Rh7DG456000

Encodes a close homolog of the Cauliflower OR (Orange) protein. The function of OR is to induce the differentiation of proplastids or other noncolored plastids into chromoplasts for carotenoid accumulation. Both proteins contain a Cysteine-rich

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
Physical Location & Seq
Forward (+)
64846645 .. 64848783
2139 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG456000.1

Sequence Viewer

Length: 306 bp
ATGCTTCCATCAGTTTCTTCTTTCTTCTATGGCCATCGCTCGATCATAGTGGTGGAGGTTTCATCTTCGTCGACGAGTTTTTGTCCGTACCGGAATTCGCACCCAATCCTCTCTCTCAGGCTGAGGATACAACAGAGGATTAAAAGCGCAGAGCTCAGGATGTTAACCGAGGAGCAAGAAAATGAACTTCTGAACTTTACACCATTCATTCCATTGATGTCTCCCTTGGAGCATCAGAGATGTAAATATTGTCTTGGAACTGCTTATGGCTCATCTTCTGATGCAATGACTATAATCCAACAATGA

Protein Analysis

101

Amino Acids

11.54

Weight (kDa)

7.76

Isoelectric Point (pI)

59.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 71
AcoI YGGCCR 1 cut(s) 31
AcsI RAATTY 1 cut(s) 94
AfaI GTAC 1 cut(s) 89
AluBI AGCT 1 cut(s) 154
AluI AGCT 1 cut(s) 154
Alw21I GWGCWC 1 cut(s) 156
Alw26I GTCTC 1 cut(s) 225
AoxI GGCC 1 cut(s) 31
ApoI RAATTY 1 cut(s) 94
AspLEI GCGC 1 cut(s) 149
BalI TGGCCA 1 cut(s) 33
BanII GRGCYC 1 cut(s) 156
Bbv12I GWGCWC 1 cut(s) 156
BbvCI CCTCAGC 1 cut(s) 122
BccI CCATC 2 cut(s) 16, 42
BciVI GTATCC 1 cut(s) 120
BcoDI GTCTC 1 cut(s) 225
BfuI GTATCC 1 cut(s) 120
BmsI GCATC 2 cut(s) 241, 271
Bpu10I CCTNAGC 2 cut(s) 122, 155
BsaJI CCNNGG 2 cut(s) 168, 225
BsaWI WCCGGW 1 cut(s) 90
Bse3DI GCAATG 1 cut(s) 291
BseDI CCNNGG 2 cut(s) 168, 225
BseGI GGATG 1 cut(s) 165
BseMI GCAATG 1 cut(s) 291
BseMII CTCAG 3 cut(s) 113, 130, 169
BseRI GAGGAG 1 cut(s) 185
BshFI GGCC 1 cut(s) 33
BsiHKAI GWGCWC 1 cut(s) 156
BsiSI CCGG 1 cut(s) 91
BsmAI GTCTC 1 cut(s) 225
BsnI GGCC 1 cut(s) 33
Bsp1286I GDGCHC 1 cut(s) 156
Bsp143I GATC 1 cut(s) 42
BspANI GGCC 1 cut(s) 33
BspCNI CTCAG 3 cut(s) 114, 129, 168
BsrDI GCAATG 1 cut(s) 291
BssECI CCNNGG 2 cut(s) 168, 225
BssMI GATC 1 cut(s) 42
BssT1I CCWWGG 1 cut(s) 225
BstDEI CTNAG 3 cut(s) 116, 122, 155
BstF5I GGATG 1 cut(s) 165
BstHHI GCGC 1 cut(s) 149
BstKTI GATC 1 cut(s) 45
BstMAI GTCTC 1 cut(s) 225
BstMBI GATC 1 cut(s) 42
BsuI GTATCC 1 cut(s) 120
BsuRI GGCC 1 cut(s) 33
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 1 cut(s) 165
CfoI GCGC 1 cut(s) 149
Csp6I GTAC 1 cut(s) 88
CviJI RGCY 4 cut(s) 33, 121, 154, 270
CviKI_1 RGCY 4 cut(s) 33, 121, 154, 270
CviQI GTAC 1 cut(s) 88
DdeI CTNAG 3 cut(s) 116, 122, 155
DpnI GATC 1 cut(s) 44
DpnII GATC 1 cut(s) 42
EaeI YGGCCR 1 cut(s) 31
Ecl136II GAGCTC 1 cut(s) 154
Eco130I CCWWGG 1 cut(s) 225
Eco24I GRGCYC 1 cut(s) 156
Eco53kI GAGCTC 1 cut(s) 154
EcoICRI GAGCTC 1 cut(s) 154
EcoRI GAATTC 1 cut(s) 94
EcoT14I CCWWGG 1 cut(s) 225
EcoT38I GRGCYC 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 225
FaiI YATR 4 cut(s) 30, 47, 267, 293
FblI GTMKAC 1 cut(s) 71
FokI GGATG 1 cut(s) 172
FriOI GRGCYC 1 cut(s) 156
GlaI GCGC 1 cut(s) 148
HaeIII GGCC 1 cut(s) 33
HapII CCGG 1 cut(s) 91
HhaI GCGC 1 cut(s) 149
Hin6I GCGC 1 cut(s) 147
HinP1I GCGC 1 cut(s) 147
HincII GTYRAC 2 cut(s) 72, 165
HindII GTYRAC 2 cut(s) 72, 165
HpaI GTTAAC 1 cut(s) 165
HpaII CCGG 1 cut(s) 91
Hpy166II GTNNAC 2 cut(s) 72, 165
Hpy188I TCNGA 3 cut(s) 192, 237, 280
Hpy188III TCNNGA 1 cut(s) 157
Hpy8I GTNNAC 2 cut(s) 72, 165
Hpy99I CGWCG 2 cut(s) 73, 76
HpyCH4V TGCA 1 cut(s) 284
HpyF3I CTNAG 3 cut(s) 116, 122, 155
HspAI GCGC 1 cut(s) 147
KspAI GTTAAC 1 cut(s) 165
Kzo9I GATC 1 cut(s) 42
LmnI GCTCC 2 cut(s) 172, 229
LpnPI CCDG 3 cut(s) 103, 104, 142
LweI GCATC 2 cut(s) 241, 271
MalI GATC 1 cut(s) 44
MboI GATC 1 cut(s) 42
MboII GAAGA 4 cut(s) 9, 16, 57, 267
MhlI GDGCHC 1 cut(s) 156
MlsI TGGCCA 1 cut(s) 33
MluCI AATT 1 cut(s) 94
MluNI TGGCCA 1 cut(s) 33
MnlI CCTC 5 cut(s) 49, 117, 119, 129, 163
Mox20I TGGCCA 1 cut(s) 33
MscI TGGCCA 1 cut(s) 33
MseI TTAA 2 cut(s) 141, 164
MslI CAYNNNNRTG 1 cut(s) 50
Msp20I TGGCCA 1 cut(s) 33
MspI CCGG 1 cut(s) 91
NdeII GATC 1 cut(s) 42
Psp124BI GAGCTC 1 cut(s) 156
RsaI GTAC 1 cut(s) 89
RsaNI GTAC 1 cut(s) 88
RseI CAYNNNNRTG 1 cut(s) 50
SacI GAGCTC 1 cut(s) 156
SalI GTCGAC 1 cut(s) 70
SaqAI TTAA 2 cut(s) 141, 164
Sau3AI GATC 1 cut(s) 42
SduI GDGCHC 1 cut(s) 156
SetI ASST 2 cut(s) 60, 156
SfaNI GCATC 2 cut(s) 241, 271
SgeI CNNG 9 cut(s) 52, 87, 103, 130, 169, 181, 188, 238, 266
SgrDI CGTCGACG 1 cut(s) 70
SmiMI CAYNNNNRTG 1 cut(s) 50
Sse9I AATT 1 cut(s) 94
SspI AATATT 1 cut(s) 248
SstI GAGCTC 1 cut(s) 156
StyI CCWWGG 1 cut(s) 225
TaqI TCGA 2 cut(s) 41, 71
TasI AATT 1 cut(s) 94
Tru1I TTAA 2 cut(s) 141, 164
Tru9I TTAA 2 cut(s) 141, 164
TspDTI ATGAA 3 cut(s) 51, 196, 198
TspGWI ACGGA 1 cut(s) 75
XapI RAATTY 1 cut(s) 94
XmiI GTMKAC 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.