Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011370

Physical Location & Seq

Genomic Coordinates Reverse (-)

11312961 .. 11316582

Gene Structure 3622 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G31600.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

ATGGGCTGGCCATGGGCTGACCATTGGACAATGGTCCTTAATGGTCTTGGACAAATTTTCAGACCATTGTCCATTAAGGACCAACCATTAGAACCCATGAAAAAAATGTTCCAAGTGGACATGACCATTGGACTTTGGACAGCCCAATTGACACTTCTAACTCAAGTAAACGTCATCGTTTTTTTCATTGAACATATCGGCGAAGATACCTCGCCGTTATACGATCGGAGAAAGTTACAGTCTTTTATTCCGAGAATGGTTCAGCCGCGATTCGTCCGTCCGACGCAATCATCGCCATCTTCCATTTCTGGAGAACCAAATTCATCAAATCTATACGTCGCGAATTGTGGACCGGCGGTTGGACTAACACACAACGCAATCGCGGCGGTGTTCGCTGAGTTCGGTGAAGTAAACGGAGTCTACGCGGCGGATGATAGCGGCGTTCGTGTTATCGTCTCTTTCGCTGATCCCTTCTCCGCGAAAGCAGCTCTAGAAGCTTTGAGTGGTCGACCATGTCCTGACCTTAAAGGACGTTCTTTGCATATTCGATATTCAGTTCTTCAATTACCTTCCGAGACGCAGGTGAATGATTGTGTTCCAGTGTCTTTGATTGATTCAGAGTTGAATATTCCAGGGCTTTTCTTGTTACCTGATTTTGTCACTGTGGCAGAAGAACAGCAATTGCTTGCAGCTGTTGATGCTCGACATTGGATTGGTCTTGCTAAACGGCGTGTTCAACACTATGGATATGAGTTTTGTTACGGGACAAGAAATGTTGATACCAAAAAGCGTCTCGGTGAGCTTCCGTCGTTTGTTTCTCCTATACTTGAAAGAATCTATTTGTTCCCGAACTTTGACAACGGCTCAGCAAGCTTGAATTTGGACCAGTTAACGGTAAATGAGTACCCATCTGGTGTGGGATTATCGCCTCATATTGATACACATTCAGCATTTGAAGATTGCATATTCAGCCTTTCTTTAGCTGGTCCTTGTATTATGGAATTCAGAAGATACTCTGTTTCCACATGGAAAGCCTCAACTACCGATGCTGAGAAGTCGGGTGACTCCTCTTGCATCAAAAAGGCCTTATATCTTCCTCCTCGGTCTATGCTCTTATTATCCGGTGAAGCACGATATGCTTGGAATCACTACATTCCACATCACAAGATTGACAAGGTGAAGGATAAAGTGATCAGAAGAAGTTCTAGAAGGGTATCTTTCACATTACGGAAGGTGAGAAATCATCCTTGCAGTTGTAAGTATCCACAATACTGTGACTCTCAGCAACAAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0001510 GO:0002097 GO:0002098 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0008198 GO:0008270 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016300 GO:0016491 GO:0016705 GO:0016706 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0051213 GO:0055114 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy_2

Protein Analysis

431

Amino Acids

48.39

Weight (kDa)

8.25

Isoelectric Point (pI)

49.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy_2	PF13532	168 - 325	3.6e-14	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31600 AT1G31600 AT1G31600 AT1G31600
fragaria_vesca	FvH4_5g24670 FvH4_5g24670 FvH4_5g24670
malus_domestica	MD06G1012100.v1.1
prunus_persica	Prupe.5G014800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0215051
rosa_laevigata	RLG00000002696
rosa_multiflora	Rmu_sc0016046.1_g000004
rosa_roxburghii	Rroxscaffold_3G00244630
rosa_rugosa	Rorug07G0149700 Rorug07G0149800
rosa_samantha	Rh7AG286800 Rh7BG278300 Rh7CG306200 Rh7DG290300
rosa_wichuraiana	Rw7G024460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	571
Acc36I	ACCTGC	1 cut(s)	571
AccI	GTMKAC	2 cut(s)	420, 508
AccII	CGCG	5 cut(s)	268, 341, 383, 425, 479
AciI	CCGC	8 cut(s)	266, 356, 383, 386, 425, 428, 438, 477
AclWI	GGATC	1 cut(s)	461
AcoI	YGGCCR	1 cut(s)	8
AcsI	RAATTY	4 cut(s)	54, 319, 877, 1001
AfaI	GTAC	1 cut(s)	905
AfiI	CCNNNNNNNGG	2 cut(s)	359, 892
AgsI	TTSAA	7 cut(s)	191, 563, 625, 737, 830, 877, 956
AjnI	CCWGG	1 cut(s)	631
AjuI	GAANNNNNNNTTGG	2 cut(s)	138, 170
AluBI	AGCT	6 cut(s)	488, 497, 692, 802, 873, 983
AluI	AGCT	6 cut(s)	488, 497, 692, 802, 873, 983
Alw26I	GTCTC	3 cut(s)	460, 569, 797
AlwI	GGATC	1 cut(s)	461
AoxI	GGCC	2 cut(s)	8, 1083
ApeKI	GCWGC	2 cut(s)	485, 689
ApoI	RAATTY	4 cut(s)	54, 319, 877, 1001
Asp700I	GAANNNNTTC	1 cut(s)	1201
AspS9I	GGNCC	5 cut(s)	34, 79, 350, 883, 986
AsuHPI	GGTGA	7 cut(s)	416, 595, 809, 1073, 1136, 1189, 1246
AvaII	GGWCC	5 cut(s)	34, 79, 350, 883, 986
BalI	TGGCCA	1 cut(s)	10
BbvI	GCAGC	2 cut(s)	497, 701
BccI	CCATC	2 cut(s)	304, 916
BceAI	ACGGC	3 cut(s)	199, 743, 877
BciT130I	CCWGG	1 cut(s)	633
BciVI	GTATCC	1 cut(s)	1272
BclI	TGATCA	1 cut(s)	1191
BcoDI	GTCTC	3 cut(s)	460, 569, 797
BfaI	CTAG	2 cut(s)	491, 1206
BfuAI	ACCTGC	1 cut(s)	571
BfuI	GTATCC	1 cut(s)	1272
BisI	GCNGC	6 cut(s)	266, 384, 426, 439, 486, 690
BlpI	GCTNAGC	1 cut(s)	865
BlsI	GCNGC	6 cut(s)	267, 385, 427, 440, 487, 691
Bme1390I	CCNGG	1 cut(s)	633
Bme18I	GGWCC	5 cut(s)	34, 79, 350, 883, 986
BmgT120I	GGNCC	5 cut(s)	34, 79, 350, 883, 986
BmrFI	CCNGG	1 cut(s)	633
BmsI	GCATC	3 cut(s)	688, 1036, 1083
BoxI	GACNNNNGTC	2 cut(s)	32, 67
BpmI	CTGGAG	1 cut(s)	330
Bpu1102I	GCTNAGC	1 cut(s)	865
BpuEI	CTTGAG	1 cut(s)	147
BsaJI	CCNNGG	3 cut(s)	11, 632, 1100
BsaWI	WCCGGW	1 cut(s)	1121
Bsc4I	CCNNNNNNNGG	2 cut(s)	359, 892
Bse118I	RCCGGY	1 cut(s)	352
Bse1I	ACTGG	2 cut(s)	599, 886
BseBI	CCWGG	1 cut(s)	633
BseDI	CCNNGG	3 cut(s)	11, 632, 1100
BseGI	GGATG	2 cut(s)	436, 1243
BseLI	CCNNNNNNNGG	2 cut(s)	359, 892
BseMII	CTCAG	4 cut(s)	387, 879, 1041, 1295
BseNI	ACTGG	2 cut(s)	599, 886
BseRI	GAGGAG	2 cut(s)	1057, 1089
BseXI	GCAGC	2 cut(s)	497, 701
Bsh1236I	CGCG	5 cut(s)	268, 341, 383, 425, 479
Bsh1285I	CGRYCG	1 cut(s)	226
BshFI	GGCC	2 cut(s)	10, 1085
BsiEI	CGRYCG	1 cut(s)	226
BsiSI	CCGG	2 cut(s)	353, 1122
BslFI	GGGAC	1 cut(s)	778
BslI	CCNNNNNNNGG	2 cut(s)	359, 892
BsmAI	GTCTC	3 cut(s)	460, 569, 797
BsmBI	CGTCTC	3 cut(s)	460, 569, 797
BsmFI	GGGAC	1 cut(s)	778
BsnI	GGCC	2 cut(s)	10, 1085
Bsp143I	GATC	3 cut(s)	223, 466, 1191
Bsp1720I	GCTNAGC	1 cut(s)	865
Bsp19I	CCATGG	1 cut(s)	11
Bsp68I	TCGCGA	1 cut(s)	341
BspACI	CCGC	8 cut(s)	266, 356, 383, 386, 425, 428, 438, 477
BspANI	GGCC	2 cut(s)	10, 1085
BspCNI	CTCAG	4 cut(s)	388, 878, 1042, 1294
BspFNI	CGCG	5 cut(s)	268, 341, 383, 425, 479
BspMI	ACCTGC	1 cut(s)	571
BspPI	GGATC	1 cut(s)	461
BsrFI	RCCGGY	1 cut(s)	352
BsrI	ACTGG	2 cut(s)	599, 886
BssAI	RCCGGY	1 cut(s)	352
BssECI	CCNNGG	3 cut(s)	11, 632, 1100
BssMI	GATC	3 cut(s)	223, 466, 1191
BssT1I	CCWWGG	1 cut(s)	11
Bst2UI	CCWGG	1 cut(s)	633
Bst4CI	ACNGT	4 cut(s)	240, 664, 895, 1274
BstAPI	GCANNNNNTGC	1 cut(s)	1136
BstC8I	GCNNGC	3 cut(s)	8, 687, 871
BstDEI	CTNAG	4 cut(s)	396, 865, 1050, 1281
BstDSI	CCRYGG	1 cut(s)	11
BstF5I	GGATG	2 cut(s)	436, 1243
BstFNI	CGCG	5 cut(s)	268, 341, 383, 425, 479
BstKTI	GATC	3 cut(s)	226, 469, 1194
BstMAI	GTCTC	3 cut(s)	460, 569, 797
BstMBI	GATC	3 cut(s)	223, 466, 1191
BstMCI	CGRYCG	1 cut(s)	226
BstMWI	GCNNNNNNNGC	9 cut(s)	292, 383, 392, 485, 494, 698, 870, 969, 1136
BstNI	CCWGG	1 cut(s)	633
BstPAI	GACNNNNGTC	2 cut(s)	32, 67
BstSCI	CCNGG	1 cut(s)	631
BstUI	CGCG	5 cut(s)	268, 341, 383, 425, 479
BstV1I	GCAGC	2 cut(s)	497, 701
BsuI	GTATCC	1 cut(s)	1272
BsuRI	GGCC	2 cut(s)	10, 1085
BtgI	CCRYGG	1 cut(s)	11
BtgZI	GCGATG	1 cut(s)	276
BtsCI	GGATG	2 cut(s)	436, 1243
BtsIMutI	CAGTG	2 cut(s)	606, 660
BtuMI	TCGCGA	1 cut(s)	341
BveI	ACCTGC	1 cut(s)	571
Cac8I	GCNNGC	3 cut(s)	8, 687, 871
Cfr10I	RCCGGY	1 cut(s)	352
Cfr13I	GGNCC	5 cut(s)	34, 79, 350, 883, 986
CseI	GACGC	3 cut(s)	292, 586, 779
Csp6I	GTAC	1 cut(s)	904
CviAII	CATG	5 cut(s)	12, 97, 121, 513, 1026
CviQI	GTAC	1 cut(s)	904
DdeI	CTNAG	4 cut(s)	396, 865, 1050, 1281
DpnI	GATC	3 cut(s)	225, 468, 1193
DpnII	GATC	3 cut(s)	223, 466, 1191
EaeI	YGGCCR	1 cut(s)	8
EciI	GGCGGA	1 cut(s)	443
Eco130I	CCWWGG	1 cut(s)	11
Eco147I	AGGCCT	1 cut(s)	1085
Eco47I	GGWCC	5 cut(s)	34, 79, 350, 883, 986
EcoRI	GAATTC	1 cut(s)	1001
EcoRII	CCWGG	1 cut(s)	631
EcoT14I	CCWWGG	1 cut(s)	11
ErhI	CCWWGG	1 cut(s)	11
Esp3I	CGTCTC	3 cut(s)	460, 569, 797
FaeI	CATG	5 cut(s)	15, 100, 124, 516, 1029
FalI	AAGNNNNNCTT	2 cut(s)	1201, 1233
FaqI	GGGAC	1 cut(s)	778
FatI	CATG	5 cut(s)	11, 96, 120, 512, 1025
FbaI	TGATCA	1 cut(s)	1191
FblI	GTMKAC	2 cut(s)	420, 508
Fnu4HI	GCNGC	6 cut(s)	266, 384, 426, 439, 486, 690
FokI	GGATG	2 cut(s)	443, 1230
Fsp4HI	GCNGC	6 cut(s)	266, 384, 426, 439, 486, 690
FspBI	CTAG	2 cut(s)	491, 1206
GluI	GCNGC	6 cut(s)	266, 384, 426, 439, 486, 690
GsuI	CTGGAG	1 cut(s)	330
HaeIII	GGCC	2 cut(s)	10, 1085
HapII	CCGG	2 cut(s)	353, 1122
HgaI	GACGC	3 cut(s)	292, 586, 779
Hin1II	CATG	5 cut(s)	15, 100, 124, 516, 1029
HincII	GTYRAC	2 cut(s)	509, 891
HindII	GTYRAC	2 cut(s)	509, 891
HindIII	AAGCTT	2 cut(s)	495, 871
HinfI	GANTC	7 cut(s)	270, 417, 614, 834, 1064, 1144, 1277
HpaI	GTTAAC	1 cut(s)	891
HpaII	CCGG	2 cut(s)	353, 1122
HphI	GGTGA	7 cut(s)	416, 595, 809, 1073, 1136, 1189, 1246
Hpy166II	GTNNAC	7 cut(s)	118, 169, 350, 412, 421, 509, 891
Hpy188I	TCNGA	8 cut(s)	62, 228, 252, 282, 574, 619, 1007, 1196
Hpy188III	TCNNGA	6 cut(s)	309, 340, 491, 518, 847, 1206
Hpy8I	GTNNAC	7 cut(s)	118, 169, 350, 412, 421, 509, 891
Hpy99I	CGWCG	3 cut(s)	286, 341, 811
HpyAV	CCTTC	5 cut(s)	481, 579, 1174, 1203, 1225
HpyCH4III	ACNGT	4 cut(s)	240, 664, 895, 1274
HpyCH4IV	ACGT	3 cut(s)	171, 336, 532
HpyCH4V	TGCA	5 cut(s)	541, 689, 963, 1074, 1251
HpyF10VI	GCNNNNNNNGC	9 cut(s)	292, 383, 392, 485, 494, 698, 870, 969, 1136
HpyF3I	CTNAG	4 cut(s)	396, 865, 1050, 1281
HpySE526I	ACGT	3 cut(s)	171, 336, 532
Hsp92II	CATG	5 cut(s)	15, 100, 124, 516, 1029
Ksp22I	TGATCA	1 cut(s)	1191
KspAI	GTTAAC	1 cut(s)	891
Kzo9I	GATC	3 cut(s)	223, 466, 1191
Lsp1109I	GCAGC	2 cut(s)	497, 701
LweI	GCATC	3 cut(s)	688, 1036, 1083
MaeI	CTAG	2 cut(s)	491, 1206
MaeII	ACGT	3 cut(s)	171, 336, 532
MaeIII	GTNAC	6 cut(s)	234, 645, 658, 758, 1061, 1274
MalI	GATC	3 cut(s)	225, 468, 1193
MboI	GATC	3 cut(s)	223, 466, 1191
MboII	GAAGA	8 cut(s)	215, 291, 551, 683, 968, 1020, 1085, 1209
MfeI	CAATTG	2 cut(s)	146, 680
MlsI	TGGCCA	1 cut(s)	10
MluCI	AATT	8 cut(s)	54, 146, 319, 343, 563, 680, 877, 1001
MluNI	TGGCCA	1 cut(s)	10
MlyI	GAGTC	3 cut(s)	426, 1058, 1271
MmeI	TCCRAC	2 cut(s)	305, 340
MnlI	CCTC	6 cut(s)	220, 939, 1045, 1078, 1107, 1110
Mox20I	TGGCCA	1 cut(s)	10
MroXI	GAANNNNTTC	1 cut(s)	1201
MscI	TGGCCA	1 cut(s)	10
MseI	TTAA	4 cut(s)	39, 75, 525, 890
Msp20I	TGGCCA	1 cut(s)	10
MspA1I	CMGCKG	1 cut(s)	692
MspI	CCGG	2 cut(s)	353, 1122
MspR9I	CCNGG	1 cut(s)	633
MunI	CAATTG	2 cut(s)	146, 680
MvaI	CCWGG	1 cut(s)	633
MvnI	CGCG	5 cut(s)	268, 341, 383, 425, 479
MwoI	GCNNNNNNNGC	9 cut(s)	292, 383, 392, 485, 494, 698, 870, 969, 1136
NcoI	CCATGG	1 cut(s)	11
NdeII	GATC	3 cut(s)	223, 466, 1191
NlaIII	CATG	5 cut(s)	15, 100, 124, 516, 1029
NmuCI	GTSAC	3 cut(s)	658, 1061, 1274
NruI	TCGCGA	1 cut(s)	341
PaqCI	CACCTGC	1 cut(s)	571
PceI	AGGCCT	1 cut(s)	1085
PdmI	GAANNNNTTC	1 cut(s)	1201
PfeI	GAWTC	4 cut(s)	270, 614, 834, 1144
PflFI	GACNNNGTC	1 cut(s)	513
PkrI	GCNGC	6 cut(s)	267, 385, 427, 440, 487, 691
Ple19I	CGATCG	1 cut(s)	226
PleI	GAGTC	3 cut(s)	425, 1058, 1271
PpsI	GAGTC	3 cut(s)	425, 1058, 1271
PshAI	GACNNNNGTC	2 cut(s)	32, 67
Psp6I	CCWGG	1 cut(s)	631
PspGI	CCWGG	1 cut(s)	631
PspPI	GGNCC	5 cut(s)	34, 79, 350, 883, 986
PsyI	GACNNNGTC	1 cut(s)	513
PvuI	CGATCG	1 cut(s)	226
PvuII	CAGCTG	1 cut(s)	692
RruI	TCGCGA	1 cut(s)	341
RsaI	GTAC	1 cut(s)	905
RsaNI	GTAC	1 cut(s)	904
SalI	GTCGAC	1 cut(s)	507
SaqAI	TTAA	4 cut(s)	39, 75, 525, 890
SatI	GCNGC	6 cut(s)	266, 384, 426, 439, 486, 690
Sau3AI	GATC	3 cut(s)	223, 466, 1191
Sau96I	GGNCC	5 cut(s)	34, 79, 350, 883, 986
SchI	GAGTC	3 cut(s)	426, 1058, 1271
ScrFI	CCNGG	1 cut(s)	633
SfaNI	GCATC	3 cut(s)	688, 1036, 1083
SinI	GGWCC	5 cut(s)	34, 79, 350, 883, 986
SmlI	CTYRAG	1 cut(s)	162
SmoI	CTYRAG	1 cut(s)	162
Sse9I	AATT	8 cut(s)	54, 146, 319, 343, 563, 680, 877, 1001
SseBI	AGGCCT	1 cut(s)	1085
SsiI	CCGC	8 cut(s)	266, 356, 383, 386, 425, 428, 438, 477
SspI	AATATT	1 cut(s)	628
SspMI	CTAG	2 cut(s)	491, 1206
StuI	AGGCCT	1 cut(s)	1085
StyD4I	CCNGG	1 cut(s)	631
StyI	CCWWGG	1 cut(s)	11
TaaI	ACNGT	4 cut(s)	240, 664, 895, 1274
TaiI	ACGT	3 cut(s)	174, 339, 535
TaqI	TCGA	3 cut(s)	508, 547, 703
TaqII	GACCGA	1 cut(s)	1092
TasI	AATT	8 cut(s)	54, 146, 319, 343, 563, 680, 877, 1001
TauI	GCSGC	4 cut(s)	268, 386, 428, 441
TfiI	GAWTC	4 cut(s)	270, 614, 834, 1144
Tru1I	TTAA	4 cut(s)	39, 75, 525, 890
Tru9I	TTAA	4 cut(s)	39, 75, 525, 890
TscAI	CASTG	2 cut(s)	606, 667
TseFI	GTSAC	3 cut(s)	658, 1061, 1274
TseI	GCWGC	2 cut(s)	485, 689
Tsp45I	GTSAC	3 cut(s)	658, 1061, 1274
TspDTI	ATGAA	3 cut(s)	113, 175, 312
TspGWI	ACGGA	4 cut(s)	266, 429, 795, 1243
TspRI	CASTG	2 cut(s)	606, 667
Tth111I	GACNNNGTC	1 cut(s)	513
VpaK11BI	GGWCC	5 cut(s)	34, 79, 350, 883, 986
XapI	RAATTY	4 cut(s)	54, 319, 877, 1001
XbaI	TCTAGA	2 cut(s)	490, 1205
XmiI	GTMKAC	2 cut(s)	420, 508
XmnI	GAANNNNTTC	1 cut(s)	1201
XspI	CTAG	2 cut(s)	491, 1206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.