Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0011370

Physical Location & Seq

Genomic Coordinates Forward (+)

25863812 .. 25869793

Gene Structure 5982 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG278300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGGTTTGGCGAGATTTGGGCGTCCGAAGGGAGCACCAGAAGGGCAGTTGAGCCCCAACCTGTTCGTTGCCAACTGTGGGCCCGCCGTGGGACTATCCCACGACGCCATTGCTTCGGCGTTTGGGGCCTTCGGTCAAGTCAGAGGCGTCTACGCCGCGGACGACACCGGTGCTCGTGTCGTTGTCTCCTTTGCTGAAGAGGCCTCTGCCCAGAACGCCTTGAATGCGTTGCATGGCCGCCCTTGTGCTCACCTCGGGGGTCGTACCTTGCACATTCGCTATTCTGTTCTTCAACCCACCTCACTGGGTCGAGTCAATGACTCTGTGGAAGTATCTTTACTGGATTCTGAGTTGAATATTCCTGGCCTTTACTTATTCCATGATTTTGTCACGGCTGAAGAAGAGGAGGAGCTCCTTGCAGCAGTTGATGAAAGGCCTTGGAAAAATCTTGCAAAAAGAAGGGTTCAGCATTATGGCTATGAATTTTGTTATGAGACAAGGAATGTTGATTCTAAGAAGAATTTAGGTGCATTTCCAGCATTTGTTCCCCCTATACTTGAAAGAATATCTATGCTTCCGAAGCGCGAGGATGTTGAAACTATAGCTTTGGACCAATTAACGGGCCTTGCATCATGGAGTTCAGAAGATACTTTGAAGGTGACCGGCCACCTAGAACTTCCTCAAGTATTGATATCGAAACGGAAAATTCTGAAAACAATTCAAATTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0001510 GO:0002097 GO:0002098 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0008198 GO:0008270 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016300 GO:0016491 GO:0016705 GO:0016706 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0051213 GO:0055114 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy_2

Protein Analysis

243

Amino Acids

26.55

Weight (kDa)

5.99

Isoelectric Point (pI)

39.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31600 AT1G31600 AT1G31600 AT1G31600
fragaria_vesca	FvH4_5g24670 FvH4_5g24670 FvH4_5g24670
malus_domestica	MD06G1012100.v1.1
prunus_persica	Prupe.5G014800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0215051
rosa_laevigata	RLG00000002696
rosa_multiflora	Rmu_sc0016046.1_g000004
rosa_roxburghii	Rroxscaffold_3G00244630
rosa_rugosa	Rorug07G0149700 Rorug07G0149800
rosa_samantha	Rh7AG286800 Rh7BG278300 Rh7CG306200 Rh7DG290300
rosa_wichuraiana	Rw7G024460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	150
AccII	CGCG	2 cut(s)	158, 585
AciI	CCGC	4 cut(s)	84, 156, 158, 238
AcoI	YGGCCR	2 cut(s)	235, 664
AcsI	RAATTY	4 cut(s)	482, 520, 705, 723
AcuI	CTGAAG	2 cut(s)	216, 417
AcyI	GRCGYC	3 cut(s)	22, 105, 147
AfaI	GTAC	1 cut(s)	265
AfiI	CCNNNNNNNGG	3 cut(s)	78, 89, 619
AgeI	ACCGGT	1 cut(s)	167
AgsI	TTSAA	7 cut(s)	223, 293, 355, 560, 596, 655, 722
AjnI	CCWGG	1 cut(s)	361
AluBI	AGCT	2 cut(s)	412, 605
AluI	AGCT	2 cut(s)	412, 605
Alw21I	GWGCWC	4 cut(s)	37, 175, 250, 414
Alw26I	GTCTC	2 cut(s)	190, 488
Ama87I	CYCGRG	1 cut(s)	254
AoxI	GGCC	8 cut(s)	80, 126, 201, 235, 364, 434, 622, 664
ApaI	GGGCCC	1 cut(s)	84
ApeKI	GCWGC	1 cut(s)	419
ApoI	RAATTY	4 cut(s)	482, 520, 705, 723
AsiGI	ACCGGT	1 cut(s)	167
AspLEI	GCGC	1 cut(s)	585
AspS9I	GGNCC	5 cut(s)	80, 81, 126, 610, 622
AsuHPI	GGTGA	2 cut(s)	242, 670
AvaI	CYCGRG	1 cut(s)	254
AvaII	GGWCC	1 cut(s)	610
BaeGI	GKGCMC	1 cut(s)	84
BanII	GRGCYC	3 cut(s)	56, 84, 414
BarI	GAAGNNNNNNTAC	2 cut(s)	321, 353
BauI	CACGAG	1 cut(s)	174
Bbv12I	GWGCWC	4 cut(s)	37, 175, 250, 414
BbvI	GCAGC	1 cut(s)	431
BceAI	ACGGC	2 cut(s)	71, 408
BcgI	CGANNNNNNTGC	4 cut(s)	92, 126, 152, 186
BciT130I	CCWGG	1 cut(s)	363
BcoDI	GTCTC	2 cut(s)	190, 488
BfaI	CTAG	1 cut(s)	671
BfmI	CTRYAG	1 cut(s)	600
BisI	GCNGC	3 cut(s)	156, 238, 420
BlsI	GCNGC	3 cut(s)	157, 239, 421
Bme1390I	CCNGG	1 cut(s)	363
Bme18I	GGWCC	1 cut(s)	610
BmeT110I	CYCGRG	1 cut(s)	254
BmgT120I	GGNCC	5 cut(s)	80, 81, 126, 610, 622
BmiI	GGNNCC	2 cut(s)	82, 127
BmrFI	CCNGG	1 cut(s)	363
BmrI	ACTGGG	1 cut(s)	314
BmsI	GCATC	1 cut(s)	638
BmuI	ACTGGG	1 cut(s)	314
BpuEI	CTTGAG	1 cut(s)	666
BsaHI	GRCGYC	3 cut(s)	22, 105, 147
BsaJI	CCNNGG	4 cut(s)	87, 156, 253, 437
BsaWI	WCCGGW	1 cut(s)	167
Bsc4I	CCNNNNNNNGG	3 cut(s)	78, 89, 619
Bse118I	RCCGGY	2 cut(s)	167, 662
Bse1I	ACTGG	2 cut(s)	309, 345
Bse3DI	GCAATG	1 cut(s)	108
BseBI	CCWGG	1 cut(s)	363
BseDI	CCNNGG	4 cut(s)	87, 156, 253, 437
BseGI	GGATG	1 cut(s)	595
BseLI	CCNNNNNNNGG	3 cut(s)	78, 89, 619
BseMI	GCAATG	1 cut(s)	108
BseMII	CTCAG	1 cut(s)	339
BseNI	ACTGG	2 cut(s)	309, 345
BseRI	GAGGAG	2 cut(s)	419, 422
BseSI	GKGCMC	1 cut(s)	84
BseXI	GCAGC	1 cut(s)	431
Bsh1236I	CGCG	2 cut(s)	158, 585
BshFI	GGCC	8 cut(s)	82, 128, 203, 237, 366, 436, 624, 666
BshTI	ACCGGT	1 cut(s)	167
BsiHKAI	GWGCWC	4 cut(s)	37, 175, 250, 414
BsiHKCI	CYCGRG	1 cut(s)	254
BsiSI	CCGG	2 cut(s)	168, 663
BslFI	GGGAC	1 cut(s)	105
BslI	CCNNNNNNNGG	3 cut(s)	78, 89, 619
BsmAI	GTCTC	2 cut(s)	190, 488
BsmFI	GGGAC	1 cut(s)	105
BsmI	GAATGC	1 cut(s)	229
BsnI	GGCC	8 cut(s)	82, 128, 203, 237, 366, 436, 624, 666
BsoBI	CYCGRG	1 cut(s)	254
Bsp120I	GGGCCC	1 cut(s)	80
Bsp1286I	GDGCHC	6 cut(s)	37, 56, 84, 175, 250, 414
BspACI	CCGC	4 cut(s)	84, 156, 158, 238
BspANI	GGCC	8 cut(s)	82, 128, 203, 237, 366, 436, 624, 666
BspCNI	CTCAG	1 cut(s)	340
BspFNI	CGCG	2 cut(s)	158, 585
BspLI	GGNNCC	2 cut(s)	82, 127
BsrDI	GCAATG	1 cut(s)	108
BsrFI	RCCGGY	2 cut(s)	167, 662
BsrI	ACTGG	2 cut(s)	309, 345
BssAI	RCCGGY	2 cut(s)	167, 662
BssECI	CCNNGG	4 cut(s)	87, 156, 253, 437
BssNI	GRCGYC	3 cut(s)	22, 105, 147
BssSI	CACGAG	1 cut(s)	174
BssT1I	CCWWGG	1 cut(s)	437
Bst2BI	CACGAG	1 cut(s)	174
Bst2UI	CCWGG	1 cut(s)	363
Bst4CI	ACNGT	1 cut(s)	77
Bst6I	CTCTTC	2 cut(s)	192, 396
BstACI	GRCGYC	3 cut(s)	22, 105, 147
BstC8I	GCNNGC	1 cut(s)	84
BstDEI	CTNAG	2 cut(s)	348, 513
BstDSI	CCRYGG	2 cut(s)	87, 156
BstEII	GGTNACC	1 cut(s)	658
BstF5I	GGATG	1 cut(s)	595
BstFNI	CGCG	2 cut(s)	158, 585
BstHHI	GCGC	1 cut(s)	585
BstMAI	GTCTC	2 cut(s)	190, 488
BstMWI	GCNNNNNNNGC	6 cut(s)	125, 200, 215, 224, 536, 580
BstNI	CCWGG	1 cut(s)	363
BstPI	GGTNACC	1 cut(s)	658
BstSCI	CCNGG	1 cut(s)	361
BstSFI	CTRYAG	1 cut(s)	600
BstSLI	GKGCMC	1 cut(s)	84
BstUI	CGCG	2 cut(s)	158, 585
BstV1I	GCAGC	1 cut(s)	431
BstXI	CCANNNNNNTGG	1 cut(s)	304
BsuRI	GGCC	8 cut(s)	82, 128, 203, 237, 366, 436, 624, 666
BtgI	CCRYGG	2 cut(s)	87, 156
BtsCI	GGATG	1 cut(s)	595
BtsIMutI	CAGTG	1 cut(s)	302
Cac8I	GCNNGC	1 cut(s)	84
CfoI	GCGC	1 cut(s)	585
Cfr10I	RCCGGY	2 cut(s)	167, 662
Cfr13I	GGNCC	5 cut(s)	80, 81, 126, 610, 622
Cfr42I	CCGCGG	1 cut(s)	159
CseI	GACGC	3 cut(s)	11, 113, 136
Csp6I	GTAC	1 cut(s)	264
CspAI	ACCGGT	1 cut(s)	167
CviAII	CATG	3 cut(s)	233, 380, 633
CviQI	GTAC	1 cut(s)	264
DdeI	CTNAG	2 cut(s)	348, 513
EaeI	YGGCCR	2 cut(s)	235, 664
Eam1104I	CTCTTC	2 cut(s)	192, 396
EarI	CTCTTC	2 cut(s)	192, 396
Ecl136II	GAGCTC	1 cut(s)	412
Eco130I	CCWWGG	1 cut(s)	437
Eco147I	AGGCCT	2 cut(s)	203, 436
Eco24I	GRGCYC	3 cut(s)	56, 84, 414
Eco32I	GATATC	1 cut(s)	693
Eco47I	GGWCC	1 cut(s)	610
Eco53kI	GAGCTC	1 cut(s)	412
Eco57I	CTGAAG	2 cut(s)	216, 417
Eco88I	CYCGRG	1 cut(s)	254
Eco91I	GGTNACC	1 cut(s)	658
EcoICRI	GAGCTC	1 cut(s)	412
EcoO109I	RGGNCCY	1 cut(s)	126
EcoO65I	GGTNACC	1 cut(s)	658
EcoRII	CCWGG	1 cut(s)	361
EcoRV	GATATC	1 cut(s)	693
EcoT14I	CCWWGG	1 cut(s)	437
EcoT38I	GRGCYC	3 cut(s)	56, 84, 414
ErhI	CCWWGG	1 cut(s)	437
FaeI	CATG	3 cut(s)	236, 383, 636
FaiI	YATR	9 cut(s)	234, 381, 474, 480, 492, 554, 572, 602, 634
FaqI	GGGAC	1 cut(s)	105
FatI	CATG	3 cut(s)	232, 379, 632
FauI	CCCGC	1 cut(s)	91
FblI	GTMKAC	1 cut(s)	150
Fnu4HI	GCNGC	3 cut(s)	156, 238, 420
FokI	GGATG	1 cut(s)	602
FriOI	GRGCYC	3 cut(s)	56, 84, 414
Fsp4HI	GCNGC	3 cut(s)	156, 238, 420
FspBI	CTAG	1 cut(s)	671
GlaI	GCGC	1 cut(s)	584
GluI	GCNGC	3 cut(s)	156, 238, 420
HaeIII	GGCC	8 cut(s)	82, 128, 203, 237, 366, 436, 624, 666
HapII	CCGG	2 cut(s)	168, 663
HgaI	GACGC	3 cut(s)	11, 113, 136
HhaI	GCGC	1 cut(s)	585
Hin1I	GRCGYC	3 cut(s)	22, 105, 147
Hin1II	CATG	3 cut(s)	236, 383, 636
Hin6I	GCGC	1 cut(s)	583
HinP1I	GCGC	1 cut(s)	583
HinfI	GANTC	4 cut(s)	312, 320, 344, 509
HpaII	CCGG	2 cut(s)	168, 663
HphI	GGTGA	2 cut(s)	242, 670
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	6 cut(s)	27, 143, 349, 579, 643, 711
Hpy8I	GTNNAC	1 cut(s)	151
Hpy99I	CGWCG	1 cut(s)	107
HpyAV	CCTTC	5 cut(s)	22, 35, 139, 453, 649
HpyCH4III	ACNGT	1 cut(s)	77
HpyCH4V	TGCA	6 cut(s)	232, 271, 419, 452, 530, 629
HpyF10VI	GCNNNNNNNGC	6 cut(s)	125, 200, 215, 224, 536, 580
HpyF3I	CTNAG	2 cut(s)	348, 513
Hsp92I	GRCGYC	3 cut(s)	22, 105, 147
Hsp92II	CATG	3 cut(s)	236, 383, 636
HspAI	GCGC	1 cut(s)	583
KspI	CCGCGG	1 cut(s)	159
LmnI	GCTCC	3 cut(s)	32, 409, 417
Lsp1109I	GCAGC	1 cut(s)	431
LweI	GCATC	1 cut(s)	638
MaeI	CTAG	1 cut(s)	671
MaeIII	GTNAC	2 cut(s)	388, 658
MboII	GAAGA	6 cut(s)	209, 281, 410, 413, 529, 656
MhlI	GDGCHC	6 cut(s)	37, 56, 84, 175, 250, 414
MluCI	AATT	6 cut(s)	482, 520, 614, 705, 717, 723
MlyI	GAGTC	2 cut(s)	314, 321
MnlI	CCTC	9 cut(s)	137, 193, 214, 263, 310, 397, 400, 580, 690
MseI	TTAA	2 cut(s)	617, 730
MspA1I	CMGCKG	1 cut(s)	158
MspI	CCGG	2 cut(s)	168, 663
MspR9I	CCNGG	1 cut(s)	363
Mva1269I	GAATGC	1 cut(s)	229
MvaI	CCWGG	1 cut(s)	363
MvnI	CGCG	2 cut(s)	158, 585
MwoI	GCNNNNNNNGC	6 cut(s)	125, 200, 215, 224, 536, 580
NlaIII	CATG	3 cut(s)	236, 383, 636
NlaIV	GGNNCC	2 cut(s)	82, 127
NmuCI	GTSAC	2 cut(s)	388, 658
PceI	AGGCCT	2 cut(s)	203, 436
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PctI	GAATGC	1 cut(s)	229
PfeI	GAWTC	2 cut(s)	344, 509
PinAI	ACCGGT	1 cut(s)	167
PkrI	GCNGC	3 cut(s)	157, 239, 421
PleI	GAGTC	2 cut(s)	314, 320
PpsI	GAGTC	2 cut(s)	314, 320
Psp124BI	GAGCTC	1 cut(s)	414
Psp6I	CCWGG	1 cut(s)	361
PspEI	GGTNACC	1 cut(s)	658
PspGI	CCWGG	1 cut(s)	361
PspN4I	GGNNCC	2 cut(s)	82, 127
PspOMI	GGGCCC	1 cut(s)	80
PspPI	GGNCC	5 cut(s)	80, 81, 126, 610, 622
RsaI	GTAC	1 cut(s)	265
RsaNI	GTAC	1 cut(s)	264
SacI	GAGCTC	1 cut(s)	414
SacII	CCGCGG	1 cut(s)	159
SaqAI	TTAA	2 cut(s)	617, 730
SatI	GCNGC	3 cut(s)	156, 238, 420
Sau96I	GGNCC	5 cut(s)	80, 81, 126, 610, 622
SchI	GAGTC	2 cut(s)	314, 321
ScrFI	CCNGG	1 cut(s)	363
SduI	GDGCHC	6 cut(s)	37, 56, 84, 175, 250, 414
SetI	ASST	9 cut(s)	63, 255, 269, 302, 414, 529, 607, 660, 672
SfaNI	GCATC	1 cut(s)	638
SfcI	CTRYAG	1 cut(s)	600
Sfr303I	CCGCGG	1 cut(s)	159
SgrAI	CRCCGGYG	1 cut(s)	167
SgrBI	CCGCGG	1 cut(s)	159
SinI	GGWCC	1 cut(s)	610
SmlI	CTYRAG	1 cut(s)	681
SmoI	CTYRAG	1 cut(s)	681
Sse9I	AATT	6 cut(s)	482, 520, 614, 705, 717, 723
SseBI	AGGCCT	2 cut(s)	203, 436
SsiI	CCGC	4 cut(s)	84, 156, 158, 238
SspI	AATATT	1 cut(s)	358
SspMI	CTAG	1 cut(s)	671
SstI	GAGCTC	1 cut(s)	414
StuI	AGGCCT	2 cut(s)	203, 436
StyD4I	CCNGG	1 cut(s)	361
StyI	CCWWGG	1 cut(s)	437
TaaI	ACNGT	1 cut(s)	77
TaqI	TCGA	2 cut(s)	310, 695
TaqII	GACCGA	1 cut(s)	122
TasI	AATT	6 cut(s)	482, 520, 614, 705, 717, 723
TauI	GCSGC	2 cut(s)	158, 240
TfiI	GAWTC	2 cut(s)	344, 509
Tru1I	TTAA	2 cut(s)	617, 730
Tru9I	TTAA	2 cut(s)	617, 730
TscAI	CASTG	1 cut(s)	309
TseFI	GTSAC	2 cut(s)	388, 658
TseI	GCWGC	1 cut(s)	419
Tsp45I	GTSAC	2 cut(s)	388, 658
TspDTI	ATGAA	2 cut(s)	444, 495
TspGWI	ACGGA	1 cut(s)	715
TspRI	CASTG	1 cut(s)	309
VpaK11BI	GGWCC	1 cut(s)	610
XapI	RAATTY	4 cut(s)	482, 520, 705, 723
XmiI	GTMKAC	1 cut(s)	150
XspI	CTAG	1 cut(s)	671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.