Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0015740

Physical Location & Seq

Genomic Coordinates Reverse (-)

34570691 .. 34573392

Gene Structure 2702 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G023610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGTTGACTGGCAAGAGACTCCAGTTGCAGGTTGGACCTATTGTTGGACTTGATCAATATGTCAACTACTTCAAAATTCAGCTGAGGATACAACAGAGGATTAAAAGCGCAGAGCTCAGGATGTTAACCGAGGAGCAAGAAAATGAACTTCCAAACTTTACACCATTCATTCAATTGATGTCTCCCTTGCTGAGTTTCCTCTCTGAACTATTCTGTTTCTATTTTGATGATGCTCGCAGCCTGTTATTAGTATTTAACTCGATGCTTAAAACTTTAAGATTATATACAATGATATGTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0019216 GO:0019222 GO:0019747 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031647 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045828 GO:0045834 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050821 GO:0065007 GO:0065008 GO:0080090 GO:1904143

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

100

Amino Acids

11.83

Weight (kDa)

7.75

Isoelectric Point (pI)

47.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0015740)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0122341 RchiOBHm_Chr3g0480011 RchiOBHm_Chr6g0278231 RchiOBHm_Chr7g0189681
rosa_roxburghii	Rroxscaffold_1G00001830 Rroxscaffold_5G00336630
rosa_rugosa	Rorug05G0309500 Rorug06G0001300 Rorug06G0089900 Rorug06G0090000 Rorug07G0149800
rosa_samantha	Rh6BG444000 Rh6CG471100 Rh6DG222900 Rh7DG456000
rosa_wichuraiana	Rw2G023610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	19
AcsI	RAATTY	1 cut(s)	75
AfiI	CCNNNNNNNGG	2 cut(s)	28, 44
AgsI	TTSAA	2 cut(s)	73, 173
AluBI	AGCT	2 cut(s)	82, 115
AluI	AGCT	2 cut(s)	82, 115
Alw21I	GWGCWC	1 cut(s)	117
Alw26I	GTCTC	2 cut(s)	10, 186
ApeKI	GCWGC	1 cut(s)	237
ApoI	RAATTY	1 cut(s)	75
AspLEI	GCGC	1 cut(s)	110
AspS9I	GGNCC	1 cut(s)	35
AvaII	GGWCC	1 cut(s)	35
BanII	GRGCYC	1 cut(s)	117
Bbv12I	GWGCWC	1 cut(s)	117
BbvCI	CCTCAGC	1 cut(s)	83
BbvI	GCAGC	1 cut(s)	249
BciVI	GTATCC	1 cut(s)	81
BclI	TGATCA	1 cut(s)	52
BcoDI	GTCTC	2 cut(s)	10, 186
BfuAI	ACCTGC	1 cut(s)	19
BfuI	GTATCC	1 cut(s)	81
BisI	GCNGC	1 cut(s)	238
BlsI	GCNGC	1 cut(s)	239
Bme18I	GGWCC	1 cut(s)	35
BmgT120I	GGNCC	1 cut(s)	35
BmsI	GCATC	2 cut(s)	220, 252
BpmI	CTGGAG	1 cut(s)	5
Bpu10I	CCTNAGC	2 cut(s)	83, 116
BsaJI	CCNNGG	1 cut(s)	129
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 44
Bse1I	ACTGG	2 cut(s)	13, 22
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	1 cut(s)	126
BseLI	CCNNNNNNNGG	2 cut(s)	28, 44
BseMII	CTCAG	3 cut(s)	74, 130, 182
BseNI	ACTGG	2 cut(s)	13, 22
BseRI	GAGGAG	1 cut(s)	146
BseXI	GCAGC	1 cut(s)	249
BsiHKAI	GWGCWC	1 cut(s)	117
BslI	CCNNNNNNNGG	2 cut(s)	28, 44
BsmAI	GTCTC	2 cut(s)	10, 186
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp143I	GATC	1 cut(s)	52
BspCNI	CTCAG	3 cut(s)	75, 129, 183
BspMI	ACCTGC	1 cut(s)	19
BsrI	ACTGG	2 cut(s)	13, 22
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	1 cut(s)	52
BstC8I	GCNNGC	1 cut(s)	235
BstDEI	CTNAG	3 cut(s)	83, 116, 191
BstF5I	GGATG	1 cut(s)	126
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	1 cut(s)	55
BstMAI	GTCTC	2 cut(s)	10, 186
BstMBI	GATC	1 cut(s)	52
BstV1I	GCAGC	1 cut(s)	249
BsuI	GTATCC	1 cut(s)	81
BtsCI	GGATG	1 cut(s)	126
BveI	ACCTGC	1 cut(s)	19
Cac8I	GCNNGC	1 cut(s)	235
CfoI	GCGC	1 cut(s)	110
Cfr13I	GGNCC	1 cut(s)	35
CviJI	RGCY	3 cut(s)	82, 115, 240
CviKI_1	RGCY	3 cut(s)	82, 115, 240
DdeI	CTNAG	3 cut(s)	83, 116, 191
DpnI	GATC	1 cut(s)	54
DpnII	GATC	1 cut(s)	52
Ecl136II	GAGCTC	1 cut(s)	115
Eco24I	GRGCYC	1 cut(s)	117
Eco47I	GGWCC	1 cut(s)	35
Eco53kI	GAGCTC	1 cut(s)	115
EcoICRI	GAGCTC	1 cut(s)	115
EcoT38I	GRGCYC	1 cut(s)	117
FaiI	YATR	4 cut(s)	60, 283, 285, 295
FbaI	TGATCA	1 cut(s)	52
Fnu4HI	GCNGC	1 cut(s)	238
FokI	GGATG	1 cut(s)	133
FriOI	GRGCYC	1 cut(s)	117
Fsp4HI	GCNGC	1 cut(s)	238
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	1 cut(s)	238
GsuI	CTGGAG	1 cut(s)	5
HhaI	GCGC	1 cut(s)	110
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HincII	GTYRAC	3 cut(s)	6, 64, 126
HindII	GTYRAC	3 cut(s)	6, 64, 126
HinfI	GANTC	1 cut(s)	18
HpaI	GTTAAC	1 cut(s)	126
Hpy166II	GTNNAC	3 cut(s)	6, 64, 126
Hpy188I	TCNGA	1 cut(s)	205
Hpy188III	TCNNGA	1 cut(s)	118
Hpy8I	GTNNAC	3 cut(s)	6, 64, 126
HpyCH4V	TGCA	1 cut(s)	28
HpyF3I	CTNAG	3 cut(s)	83, 116, 191
HspAI	GCGC	1 cut(s)	108
Ksp22I	TGATCA	1 cut(s)	52
KspAI	GTTAAC	1 cut(s)	126
Kzo9I	GATC	1 cut(s)	52
LmnI	GCTCC	1 cut(s)	133
LpnPI	CCDG	4 cut(s)	14, 35, 103, 254
Lsp1109I	GCAGC	1 cut(s)	249
LweI	GCATC	2 cut(s)	220, 252
MalI	GATC	1 cut(s)	54
MboI	GATC	1 cut(s)	52
MfeI	CAATTG	1 cut(s)	173
MhlI	GDGCHC	1 cut(s)	117
MluCI	AATT	3 cut(s)	75, 173, 298
MlyI	GAGTC	1 cut(s)	12
MmeI	TCCRAC	2 cut(s)	13, 25
MnlI	CCTC	4 cut(s)	78, 90, 124, 209
MseI	TTAA	5 cut(s)	102, 125, 255, 267, 275
MspA1I	CMGCKG	1 cut(s)	82
MunI	CAATTG	1 cut(s)	173
NdeII	GATC	1 cut(s)	52
PkrI	GCNGC	1 cut(s)	239
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
Psp124BI	GAGCTC	1 cut(s)	117
PspPI	GGNCC	1 cut(s)	35
PvuII	CAGCTG	1 cut(s)	82
SacI	GAGCTC	1 cut(s)	117
SaqAI	TTAA	5 cut(s)	102, 125, 255, 267, 275
SatI	GCNGC	1 cut(s)	238
Sau3AI	GATC	1 cut(s)	52
Sau96I	GGNCC	1 cut(s)	35
SchI	GAGTC	1 cut(s)	12
SduI	GDGCHC	1 cut(s)	117
SetI	ASST	4 cut(s)	33, 40, 84, 117
SfaNI	GCATC	2 cut(s)	220, 252
SinI	GGWCC	1 cut(s)	35
Sse9I	AATT	3 cut(s)	75, 173, 298
SstI	GAGCTC	1 cut(s)	117
TaqI	TCGA	1 cut(s)	260
TasI	AATT	3 cut(s)	75, 173, 298
Tru1I	TTAA	5 cut(s)	102, 125, 255, 267, 275
Tru9I	TTAA	5 cut(s)	102, 125, 255, 267, 275
TseI	GCWGC	1 cut(s)	237
TspDTI	ATGAA	2 cut(s)	157, 159
VpaK11BI	GGWCC	1 cut(s)	35
XapI	RAATTY	1 cut(s)	75
XcmI	CCANNNNNNNNNTGG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.