Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0011370

Physical Location & Seq

Genomic Coordinates Reverse (-)

38264281 .. 38269802

Gene Structure 5522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002696

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGGTTTGGCGAGATTTGGGCGTCCGAAGGGAGCACCAGAAGGGCAGTTGAGCCCCAACCTGTTCGTCGCCAACTGTGGGCCCGCCGTGGGACTCTCCCACGACGCCATTGCTTCGGCGTTTGGGGCCTTCGGTCAAGTCAAAGGCGTCTACGCCGCCGACGACACGGGTGCTCGTGTCGTTGTCTCCTTTGCTGAAGAGGCCTCTGCTCAGAACGCCTTGAATGCGTTGCATGGCCGCCCTTGTGCTCACCTCGGGGGTCGTACCTTGCACATTCGCTATTCTGTTCTTCAACCCACTTCACTGGGTCGAGTCAATGACTCTGTGGAAGTATCTTTACTAGATTCCGAGTTGAATATTCCTGGCCTTTACTTATTCCACGATTTTGTCACGGCTGAAGAAGAGGAGGAGCTCCTTGCAGCAGTTGATGAAAGGCCTTGGAAAAATCTTGCAAAAAGAAGGGTTCAGCATTATGGCTATGAATTTTGTTATGAGACAAGGAATGTTGATTCTAAGAAGAATTTAGGTGAATTTCCAGCATTTGTTCCCCCTATGCTTGAAAGAATATCTATGTTTCCGAAGCGCGAGGATGTTGAAACTATAGCTTTGGACCAATTAACGGTTAATGAGTATCCACCTGGGGTGGGCTTGTCCCCACATATTGATACCCATTCTGCTTTTGAGGGATTAATTTTCAGCCTTTCGTTAGCAGGGCCTTGCATCATGGAGTTCAGAAGATACTTTGAACGTGACCGGCCACCTAGAACTTCCTCAGGTATTGATATCGAAACGGAAAATTCTGAAAACAATTCAAATTTCTTAAGGAGGGCTATATATCTTCCCCCTCGGTCTTTGTTACTATTATCTGGAGAGGCACGCTATGCTTGGCATCACTACATTCCACATCATAAGATTGACCAGGTAAAAGACAGTGTGATCAGAAGAGGCTCAAGGAGGGTGTCTTTCACATTTCGTAAGGTCAGAACAACTCCTTGCCAATGTGAATTTCCACAATACTGTGATTCTCAGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0001510 GO:0002097 GO:0002098 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0008198 GO:0008270 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016300 GO:0016491 GO:0016705 GO:0016706 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0051213 GO:0055114 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy_2

Protein Analysis

345

Amino Acids

38.58

Weight (kDa)

6.47

Isoelectric Point (pI)

48.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy_2	PF13532	122 - 325	9.4e-18	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31600 AT1G31600 AT1G31600 AT1G31600
fragaria_vesca	FvH4_5g24670 FvH4_5g24670 FvH4_5g24670
malus_domestica	MD06G1012100.v1.1
prunus_persica	Prupe.5G014800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0215051
rosa_laevigata	RLG00000002696
rosa_multiflora	Rmu_sc0016046.1_g000004
rosa_roxburghii	Rroxscaffold_3G00244630
rosa_rugosa	Rorug07G0149700 Rorug07G0149800
rosa_samantha	Rh7AG286800 Rh7BG278300 Rh7CG306200 Rh7DG290300
rosa_wichuraiana	Rw7G024460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	150
AccII	CGCG	1 cut(s)	585
AciI	CCGC	3 cut(s)	84, 156, 238
AcoI	YGGCCR	2 cut(s)	235, 755
AcsI	RAATTY	6 cut(s)	482, 520, 530, 796, 814, 1004
AcuI	CTGAAG	2 cut(s)	216, 417
AcyI	GRCGYC	3 cut(s)	22, 105, 147
AfaI	GTAC	1 cut(s)	265
AfiI	CCNNNNNNNGG	4 cut(s)	78, 89, 619, 644
AflII	CTTAAG	1 cut(s)	820
AgsI	TTSAA	7 cut(s)	223, 293, 355, 560, 596, 746, 813
AjnI	CCWGG	3 cut(s)	361, 637, 918
AjuI	GAANNNNNNNTTGG	2 cut(s)	990, 1022
AluBI	AGCT	2 cut(s)	412, 605
AluI	AGCT	2 cut(s)	412, 605
Alw21I	GWGCWC	4 cut(s)	37, 175, 250, 414
Alw26I	GTCTC	2 cut(s)	190, 488
Ama87I	CYCGRG	1 cut(s)	254
AoxI	GGCC	8 cut(s)	80, 126, 201, 235, 364, 434, 713, 755
ApaI	GGGCCC	1 cut(s)	84
ApeKI	GCWGC	1 cut(s)	419
ApoI	RAATTY	6 cut(s)	482, 520, 530, 796, 814, 1004
AseI	ATTAAT	1 cut(s)	689
AspLEI	GCGC	1 cut(s)	585
AspS9I	GGNCC	5 cut(s)	80, 81, 126, 610, 713
AsuHPI	GGTGA	2 cut(s)	242, 539
AvaI	CYCGRG	1 cut(s)	254
AvaII	GGWCC	1 cut(s)	610
AxyI	CCTNAGG	1 cut(s)	772
BaeGI	GKGCMC	1 cut(s)	84
BanII	GRGCYC	3 cut(s)	56, 84, 414
BarI	GAAGNNNNNNTAC	2 cut(s)	321, 353
BauI	CACGAG	1 cut(s)	174
Bbv12I	GWGCWC	4 cut(s)	37, 175, 250, 414
BbvI	GCAGC	1 cut(s)	431
BceAI	ACGGC	2 cut(s)	71, 408
BcgI	CGANNNNNNTGC	4 cut(s)	92, 126, 152, 186
BciT130I	CCWGG	3 cut(s)	363, 639, 920
BciVI	GTATCC	1 cut(s)	642
BclI	TGATCA	1 cut(s)	936
BcoDI	GTCTC	2 cut(s)	190, 488
BfaI	CTAG	2 cut(s)	341, 762
BfmI	CTRYAG	1 cut(s)	600
BfrI	CTTAAG	1 cut(s)	820
BfuI	GTATCC	1 cut(s)	642
BisI	GCNGC	3 cut(s)	156, 238, 420
BlsI	GCNGC	3 cut(s)	157, 239, 421
Bme1390I	CCNGG	3 cut(s)	363, 639, 920
Bme18I	GGWCC	1 cut(s)	610
BmeT110I	CYCGRG	1 cut(s)	254
BmgT120I	GGNCC	5 cut(s)	80, 81, 126, 610, 713
BmiI	GGNNCC	2 cut(s)	82, 127
BmrFI	CCNGG	3 cut(s)	363, 639, 920
BmrI	ACTGGG	1 cut(s)	314
BmsI	GCATC	2 cut(s)	729, 898
BmuI	ACTGGG	1 cut(s)	314
BpmI	CTGGAG	1 cut(s)	888
BpuEI	CTTGAG	1 cut(s)	934
BsaHI	GRCGYC	3 cut(s)	22, 105, 147
BsaJI	CCNNGG	5 cut(s)	87, 253, 437, 638, 845
Bsc4I	CCNNNNNNNGG	4 cut(s)	78, 89, 619, 644
Bse118I	RCCGGY	1 cut(s)	753
Bse1I	ACTGG	1 cut(s)	309
Bse21I	CCTNAGG	1 cut(s)	772
Bse3DI	GCAATG	1 cut(s)	108
BseBI	CCWGG	3 cut(s)	363, 639, 920
BseDI	CCNNGG	5 cut(s)	87, 253, 437, 638, 845
BseGI	GGATG	1 cut(s)	595
BseLI	CCNNNNNNNGG	4 cut(s)	78, 89, 619, 644
BseMI	GCAATG	1 cut(s)	108
BseMII	CTCAG	2 cut(s)	224, 786
BseNI	ACTGG	1 cut(s)	309
BseRI	GAGGAG	2 cut(s)	419, 422
BseSI	GKGCMC	1 cut(s)	84
BseXI	GCAGC	1 cut(s)	431
Bsh1236I	CGCG	1 cut(s)	585
BshFI	GGCC	8 cut(s)	82, 128, 203, 237, 366, 436, 715, 757
BsiHKAI	GWGCWC	4 cut(s)	37, 175, 250, 414
BsiHKCI	CYCGRG	1 cut(s)	254
BsiSI	CCGG	1 cut(s)	754
BslFI	GGGAC	2 cut(s)	105, 637
BslI	CCNNNNNNNGG	4 cut(s)	78, 89, 619, 644
BsmAI	GTCTC	2 cut(s)	190, 488
BsmFI	GGGAC	2 cut(s)	105, 637
BsmI	GAATGC	1 cut(s)	229
BsnI	GGCC	8 cut(s)	82, 128, 203, 237, 366, 436, 715, 757
BsoBI	CYCGRG	1 cut(s)	254
Bsp120I	GGGCCC	1 cut(s)	80
Bsp1286I	GDGCHC	6 cut(s)	37, 56, 84, 175, 250, 414
Bsp143I	GATC	1 cut(s)	936
BspACI	CCGC	3 cut(s)	84, 156, 238
BspANI	GGCC	8 cut(s)	82, 128, 203, 237, 366, 436, 715, 757
BspCNI	CTCAG	2 cut(s)	223, 785
BspFNI	CGCG	1 cut(s)	585
BspLI	GGNNCC	2 cut(s)	82, 127
BspTI	CTTAAG	1 cut(s)	820
BsrDI	GCAATG	1 cut(s)	108
BsrFI	RCCGGY	1 cut(s)	753
BsrI	ACTGG	1 cut(s)	309
BssAI	RCCGGY	1 cut(s)	753
BssECI	CCNNGG	5 cut(s)	87, 253, 437, 638, 845
BssMI	GATC	1 cut(s)	936
BssNI	GRCGYC	3 cut(s)	22, 105, 147
BssSI	CACGAG	1 cut(s)	174
BssT1I	CCWWGG	1 cut(s)	437
Bst2BI	CACGAG	1 cut(s)	174
Bst2UI	CCWGG	3 cut(s)	363, 639, 920
Bst4CI	ACNGT	4 cut(s)	77, 622, 932, 1019
Bst6I	CTCTTC	3 cut(s)	192, 396, 937
BstACI	GRCGYC	3 cut(s)	22, 105, 147
BstAFI	CTTAAG	1 cut(s)	820
BstAPI	GCANNNNNTGC	1 cut(s)	881
BstC8I	GCNNGC	2 cut(s)	84, 877
BstDEI	CTNAG	4 cut(s)	210, 513, 772, 1026
BstDSI	CCRYGG	1 cut(s)	87
BstF5I	GGATG	1 cut(s)	595
BstFNI	CGCG	1 cut(s)	585
BstHHI	GCGC	1 cut(s)	585
BstKTI	GATC	1 cut(s)	939
BstMAI	GTCTC	2 cut(s)	190, 488
BstMBI	GATC	1 cut(s)	936
BstMWI	GCNNNNNNNGC	5 cut(s)	125, 200, 215, 224, 881
BstNI	CCWGG	3 cut(s)	363, 639, 920
BstSCI	CCNGG	3 cut(s)	361, 637, 918
BstSFI	CTRYAG	1 cut(s)	600
BstSLI	GKGCMC	1 cut(s)	84
BstUI	CGCG	1 cut(s)	585
BstV1I	GCAGC	1 cut(s)	431
BstXI	CCANNNNNNTGG	1 cut(s)	304
Bsu36I	CCTNAGG	1 cut(s)	772
BsuI	GTATCC	1 cut(s)	642
BsuRI	GGCC	8 cut(s)	82, 128, 203, 237, 366, 436, 715, 757
BtgI	CCRYGG	1 cut(s)	87
BtsCI	GGATG	1 cut(s)	595
BtsIMutI	CAGTG	2 cut(s)	302, 937
Cac8I	GCNNGC	2 cut(s)	84, 877
CfoI	GCGC	1 cut(s)	585
Cfr10I	RCCGGY	1 cut(s)	753
Cfr13I	GGNCC	5 cut(s)	80, 81, 126, 610, 713
CseI	GACGC	3 cut(s)	11, 113, 136
CsiI	ACCWGGT	1 cut(s)	918
Csp6I	GTAC	1 cut(s)	264
CviAII	CATG	2 cut(s)	233, 724
CviQI	GTAC	1 cut(s)	264
DdeI	CTNAG	4 cut(s)	210, 513, 772, 1026
DpnI	GATC	1 cut(s)	938
DpnII	GATC	1 cut(s)	936
EaeI	YGGCCR	2 cut(s)	235, 755
Eam1104I	CTCTTC	3 cut(s)	192, 396, 937
EarI	CTCTTC	3 cut(s)	192, 396, 937
Ecl136II	GAGCTC	1 cut(s)	412
Eco130I	CCWWGG	1 cut(s)	437
Eco147I	AGGCCT	2 cut(s)	203, 436
Eco24I	GRGCYC	3 cut(s)	56, 84, 414
Eco32I	GATATC	1 cut(s)	784
Eco47I	GGWCC	1 cut(s)	610
Eco53kI	GAGCTC	1 cut(s)	412
Eco57I	CTGAAG	2 cut(s)	216, 417
Eco81I	CCTNAGG	1 cut(s)	772
Eco88I	CYCGRG	1 cut(s)	254
EcoICRI	GAGCTC	1 cut(s)	412
EcoO109I	RGGNCCY	2 cut(s)	126, 713
EcoRII	CCWGG	3 cut(s)	361, 637, 918
EcoRV	GATATC	1 cut(s)	784
EcoT14I	CCWWGG	1 cut(s)	437
EcoT38I	GRGCYC	3 cut(s)	56, 84, 414
ErhI	CCWWGG	1 cut(s)	437
FaeI	CATG	2 cut(s)	236, 727
FaqI	GGGAC	2 cut(s)	105, 637
FatI	CATG	2 cut(s)	232, 723
FauI	CCCGC	1 cut(s)	91
FbaI	TGATCA	1 cut(s)	936
FblI	GTMKAC	1 cut(s)	150
Fnu4HI	GCNGC	3 cut(s)	156, 238, 420
FokI	GGATG	1 cut(s)	602
FriOI	GRGCYC	3 cut(s)	56, 84, 414
Fsp4HI	GCNGC	3 cut(s)	156, 238, 420
FspBI	CTAG	2 cut(s)	341, 762
GlaI	GCGC	1 cut(s)	584
GluI	GCNGC	3 cut(s)	156, 238, 420
GsuI	CTGGAG	1 cut(s)	888
HaeIII	GGCC	8 cut(s)	82, 128, 203, 237, 366, 436, 715, 757
HapII	CCGG	1 cut(s)	754
HgaI	GACGC	3 cut(s)	11, 113, 136
HhaI	GCGC	1 cut(s)	585
Hin1I	GRCGYC	3 cut(s)	22, 105, 147
Hin1II	CATG	2 cut(s)	236, 727
Hin6I	GCGC	1 cut(s)	583
HinP1I	GCGC	1 cut(s)	583
HinfI	GANTC	6 cut(s)	93, 312, 320, 344, 509, 1022
HpaII	CCGG	1 cut(s)	754
HphI	GGTGA	2 cut(s)	242, 539
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	9 cut(s)	27, 213, 349, 579, 734, 802, 941, 983, 1029
Hpy188III	TCNNGA	1 cut(s)	867
Hpy8I	GTNNAC	1 cut(s)	151
Hpy99I	CGWCG	3 cut(s)	71, 107, 164
HpyAV	CCTTC	4 cut(s)	22, 35, 139, 453
HpyCH4III	ACNGT	4 cut(s)	77, 622, 932, 1019
HpyCH4IV	ACGT	1 cut(s)	748
HpyCH4V	TGCA	5 cut(s)	232, 271, 419, 452, 720
HpyF10VI	GCNNNNNNNGC	5 cut(s)	125, 200, 215, 224, 881
HpyF3I	CTNAG	4 cut(s)	210, 513, 772, 1026
HpySE526I	ACGT	1 cut(s)	748
Hsp92I	GRCGYC	3 cut(s)	22, 105, 147
Hsp92II	CATG	2 cut(s)	236, 727
HspAI	GCGC	1 cut(s)	583
Ksp22I	TGATCA	1 cut(s)	936
Kzo9I	GATC	1 cut(s)	936
LmnI	GCTCC	3 cut(s)	32, 409, 417
Lsp1109I	GCAGC	1 cut(s)	431
LweI	GCATC	2 cut(s)	729, 898
MabI	ACCWGGT	1 cut(s)	918
MaeI	CTAG	2 cut(s)	341, 762
MaeII	ACGT	1 cut(s)	748
MaeIII	GTNAC	3 cut(s)	388, 749, 855
MalI	GATC	1 cut(s)	938
MboI	GATC	1 cut(s)	936
MboII	GAAGA	8 cut(s)	209, 281, 410, 413, 529, 747, 830, 954
MhlI	GDGCHC	6 cut(s)	37, 56, 84, 175, 250, 414
MluCI	AATT	9 cut(s)	482, 520, 530, 614, 690, 796, 808, 814, 1004
MlyI	GAGTC	3 cut(s)	87, 314, 321
MseI	TTAA	4 cut(s)	617, 624, 689, 821
MspCI	CTTAAG	1 cut(s)	820
MspI	CCGG	1 cut(s)	754
MspR9I	CCNGG	3 cut(s)	363, 639, 920
Mva1269I	GAATGC	1 cut(s)	229
MvaI	CCWGG	3 cut(s)	363, 639, 920
MvnI	CGCG	1 cut(s)	585
MwoI	GCNNNNNNNGC	5 cut(s)	125, 200, 215, 224, 881
NdeII	GATC	1 cut(s)	936
NlaIII	CATG	2 cut(s)	236, 727
NlaIV	GGNNCC	2 cut(s)	82, 127
NmuCI	GTSAC	2 cut(s)	388, 749
PceI	AGGCCT	2 cut(s)	203, 436
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PctI	GAATGC	1 cut(s)	229
PfeI	GAWTC	3 cut(s)	344, 509, 1022
PkrI	GCNGC	3 cut(s)	157, 239, 421
PleI	GAGTC	3 cut(s)	87, 314, 320
PpsI	GAGTC	3 cut(s)	87, 314, 320
PshBI	ATTAAT	1 cut(s)	689
Psp124BI	GAGCTC	1 cut(s)	414
Psp6I	CCWGG	3 cut(s)	361, 637, 918
PspGI	CCWGG	3 cut(s)	361, 637, 918
PspN4I	GGNNCC	2 cut(s)	82, 127
PspOMI	GGGCCC	1 cut(s)	80
PspPI	GGNCC	5 cut(s)	80, 81, 126, 610, 713
RsaI	GTAC	1 cut(s)	265
RsaNI	GTAC	1 cut(s)	264
SacI	GAGCTC	1 cut(s)	414
SaqAI	TTAA	4 cut(s)	617, 624, 689, 821
SatI	GCNGC	3 cut(s)	156, 238, 420
Sau3AI	GATC	1 cut(s)	936
Sau96I	GGNCC	5 cut(s)	80, 81, 126, 610, 713
SchI	GAGTC	3 cut(s)	87, 314, 321
ScrFI	CCNGG	3 cut(s)	363, 639, 920
SduI	GDGCHC	6 cut(s)	37, 56, 84, 175, 250, 414
SexAI	ACCWGGT	1 cut(s)	918
SfaNI	GCATC	2 cut(s)	729, 898
SfcI	CTRYAG	1 cut(s)	600
SinI	GGWCC	1 cut(s)	610
SmlI	CTYRAG	2 cut(s)	820, 949
SmoI	CTYRAG	2 cut(s)	820, 949
Sse9I	AATT	9 cut(s)	482, 520, 530, 614, 690, 796, 808, 814, 1004
SseBI	AGGCCT	2 cut(s)	203, 436
SsiI	CCGC	3 cut(s)	84, 156, 238
SspI	AATATT	1 cut(s)	358
SspMI	CTAG	2 cut(s)	341, 762
SstI	GAGCTC	1 cut(s)	414
StuI	AGGCCT	2 cut(s)	203, 436
StyD4I	CCNGG	3 cut(s)	361, 637, 918
StyI	CCWWGG	1 cut(s)	437
TaaI	ACNGT	4 cut(s)	77, 622, 932, 1019
TaiI	ACGT	1 cut(s)	751
TaqI	TCGA	2 cut(s)	310, 786
TaqII	GACCGA	2 cut(s)	122, 837
TasI	AATT	9 cut(s)	482, 520, 530, 614, 690, 796, 808, 814, 1004
TauI	GCSGC	2 cut(s)	158, 240
TfiI	GAWTC	3 cut(s)	344, 509, 1022
Tru1I	TTAA	4 cut(s)	617, 624, 689, 821
Tru9I	TTAA	4 cut(s)	617, 624, 689, 821
TscAI	CASTG	2 cut(s)	309, 937
TseFI	GTSAC	2 cut(s)	388, 749
TseI	GCWGC	1 cut(s)	419
Tsp45I	GTSAC	2 cut(s)	388, 749
TspDTI	ATGAA	2 cut(s)	444, 495
TspGWI	ACGGA	1 cut(s)	806
TspRI	CASTG	2 cut(s)	309, 937
Vha464I	CTTAAG	1 cut(s)	820
VpaK11BI	GGWCC	1 cut(s)	610
VspI	ATTAAT	1 cut(s)	689
XapI	RAATTY	6 cut(s)	482, 520, 530, 796, 814, 1004
XmiI	GTMKAC	1 cut(s)	150
XspI	CTAG	2 cut(s)	341, 762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.