(s) 452, 608, 1277, 1452
GluI GCNGC 5 cut(s) 456, 885, 911, 1092, 1238
GsaI CCCAGC 1 cut(s) 295
HaeIII GGCC 1 cut(s) 411
HapII CCGG 5 cut(s) 34, 396, 742, 1445, 1510
Hin1II CATG 6 cut(s) 649, 682, 771, 857, 1425, 1437
HincII GTYRAC 1 cut(s) 307
HindII GTYRAC 1 cut(s) 307
HinfI GANTC 8 cut(s) 164, 649, 674, 1116, 1202, 1418, 1430, 1520
HpaI GTTAAC 1 cut(s) 307
HpaII CCGG 5 cut(s) 34, 396, 742, 1445, 1510
HphI GGTGA 4 cut(s) 247, 253, 385, 395
Hpy166II GTNNAC 2 cut(s) 244, 307
Hpy188I TCNGA 8 cut(s) 333, 340, 774, 826, 954, 1054, 1186, 1519
Hpy8I GTNNAC 2 cut(s) 244, 307
Hpy99I CGWCG 1 cut(s) 525
HpyAV CCTTC 5 cut(s) 725, 743, 852, 1174, 1271
HpyCH4III ACNGT 6 cut(s) 241, 432, 477, 1371, 1475, 1499
HpyCH4IV ACGT 1 cut(s) 1603
HpyF10VI GCNNNNNNNGC 3 cut(s) 105, 919, 1127
HpyF3I CTNAG 9 cut(s) 104, 337, 413, 714, 848, 974, 1015, 1020, 1185
HpySE526I ACGT 1 cut(s) 1603
Hsp92II CATG 6 cut(s) 649, 682, 771, 857, 1425, 1437
KspAI GTTAAC 1 cut(s) 307
Kzo9I GATC 5 cut(s) 215, 274, 890, 1213, 1598
Lsp1109I GCAGC 5 cut(s) 467, 871, 897, 1078, 1249
LweI GCATC 8 cut(s) 54, 169, 191, 196, 877, 934, 1390, 1545
MaeI CTAG 4 cut(s) 452, 608, 1277, 1452
MaeII ACGT 1 cut(s) 1603
MaeIII GTNAC 9 cut(s) 161, 235, 391, 1203, 1282, 1436, 1463, 1475, 1579
MalI GATC 5 cut(s) 217, 276, 892, 1215, 1600
MboI GATC 5 cut(s) 215, 274, 890, 1213, 1598
MboII GAAGA 7 cut(s) 21, 186, 398, 512, 644, 1255, 1409
MflI RGATCY 2 cut(s) 215, 890
MhlI GDGCHC 2 cut(s) 822, 1059
MluCI AATT 6 cut(s) 94, 362, 842, 1033, 1320, 1547
MlyI GAGTC 4 cut(s) 158, 668, 1211, 1412
MmeI TCCRAC 1 cut(s) 651
Mph1103I ATGCAT 1 cut(s) 184
MseI TTAA 4 cut(s) 306, 663, 1077, 1170
MslI CAYNNNNRTG 3 cut(s) 300, 644, 1606
MspA1I CMGCKG 3 cut(s) 1019, 1240, 1461
MspCI CTTAAG 1 cut(s) 662
MspI CCGG 5 cut(s) 34, 396, 742, 1445, 1510
MspR9I CCNGG 4 cut(s) 35, 743, 1446, 1510
Mva1269I GAATGC 3 cut(s) 99, 1358, 1513
MvnI CGCG 2 cut(s) 30, 1121
MwoI GCNNNNNNNGC 3 cut(s) 105, 919, 1127
NciI CCSGG 4 cut(s) 35, 743, 1446, 1510
NdeII GATC 5 cut(s) 215, 274, 890, 1213, 1598
NlaIII CATG 6 cut(s) 649, 682, 771, 857, 1425, 1437
NlaIV GGNNCC 3 cut(s) 573, 1176, 1506
NmuCI GTSAC 5 cut(s) 161, 235, 391, 1203, 1579
NsiI ATGCAT 1 cut(s) 184
NspI RCATGY 1 cut(s) 771
PciI ACATGT 1 cut(s) 767
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PctI GAATGC 3 cut(s) 99, 1358, 1513
PfeI GAWTC 4 cut(s) 649, 1116, 1430, 1520
PflMI CCANNNNNTGG 1 cut(s) 815
PkrI GCNGC 5 cut(s) 457, 886, 912, 1093, 1239
PleI GAGTC 4 cut(s) 158, 668, 1210, 1412
PmaCI CACGTG 1 cut(s) 1604
PmlI CACGTG 1 cut(s) 1604
PpsI GAGTC 4 cut(s) 158, 668, 1210, 1412
Ppu21I YACGTR 1 cut(s) 1604
PpuMI RGGWCCY 1 cut(s) 1174
PscI ACATGT 1 cut(s) 767
PsiI TTATAA 1 cut(s) 158
Psp5II RGGWCCY 1 cut(s) 1174
PspCI CACGTG 1 cut(s) 1604
PspFI CCCAGC 1 cut(s) 291
PspN4I GGNNCC 3 cut(s) 573, 1176, 1506
PspPI GGNCC 3 cut(s) 409, 1161, 1174
PspPPI RGGWCCY 1 cut(s) 1174
PstNI CAGNNNCTG 2 cut(s) 815, 1240
PsuI RGATCY 2 cut(s) 215, 890
PvuII CAGCTG 3 cut(s) 1019, 1240, 1461
RsaI GTAC 4 cut(s) 807, 1227, 1344, 1426
RsaNI GTAC 4 cut(s) 806, 1226, 1343, 1425
RseI CAYNNNNRTG 3 cut(s) 300, 644, 1606
SaqAI TTAA 4 cut(s) 306, 663, 1077, 1170
SatI GCNGC 5 cut(s) 456, 885, 911, 1092, 1238
Sau3AI GATC 5 cut(s) 215, 274, 890, 1213, 1598
Sau96I GGNCC 3 cut(s) 409, 1161, 1174
ScaI AGTACT 2 cut(s) 1227, 1344
SchI GAGTC 4 cut(s) 158, 668, 1211, 1412
ScrFI CCNGG 4 cut(s) 35, 743, 1446, 1510
SduI GDGCHC 2 cut(s) 822, 1059
SfaNI GCATC 8 cut(s) 54, 169, 191, 196, 877, 934, 1390, 1545
SinI GGWCC 2 cut(s) 1161, 1174
SmiMI CAYNNNNRTG 3 cut(s) 300, 644, 1606
SmlI CTYRAG 3 cut(s) 662, 695, 1067
SmoI CTYRAG 3 cut(s) 662, 695, 1067
SpeI ACTAGT 1 cut(s) 1451
Sse9I AATT 6 cut(s) 94, 362, 842, 1033, 1320, 1547
SsiI CCGC 3 cut(s) 28, 326, 1121
SspMI CTAG 4 cut(s) 452, 608, 1277, 1452
StyD4I CCNGG 4 cut(s) 33, 741, 1444, 1508
TaaI ACNGT 6 cut(s) 241, 432, 477, 1371, 1475, 1499
TaiI ACGT 1 cut(s) 1606
TaqI TCGA 5 cut(s) 48, 345, 486, 708, 1150
TasI AATT 6 cut(s) 94, 362, 842, 1033, 1320, 1547
TatI WGTACW 3 cut(s) 1225, 1342, 1424
TfiI GAWTC 4 cut(s) 649, 1116, 1430, 1520
Tru1I TTAA 4 cut(s) 306, 663, 1077, 1170
Tru9I TTAA 4 cut(s) 306, 663, 1077, 1170
TscAI CASTG 4 cut(s) 174, 424, 435, 1504
TseFI GTSAC 5 cut(s) 161, 235, 391, 1203, 1579
TseI GCWGC 5 cut(s) 455, 884, 910, 1091, 1237
Tsp45I GTSAC 5 cut(s) 161, 235, 391, 1203, 1579
TspDTI ATGAA 8 cut(s) 141, 267, 282, 368, 662, 1156, 1474, 1542
TspRI CASTG 4 cut(s) 174, 424, 435, 1504
Van91I CCANNNNNTGG 1 cut(s) 815
Vha464I CTTAAG 1 cut(s) 662
VpaK11BI GGWCC 2 cut(s) 1161, 1174
XagI CCTNNNNNAGG 1 cut(s) 977
XapI RAATTY 2 cut(s) 362, 1547
XbaI TCTAGA 1 cut(s) 1276
XceI RCATGY 1 cut(s) 771
XspI CTAG 4 cut(s) 452, 608, 1277, 1452
ZrmI AGTACT 2 cut(s) 1227, 1344
Zsp2I ATGCAT 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.