Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0011370

Physical Location & Seq

Genomic Coordinates Reverse (-)

1506508 .. 1511063

Gene Structure 4556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1012100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGGTTTAACACGATTTGGGCGTCCGAAGGGAGGAAAAGGGCAGTCGAGCCCCAACCTATACGTGGCCAACTGTGGGCCAGCAGTGGGACTCTCCTACGACACCATAGCGGCGGTGTTTGCGGCCTTCGGTGAAATCAAAGGAGTGTACGCGGCTGACGAGAGCGGCGCTCGGGTTGTTGTGTCTTTTGCAGAAGAGGGTTGTGCCCAAAACGCCTTGAATGCATTGGGCGGTCGGCCTTGCCCTGAGCTTGGAGGGCGCTCCTTGCACATTCGGTACTCTGTGATTCAGCCCACTTCGCAGGGCCGAGCAAATGATTCAGTTCCCGTATCTTTGTTGGCTTCAGATTTAAACATTCCTGGCCTTTACTTGTTTCATGACTTTGTCACTGCCAAAGAAGAGGAGGAGTTACTTGCAGCAGTTGATGAAAGGCATTGGAATAATCTTTCGAAAAGAAGGGTTCAACATTATGGCTATGAATTTTGTTATGAAACAAGGAACGTTGATTCTAGAAAGAACTTAGGTGAACTTCCAAGATTTGTATCCCCTATACTTGAAAGGATATCTATGCTTCCAAACTGCAAGGATGATGAAGCTATTGTTTTGGACCAGTTAACGGTTAATGAGTACCCATCTGGGGTGGGTTTGTCCCCACATATAGACACCCATTCTGCTTTTGAGGGATTAATTTTCAGCCTTTCATTAGCAGGACCTTGCATTATGGAGTTTAGAAGATATCTGGAAGGCGGGTTGCCTCCTAGACCTTCCTCAAGTTCTGATTTTGAAGTGGAATGTTCTGAAAAGAATTCAAATTTTTTAAGGAGGGCAATCTATCTTCCTCCTCGGTCTATGCTACTGTTATCTGGGGAGGCGCGCTATGCGTGGAATCATTACATTCCACACCATAAGATTGACATGGTGAATGACAGTGTGATAAGGCGAGGCTCAAGGAGGGTGTCGTTCACACTTCGTAAGATTAGAACAAGTCCTTGCCAATGTGAATTTCCGGAATATTGCGACTCTCAGAGATTAAATGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0001510 GO:0002097 GO:0002098 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0008198 GO:0008270 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016300 GO:0016491 GO:0016705 GO:0016706 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0051213 GO:0055114 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy_2

Protein Analysis

347

Amino Acids

38.44

Weight (kDa)

6.52

Isoelectric Point (pI)

55.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy_2	PF13532	132 - 324	2.2e-14	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31600 AT1G31600 AT1G31600 AT1G31600
fragaria_vesca	FvH4_5g24670 FvH4_5g24670 FvH4_5g24670
malus_domestica	MD06G1012100.v1.1
prunus_persica	Prupe.5G014800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0215051
rosa_laevigata	RLG00000002696
rosa_multiflora	Rmu_sc0016046.1_g000004
rosa_roxburghii	Rroxscaffold_3G00244630
rosa_rugosa	Rorug07G0149700 Rorug07G0149800
rosa_samantha	Rh7AG286800 Rh7BG278300 Rh7CG306200 Rh7DG290300
rosa_wichuraiana	Rw7G024460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	165
AccII	CGCG	2 cut(s)	152, 874
AccIII	TCCGGA	1 cut(s)	1006
AciI	CCGC	7 cut(s)	110, 113, 122, 152, 165, 231, 747
AclI	AACGTT	1 cut(s)	501
AcoI	YGGCCR	1 cut(s)	66
AcsI	RAATTY	4 cut(s)	479, 805, 811, 1001
AcuI	CTGAAG	1 cut(s)	327
AcyI	GRCGYC	1 cut(s)	22
AfaI	GTAC	3 cut(s)	149, 278, 629
AfiI	CCNNNNNNNGG	7 cut(s)	32, 64, 75, 86, 251, 616, 637
AgsI	TTSAA	5 cut(s)	220, 464, 557, 785, 810
AjnI	CCWGG	1 cut(s)	358
AjuI	GAANNNNNNNTTGG	2 cut(s)	987, 1019
AluBI	AGCT	2 cut(s)	250, 596
AluI	AGCT	2 cut(s)	250, 596
Ama87I	CYCGRG	1 cut(s)	171
Aor13HI	TCCGGA	1 cut(s)	1006
AoxI	GGCC	6 cut(s)	66, 77, 123, 236, 304, 361
ApeKI	GCWGC	1 cut(s)	416
ApoI	RAATTY	4 cut(s)	479, 805, 811, 1001
AseI	ATTAAT	1 cut(s)	686
AspLEI	GCGC	4 cut(s)	170, 261, 874, 876
AspS9I	GGNCC	4 cut(s)	77, 304, 607, 710
AsuHPI	GGTGA	3 cut(s)	143, 536, 931
AsuII	TTCGAA	1 cut(s)	449
AvaI	CYCGRG	1 cut(s)	171
AvaII	GGWCC	2 cut(s)	607, 710
BaeGI	GKGCMC	1 cut(s)	208
BalI	TGGCCA	1 cut(s)	68
BanII	GRGCYC	1 cut(s)	53
BbvI	GCAGC	1 cut(s)	428
BccI	CCATC	1 cut(s)	640
BciT130I	CCWGG	1 cut(s)	360
BciVI	GTATCC	1 cut(s)	553
BfaI	CTAG	2 cut(s)	510, 759
BfoI	RGCGCY	2 cut(s)	171, 262
BfuI	GTATCC	1 cut(s)	553
BisI	GCNGC	5 cut(s)	111, 123, 153, 166, 417
BlsI	GCNGC	5 cut(s)	112, 124, 154, 167, 418
Bme1390I	CCNGG	1 cut(s)	360
Bme18I	GGWCC	2 cut(s)	607, 710
BmeT110I	CYCGRG	1 cut(s)	171
BmgT120I	GGNCC	4 cut(s)	77, 304, 607, 710
BmrFI	CCNGG	1 cut(s)	360
BplI	GAGNNNNNCTC	2 cut(s)	154, 186
Bpu10I	CCTNAGC	1 cut(s)	246
Bpu14I	TTCGAA	1 cut(s)	449
BpuEI	CTTGAG	2 cut(s)	754, 931
BsaAI	YACGTR	1 cut(s)	64
BsaBI	GATNNNNATC	1 cut(s)	541
BsaHI	GRCGYC	1 cut(s)	22
BsaJI	CCNNGG	1 cut(s)	842
BsaWI	WCCGGW	1 cut(s)	1006
Bsc4I	CCNNNNNNNGG	7 cut(s)	32, 64, 75, 86, 251, 616, 637
Bse1I	ACTGG	1 cut(s)	610
Bse8I	GATNNNNATC	1 cut(s)	541
BseAI	TCCGGA	1 cut(s)	1006
BseBI	CCWGG	1 cut(s)	360
BseDI	CCNNGG	1 cut(s)	842
BseGI	GGATG	1 cut(s)	592
BseJI	GATNNNNATC	1 cut(s)	541
BseLI	CCNNNNNNNGG	7 cut(s)	32, 64, 75, 86, 251, 616, 637
BseMII	CTCAG	2 cut(s)	237, 1037
BseNI	ACTGG	1 cut(s)	610
BsePI	GCGCGC	1 cut(s)	872
BseRI	GAGGAG	3 cut(s)	416, 419, 831
BseSI	GKGCMC	1 cut(s)	208
BseXI	GCAGC	1 cut(s)	428
Bsh1236I	CGCG	2 cut(s)	152, 874
Bsh1285I	CGRYCG	1 cut(s)	235
BshFI	GGCC	6 cut(s)	68, 79, 125, 238, 306, 363
BsiEI	CGRYCG	1 cut(s)	235
BsiHKCI	CYCGRG	1 cut(s)	171
BsiSI	CCGG	1 cut(s)	1007
BslFI	GGGAC	2 cut(s)	102, 634
BslI	CCNNNNNNNGG	7 cut(s)	32, 64, 75, 86, 251, 616, 637
BsmFI	GGGAC	2 cut(s)	102, 634
BsmI	GAATGC	1 cut(s)	226
BsnI	GGCC	6 cut(s)	68, 79, 125, 238, 306, 363
BsoBI	CYCGRG	1 cut(s)	171
Bsp119I	TTCGAA	1 cut(s)	449
Bsp1286I	GDGCHC	2 cut(s)	53, 208
Bsp13I	TCCGGA	1 cut(s)	1006
BspACI	CCGC	7 cut(s)	110, 113, 122, 152, 165, 231, 747
BspANI	GGCC	6 cut(s)	68, 79, 125, 238, 306, 363
BspCNI	CTCAG	2 cut(s)	238, 1036
BspEI	TCCGGA	1 cut(s)	1006
BspFNI	CGCG	2 cut(s)	152, 874
BspHI	TCATGA	1 cut(s)	376
BspT104I	TTCGAA	1 cut(s)	449
BsrBI	CCGCTC	1 cut(s)	165
BsrI	ACTGG	1 cut(s)	610
BssECI	CCNNGG	1 cut(s)	842
BssHII	GCGCGC	1 cut(s)	872
BssNI	GRCGYC	1 cut(s)	22
Bst2UI	CCWGG	1 cut(s)	360
Bst4CI	ACNGT	4 cut(s)	74, 619, 858, 929
Bst6I	CTCTTC	2 cut(s)	189, 393
BstACI	GRCGYC	1 cut(s)	22
BstBAI	YACGTR	1 cut(s)	64
BstBI	TTCGAA	1 cut(s)	449
BstC8I	GCNNGC	2 cut(s)	81, 874
BstDEI	CTNAG	3 cut(s)	246, 520, 1023
BstF5I	GGATG	1 cut(s)	592
BstFNI	CGCG	2 cut(s)	152, 874
BstH2I	RGCGCY	2 cut(s)	171, 262
BstHHI	GCGC	4 cut(s)	170, 261, 874, 876
BstMCI	CGRYCG	1 cut(s)	235
BstMWI	GCNNNNNNNGC	7 cut(s)	119, 212, 221, 256, 265, 298, 878
BstNI	CCWGG	1 cut(s)	360
BstSCI	CCNGG	1 cut(s)	358
BstSLI	GKGCMC	1 cut(s)	208
BstUI	CGCG	2 cut(s)	152, 874
BstV1I	GCAGC	1 cut(s)	428
BsuI	GTATCC	1 cut(s)	553
BsuRI	GGCC	6 cut(s)	68, 79, 125, 238, 306, 363
BtsCI	GGATG	1 cut(s)	592
BtsI	GCAGTG	2 cut(s)	90, 387
BtsIMutI	CAGTG	3 cut(s)	90, 387, 934
Cac8I	GCNNGC	2 cut(s)	81, 874
CciI	TCATGA	1 cut(s)	376
CfoI	GCGC	4 cut(s)	170, 261, 874, 876
Cfr13I	GGNCC	4 cut(s)	77, 304, 607, 710
CseI	GACGC	1 cut(s)	11
Csp6I	GTAC	3 cut(s)	148, 277, 628
CviAII	CATG	2 cut(s)	377, 916
CviQI	GTAC	3 cut(s)	148, 277, 628
DdeI	CTNAG	3 cut(s)	246, 520, 1023
DraI	TTTAAA	1 cut(s)	351
EaeI	YGGCCR	1 cut(s)	66
Eam1104I	CTCTTC	2 cut(s)	189, 393
EarI	CTCTTC	2 cut(s)	189, 393
Eco24I	GRGCYC	1 cut(s)	53
Eco32I	GATATC	2 cut(s)	564, 737
Eco47I	GGWCC	2 cut(s)	607, 710
Eco57I	CTGAAG	1 cut(s)	327
Eco88I	CYCGRG	1 cut(s)	171
EcoO109I	RGGNCCY	1 cut(s)	710
EcoRI	GAATTC	1 cut(s)	805
EcoRII	CCWGG	1 cut(s)	358
EcoRV	GATATC	2 cut(s)	564, 737
EcoT22I	ATGCAT	1 cut(s)	226
EcoT38I	GRGCYC	1 cut(s)	53
FaeI	CATG	2 cut(s)	380, 919
FaqI	GGGAC	2 cut(s)	102, 634
FatI	CATG	2 cut(s)	376, 915
FauI	CCCGC	1 cut(s)	740
Fnu4HI	GCNGC	5 cut(s)	111, 123, 153, 166, 417
FokI	GGATG	1 cut(s)	599
FriOI	GRGCYC	1 cut(s)	53
Fsp4HI	GCNGC	5 cut(s)	111, 123, 153, 166, 417
FspBI	CTAG	2 cut(s)	510, 759
GlaI	GCGC	4 cut(s)	169, 260, 873, 875
GluI	GCNGC	5 cut(s)	111, 123, 153, 166, 417
HaeII	RGCGCY	2 cut(s)	171, 262
HaeIII	GGCC	6 cut(s)	68, 79, 125, 238, 306, 363
HapII	CCGG	1 cut(s)	1007
HgaI	GACGC	1 cut(s)	11
HhaI	GCGC	4 cut(s)	170, 261, 874, 876
Hin1I	GRCGYC	1 cut(s)	22
Hin1II	CATG	2 cut(s)	380, 919
Hin6I	GCGC	4 cut(s)	168, 259, 872, 874
HinP1I	GCGC	4 cut(s)	168, 259, 872, 874
HincII	GTYRAC	1 cut(s)	615
HindII	GTYRAC	1 cut(s)	615
HinfI	GANTC	6 cut(s)	90, 286, 317, 506, 886, 1019
HpaI	GTTAAC	1 cut(s)	615
HpaII	CCGG	1 cut(s)	1007
HphI	GGTGA	3 cut(s)	143, 536, 931
Hpy166II	GTNNAC	4 cut(s)	148, 527, 615, 963
Hpy188I	TCNGA	5 cut(s)	27, 346, 778, 799, 1026
Hpy188III	TCNNGA	4 cut(s)	377, 510, 740, 1007
Hpy8I	GTNNAC	4 cut(s)	148, 527, 615, 963
HpyAV	CCTTC	5 cut(s)	22, 136, 450, 737, 774
HpyCH4III	ACNGT	4 cut(s)	74, 619, 858, 929
HpyCH4IV	ACGT	2 cut(s)	63, 501
HpyCH4V	TGCA	6 cut(s)	191, 224, 268, 416, 582, 717
HpyF10VI	GCNNNNNNNGC	7 cut(s)	119, 212, 221, 256, 265, 298, 878
HpyF3I	CTNAG	3 cut(s)	246, 520, 1023
HpySE526I	ACGT	2 cut(s)	63, 501
Hsp92I	GRCGYC	1 cut(s)	22
Hsp92II	CATG	2 cut(s)	380, 919
HspAI	GCGC	4 cut(s)	168, 259, 872, 874
Kpn2I	TCCGGA	1 cut(s)	1006
KspAI	GTTAAC	1 cut(s)	615
LmnI	GCTCC	1 cut(s)	266
Lsp1109I	GCAGC	1 cut(s)	428
MaeI	CTAG	2 cut(s)	510, 759
MaeII	ACGT	2 cut(s)	63, 501
MaeIII	GTNAC	2 cut(s)	385, 408
MbiI	CCGCTC	1 cut(s)	165
MboII	GAAGA	4 cut(s)	206, 410, 744, 827
MhlI	GDGCHC	2 cut(s)	53, 208
MlsI	TGGCCA	1 cut(s)	68
MluCI	AATT	5 cut(s)	479, 687, 805, 811, 1001
MluNI	TGGCCA	1 cut(s)	68
MlyI	GAGTC	2 cut(s)	84, 1013
Mox20I	TGGCCA	1 cut(s)	68
Mph1103I	ATGCAT	1 cut(s)	226
MroI	TCCGGA	1 cut(s)	1006
MscI	TGGCCA	1 cut(s)	68
MseI	TTAA	7 cut(s)	8, 350, 614, 621, 686, 818, 1031
Msp20I	TGGCCA	1 cut(s)	68
MspI	CCGG	1 cut(s)	1007
MspR9I	CCNGG	1 cut(s)	360
Mva1269I	GAATGC	1 cut(s)	226
MvaI	CCWGG	1 cut(s)	360
MvnI	CGCG	2 cut(s)	152, 874
MwoI	GCNNNNNNNGC	7 cut(s)	119, 212, 221, 256, 265, 298, 878
NlaIII	CATG	2 cut(s)	380, 919
NmeAIII	GCCGAG	1 cut(s)	332
NmuCI	GTSAC	1 cut(s)	385
NsiI	ATGCAT	1 cut(s)	226
NspV	TTCGAA	1 cut(s)	449
PagI	TCATGA	1 cut(s)	376
PauI	GCGCGC	1 cut(s)	872
PcsI	WCGNNNNNNNCGW	2 cut(s)	19, 156
PctI	GAATGC	1 cut(s)	226
PfeI	GAWTC	4 cut(s)	286, 317, 506, 886
PflFI	GACNNNGTC	1 cut(s)	383
PkrI	GCNGC	5 cut(s)	112, 124, 154, 167, 418
PleI	GAGTC	2 cut(s)	84, 1013
PpsI	GAGTC	2 cut(s)	84, 1013
Ppu21I	YACGTR	1 cut(s)	64
PpuMI	RGGWCCY	1 cut(s)	710
PshBI	ATTAAT	1 cut(s)	686
Psp1406I	AACGTT	1 cut(s)	501
Psp5II	RGGWCCY	1 cut(s)	710
Psp6I	CCWGG	1 cut(s)	358
PspGI	CCWGG	1 cut(s)	358
PspPI	GGNCC	4 cut(s)	77, 304, 607, 710
PspPPI	RGGWCCY	1 cut(s)	710
PsyI	GACNNNGTC	1 cut(s)	383
PteI	GCGCGC	1 cut(s)	872
RsaI	GTAC	3 cut(s)	149, 278, 629
RsaNI	GTAC	3 cut(s)	148, 277, 628
SaqAI	TTAA	7 cut(s)	8, 350, 614, 621, 686, 818, 1031
SatI	GCNGC	5 cut(s)	111, 123, 153, 166, 417
Sau96I	GGNCC	4 cut(s)	77, 304, 607, 710
SchI	GAGTC	2 cut(s)	84, 1013
ScrFI	CCNGG	1 cut(s)	360
SduI	GDGCHC	2 cut(s)	53, 208
SetI	ASST	8 cut(s)	60, 66, 252, 504, 526, 598, 715, 766
SfuI	TTCGAA	1 cut(s)	449
SinI	GGWCC	2 cut(s)	607, 710
SmlI	CTYRAG	2 cut(s)	769, 946
SmoI	CTYRAG	2 cut(s)	769, 946
Sse9I	AATT	5 cut(s)	479, 687, 805, 811, 1001
SsiI	CCGC	7 cut(s)	110, 113, 122, 152, 165, 231, 747
SspI	AATATT	1 cut(s)	1013
SspMI	CTAG	2 cut(s)	510, 759
StyD4I	CCNGG	1 cut(s)	358
TaaI	ACNGT	4 cut(s)	74, 619, 858, 929
TaiI	ACGT	2 cut(s)	66, 504
TaqI	TCGA	2 cut(s)	47, 449
TaqII	GACCGA	1 cut(s)	834
TasI	AATT	5 cut(s)	479, 687, 805, 811, 1001
TauI	GCSGC	4 cut(s)	113, 125, 155, 168
TfiI	GAWTC	4 cut(s)	286, 317, 506, 886
Tru1I	TTAA	7 cut(s)	8, 350, 614, 621, 686, 818, 1031
Tru9I	TTAA	7 cut(s)	8, 350, 614, 621, 686, 818, 1031
TscAI	CASTG	3 cut(s)	90, 394, 934
TseFI	GTSAC	1 cut(s)	385
TseI	GCWGC	1 cut(s)	416
Tsp45I	GTSAC	1 cut(s)	385
TspDTI	ATGAA	6 cut(s)	365, 441, 492, 504, 606, 690
TspRI	CASTG	3 cut(s)	90, 394, 934
Tth111I	GACNNNGTC	1 cut(s)	383
VpaK11BI	GGWCC	2 cut(s)	607, 710
VspI	ATTAAT	1 cut(s)	686
XapI	RAATTY	4 cut(s)	479, 805, 811, 1001
XbaI	TCTAGA	1 cut(s)	509
XcmI	CCANNNNNNNNNTGG	1 cut(s)	61
XspI	CTAG	2 cut(s)	510, 759
Zsp2I	ATGCAT	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.