Rorug05G0458900

Phosphopantetheine attachment site

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0016811
Physical Location & Seq
Forward (+)
63214326 .. 63215243
918 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0458900.1

Sequence Viewer

Length: 225 bp
ATGGCTGAAGCTCTAGTTGACACTCTCTTGCAGCATTTGGCTTCCATCACCCTTGACAAGGTTGAAAGAGAGCTGAGACCGGTTGTAGGTGTTGACACAGAAGTTGCAAACATTACTCCCAATCTTGAAGCTGTTCGAGCTGTGCTTGAGGATGCTGAGAGCAGACAACTGAAGGAGGACAATGCACTATGTAGCTTTACAGAAAATCTACCAAGCCAAGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AMP-binding Amino_oxidase Catalase Hexapep NAD_binding_8 PP-binding

Protein Analysis

74

Amino Acids

8.09

Weight (kDa)

4.32

Isoelectric Point (pI)

43.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 6 - 60 3.5e-06 Rx N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016811)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43570
malus_domestica MD03G1020900.v1.1 MD11G1022500.v1.1
prunus_persica Prupe.6G018300_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0078141
rosa_laevigata RLG00000036756
rosa_multiflora Rmu_sc0019972.1_g000001
rosa_roxburghii Rroxscaffold_1G00004000
rosa_rugosa Rorug05G0458900
rosa_samantha Rh5AG513500 Rh5BG536500 Rh5CG559900 Rh5DG548000
rosa_wichuraiana Rw5G047620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 2 cut(s) 27, 191
AfiI CCNNNNNNNGG 3 cut(s) 58, 86, 218
AgeI ACCGGT 1 cut(s) 79
AgsI TTSAA 2 cut(s) 65, 128
AluBI AGCT 5 cut(s) 11, 73, 131, 140, 195
AluI AGCT 5 cut(s) 11, 73, 131, 140, 195
Alw26I GTCTC 1 cut(s) 70
ApeKI GCWGC 1 cut(s) 31
AsiGI ACCGGT 1 cut(s) 79
Asp700I GAANNNNTTC 1 cut(s) 132
AsuHPI GGTGA 1 cut(s) 40
BbvI GCAGC 1 cut(s) 43
BccI CCATC 1 cut(s) 53
BcoDI GTCTC 1 cut(s) 70
BfaI CTAG 1 cut(s) 14
BisI GCNGC 1 cut(s) 32
BlsI GCNGC 1 cut(s) 33
BmsI GCATC 1 cut(s) 142
BpuEI CTTGAG 1 cut(s) 167
BsaI GGTCTC 1 cut(s) 70
BsaJI CCNNGG 1 cut(s) 217
BsaWI WCCGGW 1 cut(s) 79
Bsc4I CCNNNNNNNGG 3 cut(s) 58, 86, 218
Bse118I RCCGGY 1 cut(s) 79
BseDI CCNNGG 1 cut(s) 217
BseGI GGATG 1 cut(s) 157
BseLI CCNNNNNNNGG 3 cut(s) 58, 86, 218
BseMII CTCAG 2 cut(s) 65, 147
BseXI GCAGC 1 cut(s) 43
BshTI ACCGGT 1 cut(s) 79
BsiSI CCGG 1 cut(s) 80
BslI CCNNNNNNNGG 3 cut(s) 58, 86, 218
BsmAI GTCTC 1 cut(s) 70
Bso31I GGTCTC 1 cut(s) 70
BspCNI CTCAG 2 cut(s) 66, 148
BspTNI GGTCTC 1 cut(s) 70
BsrFI RCCGGY 1 cut(s) 79
BssAI RCCGGY 1 cut(s) 79
BssECI CCNNGG 1 cut(s) 217
BssT1I CCWWGG 1 cut(s) 217
BstDEI CTNAG 2 cut(s) 74, 156
BstENI CCTNNNNNAGG 1 cut(s) 56
BstF5I GGATG 1 cut(s) 157
BstMAI GTCTC 1 cut(s) 70
BstMWI GCNNNNNNNGC 1 cut(s) 137
BstV1I GCAGC 1 cut(s) 43
BtsCI GGATG 1 cut(s) 157
Cfr10I RCCGGY 1 cut(s) 79
CspAI ACCGGT 1 cut(s) 79
CviJI RGCY 9 cut(s) 5, 11, 41, 73, 131, 140, 195, 216, 222
CviKI_1 RGCY 9 cut(s) 5, 11, 41, 73, 131, 140, 195, 216, 222
DdeI CTNAG 2 cut(s) 74, 156
Eco130I CCWWGG 1 cut(s) 217
Eco31I GGTCTC 1 cut(s) 70
Eco57I CTGAAG 2 cut(s) 27, 191
EcoNI CCTNNNNNAGG 1 cut(s) 56
EcoT14I CCWWGG 1 cut(s) 217
ErhI CCWWGG 1 cut(s) 217
FaiI YATR 1 cut(s) 190
Fnu4HI GCNGC 1 cut(s) 32
FokI GGATG 1 cut(s) 164
Fsp4HI GCNGC 1 cut(s) 32
FspBI CTAG 1 cut(s) 14
GluI GCNGC 1 cut(s) 32
HapII CCGG 1 cut(s) 80
HincII GTYRAC 2 cut(s) 19, 94
HindII GTYRAC 2 cut(s) 19, 94
HpaII CCGG 1 cut(s) 80
HphI GGTGA 1 cut(s) 40
Hpy166II GTNNAC 2 cut(s) 19, 94
Hpy188III TCNNGA 1 cut(s) 125
Hpy8I GTNNAC 2 cut(s) 19, 94
HpyAV CCTTC 1 cut(s) 166
HpyCH4V TGCA 3 cut(s) 31, 107, 185
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
HpyF3I CTNAG 2 cut(s) 74, 156
LpnPI CCDG 1 cut(s) 93
Lsp1109I GCAGC 1 cut(s) 43
LweI GCATC 1 cut(s) 142
MaeI CTAG 1 cut(s) 14
MnlI CCTC 2 cut(s) 142, 169
MroXI GAANNNNTTC 1 cut(s) 132
MspI CCGG 1 cut(s) 80
MwoI GCNNNNNNNGC 1 cut(s) 137
PdmI GAANNNNTTC 1 cut(s) 132
PinAI ACCGGT 1 cut(s) 79
PkrI GCNGC 1 cut(s) 33
SatI GCNGC 1 cut(s) 32
SetI ASST 7 cut(s) 13, 63, 75, 91, 133, 142, 197
SfaNI GCATC 1 cut(s) 142
SgeI CNNG 8 cut(s) 26, 40, 65, 70, 92, 137, 149, 158
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
SspMI CTAG 1 cut(s) 14
StyI CCWWGG 1 cut(s) 217
TaqI TCGA 1 cut(s) 136
TseI GCWGC 1 cut(s) 31
XagI CCTNNNNNAGG 1 cut(s) 56
XmnI GAANNNNTTC 1 cut(s) 132
XspI CTAG 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.