Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0011370

Physical Location & Seq

Genomic Coordinates Forward (+)

16032057 .. 16037768

Gene Structure 5712 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g24670.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGGTTTGGCGAGATTTGGGCGTCCGAAGGGAGCCTTGAGCAGCCCCAATCTCTTCGTCGCTAACTGTGGGCCCGCCGTGGGGCTCTCCCACGACGCCATTGCCACCGCCTTTGGCTCCTTCGGTCAAGTCTCAGGCGTCCACGCCGCCGACGACACCGGCGCTCGTGTCGTTGTCTCCTTCGCCCAAGAGAGCTCTGCCCAGAACGCCTTGAATGCCTTGCATGGCCGCCCTTGTCCTGACCTCAAGGGTCGCACCTTGCACATTAGATACTCTGTTCTTCAACCCACCTCAATGGGTCGAGTTGATGACTCTGTGGAAGTGTCTTTACTGCATTCGGAGCTGAAAATTCCTGGCCTTTACTTGTTCCATGATTTCGTCACTGCGAAAGAGGAGGAGGAGCTGCTTGCGGCAGTTGATGAAAGGCCCTGGAAGAATCTTGCGAAAAGAAGGGTTCAGCATTATGGCTATGAGTTTTGTTATGAGACAAGGAATGTTGATTCTAAGAAGAATTTAGGCGAATTTCCATCATTTGTTTCTCCTATACTGGAAAGAATATCTATGCTCTCCAAGCGTGAGGATGTTGAAACTATAGCTTTGGACCAATTAACGGTTAATGAGTATCCACCTGGGGTGGGCTTGTCACCACATATAGACACCCATTCTGCTTTTGAAGGACTAATTTTCAGCCTTTCGCTAGCAGGGCCTTGCATCATGGAGTTCAGAAGATATTTTGAAGGTGGTTGGCTTCCTAGAACTTCCTCAAGTATTGATATCGAAACGGAAAATTCTGAAAACAATTCGAATTTCTTAAGGAGGGCTATATATCTTCCCCCTCGGTCTTTGTTACTATTATCTGGAGAGGCTCGCTATGCTTGGCATCACTACATTCCACATCATAAGATTGACAAGGTGAAAGGCAGTGTGATCAGAAGAGGCTCAAGGAGGGTGTCTTTCACAATTCGTAAGGTCAGAACAACTCCTTGCCAATGTGAATTTCCGCTATACTGTGATTCTCAGAGCTACTCTGATGGTTTCTCCATCGAGTTGAGGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0001510 GO:0002097 GO:0002098 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0008198 GO:0008270 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016300 GO:0016491 GO:0016705 GO:0016706 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0051213 GO:0055114 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy_2

Protein Analysis

353

Amino Acids

39.31

Weight (kDa)

7.21

Isoelectric Point (pI)

48.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy_2	PF13532	119 - 322	1.1e-17	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31600 AT1G31600 AT1G31600 AT1G31600
fragaria_vesca	FvH4_5g24670 FvH4_5g24670 FvH4_5g24670
malus_domestica	MD06G1012100.v1.1
prunus_persica	Prupe.5G014800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0215051
rosa_laevigata	RLG00000002696
rosa_multiflora	Rmu_sc0016046.1_g000004
rosa_roxburghii	Rroxscaffold_3G00244630
rosa_rugosa	Rorug07G0149700 Rorug07G0149800
rosa_samantha	Rh7AG286800 Rh7BG278300 Rh7CG306200 Rh7DG290300
rosa_wichuraiana	Rw7G024460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	75, 108, 147, 229, 410, 1001
AcoI	YGGCCR	1 cut(s)	226
AcsI	RAATTY	6 cut(s)	348, 511, 521, 787, 805, 995
AcyI	GRCGYC	3 cut(s)	22, 96, 138
AfiI	CCNNNNNNNGG	4 cut(s)	80, 81, 610, 635
AflII	CTTAAG	1 cut(s)	811
AgsI	TTSAA	5 cut(s)	214, 284, 587, 674, 737
AjnI	CCWGG	3 cut(s)	352, 428, 628
AjuI	GAANNNNNNNTTGG	2 cut(s)	981, 1013
AluBI	AGCT	5 cut(s)	195, 343, 403, 596, 1023
AluI	AGCT	5 cut(s)	195, 343, 403, 596, 1023
Alw21I	GWGCWC	1 cut(s)	197
Alw26I	GTCTC	3 cut(s)	136, 181, 479
AoxI	GGCC	5 cut(s)	71, 226, 355, 425, 704
ApaI	GGGCCC	1 cut(s)	75
ApeKI	GCWGC	2 cut(s)	42, 403
ApoI	RAATTY	6 cut(s)	348, 511, 521, 787, 805, 995
AspLEI	GCGC	1 cut(s)	164
AspS9I	GGNCC	5 cut(s)	71, 72, 426, 601, 704
AsuHPI	GGTGA	2 cut(s)	636, 925
AsuII	TTCGAA	1 cut(s)	803
AsuNHI	GCTAGC	1 cut(s)	697
AvaII	GGWCC	1 cut(s)	601
BaeGI	GKGCMC	1 cut(s)	75
BanII	GRGCYC	3 cut(s)	75, 87, 197
BarI	GAAGNNNNNNTAC	2 cut(s)	312, 344
BauI	CACGAG	1 cut(s)	165
Bbv12I	GWGCWC	1 cut(s)	197
BbvI	GCAGC	2 cut(s)	54, 390
BccI	CCATC	3 cut(s)	535, 1025, 1049
BceAI	ACGGC	1 cut(s)	62
BcgI	CGANNNNNNTGC	2 cut(s)	83, 117
BciT130I	CCWGG	3 cut(s)	354, 430, 630
BciVI	GTATCC	1 cut(s)	633
BclI	TGATCA	1 cut(s)	927
BcoDI	GTCTC	3 cut(s)	136, 181, 479
BfaI	CTAG	2 cut(s)	698, 753
BfmI	CTRYAG	1 cut(s)	591
BfoI	RGCGCY	1 cut(s)	165
BfrI	CTTAAG	1 cut(s)	811
BfuI	GTATCC	1 cut(s)	633
BisI	GCNGC	5 cut(s)	43, 147, 229, 404, 411
BlsI	GCNGC	5 cut(s)	44, 148, 230, 405, 412
Bme1390I	CCNGG	3 cut(s)	354, 430, 630
Bme18I	GGWCC	1 cut(s)	601
BmgT120I	GGNCC	5 cut(s)	71, 72, 426, 601, 704
BmiI	GGNNCC	3 cut(s)	34, 73, 118
BmrFI	CCNGG	3 cut(s)	354, 430, 630
BmsI	GCATC	2 cut(s)	720, 889
BmtI	GCTAGC	1 cut(s)	701
BpmI	CTGGAG	1 cut(s)	879
Bpu14I	TTCGAA	1 cut(s)	803
BpuEI	CTTGAG	4 cut(s)	58, 230, 748, 925
BsaHI	GRCGYC	3 cut(s)	22, 96, 138
BsaJI	CCNNGG	4 cut(s)	78, 428, 629, 836
Bsc4I	CCNNNNNNNGG	4 cut(s)	80, 81, 610, 635
Bse118I	RCCGGY	1 cut(s)	158
Bse1I	ACTGG	1 cut(s)	552
Bse3DI	GCAATG	1 cut(s)	99
BseBI	CCWGG	3 cut(s)	354, 430, 630
BseDI	CCNNGG	4 cut(s)	78, 428, 629, 836
BseGI	GGATG	1 cut(s)	586
BseLI	CCNNNNNNNGG	4 cut(s)	80, 81, 610, 635
BseMI	GCAATG	1 cut(s)	99
BseMII	CTCAG	2 cut(s)	147, 1031
BseNI	ACTGG	1 cut(s)	552
BseRI	GAGGAG	3 cut(s)	407, 410, 413
BseSI	GKGCMC	1 cut(s)	75
BseXI	GCAGC	2 cut(s)	54, 390
BshFI	GGCC	5 cut(s)	73, 228, 357, 427, 706
BsiHKAI	GWGCWC	1 cut(s)	197
BsiSI	CCGG	1 cut(s)	159
BslI	CCNNNNNNNGG	4 cut(s)	80, 81, 610, 635
BsmAI	GTCTC	3 cut(s)	136, 181, 479
BsmI	GAATGC	2 cut(s)	220, 334
BsnI	GGCC	5 cut(s)	73, 228, 357, 427, 706
Bsp119I	TTCGAA	1 cut(s)	803
Bsp120I	GGGCCC	1 cut(s)	71
Bsp1286I	GDGCHC	3 cut(s)	75, 87, 197
Bsp143I	GATC	1 cut(s)	927
BspACI	CCGC	6 cut(s)	75, 108, 147, 229, 410, 1001
BspANI	GGCC	5 cut(s)	73, 228, 357, 427, 706
BspCNI	CTCAG	2 cut(s)	146, 1030
BspLI	GGNNCC	3 cut(s)	34, 73, 118
BspOI	GCTAGC	1 cut(s)	701
BspT104I	TTCGAA	1 cut(s)	803
BspTI	CTTAAG	1 cut(s)	811
BsrDI	GCAATG	1 cut(s)	99
BsrFI	RCCGGY	1 cut(s)	158
BsrI	ACTGG	1 cut(s)	552
BssAI	RCCGGY	1 cut(s)	158
BssECI	CCNNGG	4 cut(s)	78, 428, 629, 836
BssMI	GATC	1 cut(s)	927
BssNI	GRCGYC	3 cut(s)	22, 96, 138
BssSI	CACGAG	1 cut(s)	165
Bst2BI	CACGAG	1 cut(s)	165
Bst2UI	CCWGG	3 cut(s)	354, 430, 630
Bst4CI	ACNGT	3 cut(s)	68, 613, 1010
Bst6I	CTCTTC	2 cut(s)	59, 928
BstACI	GRCGYC	3 cut(s)	22, 96, 138
BstAFI	CTTAAG	1 cut(s)	811
BstBI	TTCGAA	1 cut(s)	803
BstC8I	GCNNGC	4 cut(s)	75, 408, 699, 868
BstDEI	CTNAG	3 cut(s)	133, 504, 1017
BstDSI	CCRYGG	1 cut(s)	78
BstF5I	GGATG	1 cut(s)	586
BstH2I	RGCGCY	1 cut(s)	165
BstHHI	GCGC	1 cut(s)	164
BstKTI	GATC	1 cut(s)	930
BstMAI	GTCTC	3 cut(s)	136, 181, 479
BstMBI	GATC	1 cut(s)	927
BstMWI	GCNNNNNNNGC	6 cut(s)	206, 215, 340, 571, 703, 872
BstNI	CCWGG	3 cut(s)	354, 430, 630
BstSCI	CCNGG	3 cut(s)	352, 428, 628
BstSFI	CTRYAG	1 cut(s)	591
BstSLI	GKGCMC	1 cut(s)	75
BstV1I	GCAGC	2 cut(s)	54, 390
BstXI	CCANNNNNNTGG	1 cut(s)	295
BsuI	GTATCC	1 cut(s)	633
BsuRI	GGCC	5 cut(s)	73, 228, 357, 427, 706
BtgI	CCRYGG	1 cut(s)	78
BtsCI	GGATG	1 cut(s)	586
BtsI	GCAGTG	2 cut(s)	381, 928
BtsIMutI	CAGTG	2 cut(s)	381, 928
Cac8I	GCNNGC	4 cut(s)	75, 408, 699, 868
CfoI	GCGC	1 cut(s)	164
Cfr10I	RCCGGY	1 cut(s)	158
Cfr13I	GGNCC	5 cut(s)	71, 72, 426, 601, 704
CseI	GACGC	3 cut(s)	11, 104, 127
CspCI	CAANNNNNGTGG	2 cut(s)	94, 129
CviAII	CATG	3 cut(s)	224, 371, 715
DdeI	CTNAG	3 cut(s)	133, 504, 1017
DpnI	GATC	1 cut(s)	929
DpnII	GATC	1 cut(s)	927
EaeI	YGGCCR	1 cut(s)	226
Eam1104I	CTCTTC	2 cut(s)	59, 928
EarI	CTCTTC	2 cut(s)	59, 928
Ecl136II	GAGCTC	1 cut(s)	195
Eco24I	GRGCYC	3 cut(s)	75, 87, 197
Eco32I	GATATC	1 cut(s)	775
Eco47I	GGWCC	1 cut(s)	601
Eco53kI	GAGCTC	1 cut(s)	195
EcoICRI	GAGCTC	1 cut(s)	195
EcoO109I	RGGNCCY	2 cut(s)	426, 704
EcoRII	CCWGG	3 cut(s)	352, 428, 628
EcoRV	GATATC	1 cut(s)	775
EcoT38I	GRGCYC	3 cut(s)	75, 87, 197
FaeI	CATG	3 cut(s)	227, 374, 718
FalI	AAGNNNNNCTT	2 cut(s)	20, 52
FatI	CATG	3 cut(s)	223, 370, 714
FauI	CCCGC	1 cut(s)	82
FbaI	TGATCA	1 cut(s)	927
Fnu4HI	GCNGC	5 cut(s)	43, 147, 229, 404, 411
FokI	GGATG	1 cut(s)	593
FriOI	GRGCYC	3 cut(s)	75, 87, 197
Fsp4HI	GCNGC	5 cut(s)	43, 147, 229, 404, 411
FspBI	CTAG	2 cut(s)	698, 753
GlaI	GCGC	1 cut(s)	163
GluI	GCNGC	5 cut(s)	43, 147, 229, 404, 411
GsuI	CTGGAG	1 cut(s)	879
HaeII	RGCGCY	1 cut(s)	165
HaeIII	GGCC	5 cut(s)	73, 228, 357, 427, 706
HapII	CCGG	1 cut(s)	159
HgaI	GACGC	3 cut(s)	11, 104, 127
HhaI	GCGC	1 cut(s)	164
Hin1I	GRCGYC	3 cut(s)	22, 96, 138
Hin1II	CATG	3 cut(s)	227, 374, 718
Hin6I	GCGC	1 cut(s)	162
HinP1I	GCGC	1 cut(s)	162
HinfI	GANTC	4 cut(s)	311, 436, 500, 1013
HpaII	CCGG	1 cut(s)	159
HphI	GGTGA	2 cut(s)	636, 925
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188I	TCNGA	8 cut(s)	27, 340, 725, 793, 932, 974, 1020, 1030
Hpy188III	TCNNGA	2 cut(s)	239, 858
Hpy8I	GTNNAC	1 cut(s)	142
Hpy99I	CGWCG	3 cut(s)	62, 98, 155
HpyAV	CCTTC	6 cut(s)	22, 130, 190, 444, 668, 731
HpyCH4III	ACNGT	3 cut(s)	68, 613, 1010
HpyCH4V	TGCA	4 cut(s)	223, 262, 334, 711
HpyF10VI	GCNNNNNNNGC	6 cut(s)	206, 215, 340, 571, 703, 872
HpyF3I	CTNAG	3 cut(s)	133, 504, 1017
Hsp92I	GRCGYC	3 cut(s)	22, 96, 138
Hsp92II	CATG	3 cut(s)	227, 374, 718
HspAI	GCGC	1 cut(s)	162
Ksp22I	TGATCA	1 cut(s)	927
Kzo9I	GATC	1 cut(s)	927
LmnI	GCTCC	4 cut(s)	32, 122, 340, 400
Lsp1109I	GCAGC	2 cut(s)	54, 390
LweI	GCATC	2 cut(s)	720, 889
MaeI	CTAG	2 cut(s)	698, 753
MaeIII	GTNAC	3 cut(s)	379, 642, 846
MalI	GATC	1 cut(s)	929
MboI	GATC	1 cut(s)	927
MboII	GAAGA	7 cut(s)	46, 272, 445, 520, 738, 821, 945
MhlI	GDGCHC	3 cut(s)	75, 87, 197
MlyI	GAGTC	1 cut(s)	305
MseI	TTAA	3 cut(s)	608, 615, 812
MslI	CAYNNNNRTG	1 cut(s)	293
MspCI	CTTAAG	1 cut(s)	811
MspI	CCGG	1 cut(s)	159
MspR9I	CCNGG	3 cut(s)	354, 430, 630
Mva1269I	GAATGC	2 cut(s)	220, 334
MvaI	CCWGG	3 cut(s)	354, 430, 630
MwoI	GCNNNNNNNGC	6 cut(s)	206, 215, 340, 571, 703, 872
NdeII	GATC	1 cut(s)	927
NheI	GCTAGC	1 cut(s)	697
NlaIII	CATG	3 cut(s)	227, 374, 718
NlaIV	GGNNCC	3 cut(s)	34, 73, 118
NmuCI	GTSAC	2 cut(s)	379, 642
NspV	TTCGAA	1 cut(s)	803
PcsI	WCGNNNNNNNCGW	1 cut(s)	150
PctI	GAATGC	2 cut(s)	220, 334
PfeI	GAWTC	3 cut(s)	436, 500, 1013
PkrI	GCNGC	5 cut(s)	44, 148, 230, 405, 412
PleI	GAGTC	1 cut(s)	305
PpsI	GAGTC	1 cut(s)	305
Psp124BI	GAGCTC	1 cut(s)	197
Psp6I	CCWGG	3 cut(s)	352, 428, 628
PspGI	CCWGG	3 cut(s)	352, 428, 628
PspN4I	GGNNCC	3 cut(s)	34, 73, 118
PspOMI	GGGCCC	1 cut(s)	71
PspPI	GGNCC	5 cut(s)	71, 72, 426, 601, 704
RseI	CAYNNNNRTG	1 cut(s)	293
SacI	GAGCTC	1 cut(s)	197
SaqAI	TTAA	3 cut(s)	608, 615, 812
SatI	GCNGC	5 cut(s)	43, 147, 229, 404, 411
Sau3AI	GATC	1 cut(s)	927
Sau96I	GGNCC	5 cut(s)	71, 72, 426, 601, 704
SchI	GAGTC	1 cut(s)	305
ScrFI	CCNGG	3 cut(s)	354, 430, 630
SduI	GDGCHC	3 cut(s)	75, 87, 197
SfaNI	GCATC	2 cut(s)	720, 889
SfcI	CTRYAG	1 cut(s)	591
SfuI	TTCGAA	1 cut(s)	803
SgrAI	CRCCGGYG	1 cut(s)	158
SinI	GGWCC	1 cut(s)	601
SmiMI	CAYNNNNRTG	1 cut(s)	293
SmlI	CTYRAG	5 cut(s)	37, 245, 763, 811, 940
SmoI	CTYRAG	5 cut(s)	37, 245, 763, 811, 940
SsiI	CCGC	6 cut(s)	75, 108, 147, 229, 410, 1001
SspMI	CTAG	2 cut(s)	698, 753
SstI	GAGCTC	1 cut(s)	197
StyD4I	CCNGG	3 cut(s)	352, 428, 628
TaaI	ACNGT	3 cut(s)	68, 613, 1010
TaqI	TCGA	4 cut(s)	301, 777, 803, 1044
TaqII	GACCGA	2 cut(s)	113, 828
TauI	GCSGC	3 cut(s)	149, 231, 413
TfiI	GAWTC	3 cut(s)	436, 500, 1013
Tru1I	TTAA	3 cut(s)	608, 615, 812
Tru9I	TTAA	3 cut(s)	608, 615, 812
TscAI	CASTG	2 cut(s)	388, 928
TseFI	GTSAC	2 cut(s)	379, 642
TseI	GCWGC	2 cut(s)	42, 403
Tsp45I	GTSAC	2 cut(s)	379, 642
TspDTI	ATGAA	1 cut(s)	435
TspGWI	ACGGA	1 cut(s)	797
TspRI	CASTG	2 cut(s)	388, 928
Vha464I	CTTAAG	1 cut(s)	811
VpaK11BI	GGWCC	1 cut(s)	601
XapI	RAATTY	6 cut(s)	348, 511, 521, 787, 805, 995
XspI	CTAG	2 cut(s)	698, 753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.