Rh5CG559900

Phosphopantetheine attachment site

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0016811
Physical Location & Seq
Forward (+)
78385682 .. 78393832
8151 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG559900.1

Sequence Viewer

Length: 6888 bp
ATGGACCCTGGAAAATCAATAGAGGATCAGTTCTCCATGCTGCATCCATGCCTGCCTCTGAACACAAGAATTGGGATAGTAGGCGCTGGTCCAAGTGGTTTGTCAGCTGCTTATGCTCTAGTAAAGCTCGGTTACAGCAATGTGACTGTGTTAGAGAAGTACCATTCTGTTGGTGGCATGTGTGAATCAGTCGATATTGAAGGGAATATATATGATCTAGGTGGCCAAGTTCTTGCAGCAAACAGTGCCCCTGTCATTTTTCACTTGGCAAAGGAGACTGAATCTGAACTAGAAGAAATGGACTCCCACAAGCTTGCTCTTATTGACAATGCTACAGGAGAGTATGAAGATATAAAAGTTGCAGATGACTATGTATCTGTGATCTCACTGACCTTAGAACTCCAGGATAAAGTAAAGAACTCAGGCCGAATTGGGATCCATGCTCTGAGTGAATTTGCCTCAGACTCGACTCCATCCTATCTTGAACGTCAAGGATTTAGTTCTGTTCCCAAATCTGTGGCTTATGGATATACTGCTTCTGGCTATGGGTATGTTGAAGACATGCCTTATGCTTACATTCATGAGTTCACCCGAACTTCTATGGCTGGAAAAATCCGCCGTTTTAAAGGTGGATATACAAGTCTTTGGAAGAAGATCAGTAAATCACTCCCAATGGTTCACTGCAATACTGAAGTATTGACAGTCAAACGTTATTCTGATTATGTTAGTATCGATGTGAAAAAATGTGACGGAGAAGTCCAAAATATGGAGTTTGATAAGATCATTGTCTCTGGTTCATTTCCTTTGAACTATGGAAGAATTTACAGATCACCATCACATTCTGCAGAACATAAAACAGAAGTGATGGATATGGGTGATGTTGAAAAGGAGTTGTTCTGTAAAGTACAGACCATTGACTACTACACAACTGTTTTGAAGGTTAAAGGGATAGAGCATATGCCTATAGGCTTCTATTACTTCAGTGAATACACAAGTAATCCTGCAACAATTGGACATCCAGTTGCAATGCAGAGATTCTTTGCTGACACAGATATTTTCTTATTCTGGTCTTACGGAAATTCTGCCGACATTGTGGGACCAACTGTGACAGAACTTGCAATTGAAGCTGTTAAACGTATAGGGGGAGAAGTTAAGGAGGTGGTTCTCCAGCGCCGGTTTAAGTATTTCCCTCATGTTGATAGCCAAGCCATGATGAATGGATTTTATAACAAATTGGAGTCTGAACTTCAAGGCGTGAAGAACACTTATTACGTAGGCGGGCTTGTGGCTTTTGAGCTTACAGAGAGAAATTCATCATATGCTATGGCTTTAGTCTGCAAGCACTTTGCAAATGACAATCCTTTGCCAAAGCTCCCATATGTTAAGAGTTTGTTTTCTTTCCAAAATGAATTGGAAAGAAGCCCTACAATCTTGGCCGAACTACCAGGAGTGGAGTACCCTAATCTGTCTTCCCTTGATGGCTATCTGAAGCACTGGGGAACTCATAGAGTCACTCAAAACAAGACGCTCTATACTTGGATCAATGAAGAAGGGGCAGTTGCTTGCCAGAGGACTTACGCAGAACTTAATGCAAATGCTTCTTGCATTGCTCAAAAGATCTTGACATGCCAGAAACCAGTAATCAAGCCTGGCGACAGGGTCCTCCTGGTCCATGTCCCGGGTCTGGACTTCATAGATGCTTTCTTTGGATGCTTAAGAGCTAAAGTCTTGCCAGTCCCAGTTCTACCTCCAGATCCTTTGCAAAGAGGTGGTCAGGCACTTTTGAAGATTGAAAACATTGCTAAATCATGTAATGCAAAGGCAATTCTGTCCACCATTAGTTATCACTGGGCAGTGCAAGCAGGTTCAGTTAAAAATATGATCTCATTGACTGCTAAGAATCAAAAGTCCTCGGCAAGGTGGCCGAATCTTCCTTGGTTACATACAGATTCTTGGGTTAAGAACTCCAAGAGCGGAGTTGTGGAAGCTCTAAAGGATGAATCTGAATCACAGCCAGGTGATGTATGTTTTCTCCAATTCACATCAGGTTCTACTGGCGATGCTAAAGGAGTCATGATAACTCATGGAGGGCTCATTCATAATGTCAAGTTGATGAGAAAGAGATACAAGAGCACCTCAAAAACAGTTCTAGTAAGCTGGCTTCCTCAGTACCACGACATGGGGCTGATCGGAGGACTTTTCACAGCTCTTGTTAGTGGTGGGACTGCAGTTTTGTTTTCACCATTGACATTCATCAGGAATCCACTGTTATGGCTCCAAGTCATGAGCAAATATCAGGCTACTCACAGTGCTGGCCCCAACTTTGCCATTGAGCTAGTAGTTAGAAGGCTAGAGTCTGACAAGACTAGAAAATATGACCTGTCTTCCATGAAGTTCCTCATGGTTGCTGCTGAACCTGTTAGGCAGAAAACTCTGAAAAGATTTGTTGATCTGACTCGTCCTTTCGGCTTAACTCAAGAGGTGATGGCACCTGGCTATGGCTTGGCAGAAAACTGTGTGTTTGTCAGTTGTGCATATGGTGAAGGAAAGCCTATCATGGTAGATTGGCAAGGAAGAGTATGTTGTGGATATGTGAATCCAAATGATGAAGATGTCGACATCAGAATAGTTGATCCAGAGAGCGGTGAGGAGCTCAAAGAAGCTGGAAAAGAAGGAGAAATATGGATCAGTAGTCCCAGTGCTGGAGTTGGGTATTGGGAAAGAGAAGAGCTAAGCAAGAAAACTTTTAAAAACCAGCTTCCTGACAATCCGAGACGTATCTACACCAGGACTGGGGATTTGGGACGCATAATTGACAGCAAACTCTTCATCACTGGAAGAATCAAAGATCTTATCATTGTTGCAGGAAGGAACATTTACTCAGCAGATGTAGAGAAGACAGTGGAGAATGCATCTGAAGTTGTACGTCCGGGTTGTTGTGCAGTCATTTCTGTTCCAGTGGAAATCCTATCAAAAAAAGGAATCTCAGTTCAAGACAACTCTGACCAGGTTGGTTTAGTTGTCATTGCGGAGGTTAGGGATGGAAAACCTGTTGGAAAGGATGTGGTTGAACAAATTCAAGCTCGTGTTGCAGAAGAACATGGGGTCACTGTTGCTACTATCAAGTTGATCAGGCCGAAAACCATTAGTAAAACAACGTCAGGAAAAATCAAAAGATTTGAATGCCTGCAGCAGTTTACTGATGGAACATTGAATATTGTACCAGAACCACTTTTAACAAAGAGAAGGCTGATTCGGTCCTTCACTACAGGAACATGCAAGGAGGGAAAAACTCCTCGGCCACACCTTGTGAGAAGCACTCCTCCACCAAGCCCCAAAATAAGCAATAAACAGATTGTGGACTTCTTGAAACAATTAGTTTCCGAGCAGACTGGTATTTCAATCAACAAAATCACTGACACTGAAAGTCTAGTGTCTTATGGAATTGACTCCATTGGGGTGGTCAGAGCAGCTCAGAAACTTTCAGACTTCCTTGGTGTGCCAGTAGGAGCTGTGGACATTTTCACTGCAAACTGCATTGCAGACTTGGCAAGCTTCTCGGAGAATCTTTTAGTAAATGCTCAACCTCAACTGTCCACTCAGCCTCACCTTGTAAGAAGCTCTCCTCCACCAAGCCTCAAAATAGGCAATAAACAGATTGTGGACTTCTTGAAACGGCTAGTTTCCGAGCAGACTGGTATTTCAATCAACAAAATCTCTGACACTGAAAGTCTAGTGTCTTATGGAATTGACTCCATTGGGGTGGTCAGAGCAGCTCAGAAACTTTCAGACTTTCTTGGTGTGCCAGTAGGAGCTGTAGACATTTTCACTGCAACCTGCATTGCCGACTTGGCAAGCTTCTCGGAGAATCTTTTAGTAAATGCTCAACCTCAACTGTCCACTGATCCATCCTATGTTGCACAACCTGAGACTGAGACTGATTCTGCTGAGCTTTCGATGGAACTTCCCGAGTCCAATCACTCAATTATCTGGTTATTCCAACTTCTAGCTCTTGTTTACGTTGCGTTCATGCTCTCCCTTCCTGCATATTTATCAGTTTCTACTTTCACAAGTTGTGTCTCGGCCACTCATGCATTGGTAGAAGGTGTTCCCTATCTAGATTATTTGGCCTTGCTGACCTTTGCTCCCCTTGCTTGGATGTTCTGCATATTTTCTACCTGTGTTTCAATTGCATTCTTGGGGAACTCTTTCTTAAAACCAAACTATGCCCTGAACCCTGAAGTCTCCGTCTGGTCAACGGATTTTGTCAAGTGGTGGGCTCTTTACAAGGGTCATGAAGTTGCCTCCAAAGTTTTGGCAGAGCCTCTGCGAGGCACAGTGTTCCTTAAGTATTGGTTTGAGATGCTTGGAGCTAGGATTGGATCCTCAGTTTTACTTGATACAGTTGACATAACAGACCCCTCTCTAGTTTCAATTGGAGATGGAGCTGTGATTGCAGAAGGTGCTTTGATTCAAGGCCATGAAGTGAAGAATGGAGTGTTGAGCTTCCTCCCAATAAGAATTGGTCAAAACTCCTCAGTTGGCCCTTACGCTGTTGTCCAGAAGGGAACTATATTGGCAGAAGACAGTGAGCTGATGGCCTTACAAAAAGGTGGAGGCATGTCTGTTATCAAGGCTAAAAATCATCAGAATACAAAGTCAGGCCATCTCAGAACTTGGTTTTGCCACCGAATCACCATTGCTTGCCACCTTAGATTTGCTAAGCTTCTGTCAGGAACAGAAGCCTTCTGCATCTACTTACGCCTTCTGGGTGCAAAGGTTGGAAAACACTGTTCTATCAGGGCTATCAATCCAGTTTCAGACCCGAAATTGTTATCACTTGGTTCTGGTGTCCATCTTGGTGATTTCAGTCGGATTATTGCCGGGTTTTATTCCTCCAATGGGTTTGTTAGCGGGAAAATTGAGGTGCAAGATAATGCAGTAATTGGGAGCGAAAGCGTAGTCCTTCCTGGCTCAGTTATTCAGAAGGATGTTATTCTTGGTGCACTTTCAGTTGCACCAGTAAATTCAATGCTTCAGGCTGGTGGTGTTTACATTGGTTCTCAAACTCCAATCATGATCAAGAACACCATGCATTCTTTGGATGACCGAATAGAAGAGATGGACATGAAATATAAGAAAATAGTTGGTAACCTTTCTGCAAATTTGGCTGCCACAACTCTGAAGGTCAAATCAAGATACTTCCATAGAATTGGTGTTAGTGGGAAGGGATACTTAAAGATTTATGACAACATCAAAGGCTTGCCACACCATAACATTTTCTCTCCTGGCAAGAGCTATCCTGTTATAGTTCGGCACAGCAACAGCTTGAGTGCTGATGATGATGCAAGGATTGATGCACGCGGTGCAGCCATCCGAATACTTCAAGGTGAGACTAGTGACTCCTCACTCCTTGACCTGACACTGAAGACGGGAAAGGCATTTTATGCCCGCACAATTGCAGACTTTGCAACATGGTTAGTGTGTGGACTTCCTGCAAGGGAAGAGTATGTCAAGCGAGCCCCACATGTACGCGATGCAGTGTGGACTTCCCTTCGCCATGCAAACTCATTCACTGAGCTACATTACTACTCAAACATCTGCAGGCTGTTCCGGTTCACAGATGGACAGGAAATGTATGTCAAGTTCAAGTTGAGGCCTTCCAATGAGAACATTAGTGAAGAATCTGGTAAGGTAGAACCTATTGGCATTCTTCCACCTGATACAGGTGCAATTCCTAGAGATGAGAATGATACTCGCCCTCTACTTTTCCTTGCCAAAGATTTCCAAAGCCGGGTCAATGAAACTGGTGTTCGTTATATATTCCAGTTACAGGTCAGGCCTATTCCACAGGATGAAGCTACCCGAGACATTGCACTTGACTGCACCAAACCCTGGAATGAGGCTGAGTTCCCGTACATTGACGTTGGAGAGATTAACATCAACCACAATATATCTGCAGAAGAATCAGAACAGCTGAATTTCAATCCTTTTGTTAAATGCCAAGAAATAGATGTCATCAGGGCTTCATCATGCTCCCAGAGTGCTTCGATTGACCATGGTCGTTCACTGATCTATGAGATTTGCCAGCACTTACGCAATGGTGAACCCCTGCCAGAGGCTTGGAAAATCTTTGTAGAGCAGTCTGATGTCAAAGTAGACCTTTCTGGTTGTCCAATGGCAGCAGCATTGCAGAAAAATGATTCACATAGCGTGACACTGGAAAGAACTGTCTTTCAGACTCTATGGGCAACTTTTGCGCAACCTTTTCTGCAAACAGTGTTCCCTCATTTCCTCCTCGCGTTAGTGATCTTCTATCCTTTGAGCTTGGCTCTTCACTTGAAGAATGTGCAGAAACTCCGTCTGCATTGGTTGTTCCCCTTGTTTTGGGTTTGTTCAGGATCTTTGGCTGGGTTAGCTTGTGTTGTTGCAAAATGGGTACTAGTGGGAAAGAAGAAAGAAGGTGAAGCCATACACATGTGGAGCCTAGGGGTTTTTTTGGACACTACATGGCAAGCCTTTAGAACCCTAGTTGGGAGCTACTTCATGGAAATGACAAGCGGGTCAGTTCTCTTTGTGTTGTGGATGAGGCTGATGGGTTCAGAGATTGAGTTGGACCAAGGTGCTTATGTGGACAGCATGGGAGCTTTGCTCAACCCTGAAATGGTGGAGATTGAGAGAGGTGGGTGTGTGGGAAGAGAAGCTATCTTGTTTGGTCACATTTATGAAGGGGATGGGGGCAAGGTTAAGTTCGGAAAGATTACAATTGAAGAAGGTGGATTTGTAGGGAGTAGAGCAATAGCAATGCCAGGAGTGATAGTGGAGAGTGGAGGCAGTCTTAGTGCTCTGTCTCTTGCCATGAAAGAAGAAATTATCAAGTCAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AMP-binding Amino_oxidase Catalase Hexapep NAD_binding_8 PP-binding

Protein Analysis

2295

Amino Acids

253.03

Weight (kDa)

6.64

Isoelectric Point (pI)

38.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAD_binding_8 PF13450 26 - 92 5.6e-13 NAD(P)-binding Rossmann-like domain
Amino_oxidase PF01593 32 - 280 2.7e-15 Flavin containing amine oxidoreductase
AMP-binding PF00501 522 - 906 7e-60 AMP-binding enzyme
AMP-dom_DIP2-like PF23024 950 - 1073 9.8e-07 Disco-interacting protein 2-like, AMP domain
PP-binding PF00550 1122 - 1185 8.4e-11 Phosphopantetheine attachment site
PP-binding PF00550 1223 - 1286 1.9e-10 Phosphopantetheine attachment site
Catalase PF00199 1729 - 2000 2.4e-07 Catalase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016811)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43570
malus_domestica MD03G1020900.v1.1 MD11G1022500.v1.1
prunus_persica Prupe.6G018300_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0078141
rosa_laevigata RLG00000036756
rosa_multiflora Rmu_sc0019972.1_g000001
rosa_roxburghii Rroxscaffold_1G00004000
rosa_rugosa Rorug05G0458900
rosa_samantha Rh5AG513500 Rh5BG536500 Rh5CG559900 Rh5DG548000
rosa_wichuraiana Rw5G047620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1227
AasI GACNNNNNNGTC 2 cut(s) 755, 6562
Acc16I TGCGCA 1 cut(s) 6261
Acc36I ACCTGC 2 cut(s) 1853, 3845
AccB1I GGYRCC 1 cut(s) 2488
AccB7I CCANNNNNTGG 3 cut(s) 766, 2179, 5895
AccBSI CCGCTC 2 cut(s) 1974, 2643
AccI GTMKAC 3 cut(s) 2616, 3819, 6159
AccII CGCG 3 cut(s) 5364, 5535, 6302
AciI CCGC 9 cut(s) 616, 1278, 1974, 2643, 3029, 4914, 5364, 5452, 6561
AclI AACGTT 1 cut(s) 709
AcoI YGGCCR 5 cut(s) 223, 1434, 1922, 3299, 4083
AcsI RAATTY 8 cut(s) 452, 819, 1078, 1309, 3075, 5026, 5164, 5980
AcuI CTGAAG 8 cut(s) 711, 964, 1508, 2937, 4260, 5021, 5204, 5447
AdeI CACNNNGTG 2 cut(s) 3310, 5366
AfaI GTAC 9 cut(s) 161, 906, 1457, 2171, 2925, 3222, 5532, 5918, 6441
AflII CTTAAG 2 cut(s) 1714, 4346
AflIII ACRYGT 2 cut(s) 5527, 6477
AhlI ACTAGT 2 cut(s) 5396, 6442
AloI GAACNNNNNNTCC 2 cut(s) 2973, 3005
Alw21I GWGCWC 4 cut(s) 2135, 2655, 5008, 6847
Alw44I GTGCAC 1 cut(s) 5004
Ama87I CYCGRG 3 cut(s) 1678, 3968, 5865
ApaLI GTGCAC 1 cut(s) 5004
ApoI RAATTY 8 cut(s) 452, 819, 1078, 1309, 3075, 5026, 5164, 5980
ArsI GACNNNNNNTTYG 8 cut(s) 1756, 1788, 2215, 2247, 2782, 2814, 4947, 4979
Asp700I GAANNNNTTC 3 cut(s) 3075, 4107, 4208
AspA2I CCTAGG 1 cut(s) 6487
AspLEI GCGC 3 cut(s) 86, 1173, 6262
AspS9I GGNCC 9 cut(s) 4, 89, 1097, 1660, 1669, 2315, 3258, 4544, 6616
AsuC2I CCSGG 5 cut(s) 1679, 1680, 2931, 4885, 5795
AvaI CYCGRG 3 cut(s) 1678, 3968, 5865
AvaII GGWCC 7 cut(s) 4, 89, 1097, 1660, 1669, 3258, 6616
AvrII CCTAGG 1 cut(s) 6487
BaeGI GKGCMC 2 cut(s) 250, 5008
BalI TGGCCA 1 cut(s) 225
BamHI GGATCC 2 cut(s) 435, 4382
BanI GGYRCC 1 cut(s) 2488
BanII GRGCYC 4 cut(s) 2094, 2655, 4282, 5524
BarI GAAGNNNNNNTAC 2 cut(s) 2145, 2177
BauI CACGAG 1 cut(s) 3084
BbsI GAAGAC 6 cut(s) 564, 1461, 2376, 2903, 4590, 5435
Bbv12I GWGCWC 4 cut(s) 2135, 2655, 5008, 6847
BceAI ACGGC 2 cut(s) 603, 3692
BcgI CGANNNNNNTGC 4 cut(s) 3540, 3574, 3843, 3877
BciVI GTATCC 1 cut(s) 5225
BclI TGATCA 2 cut(s) 3129, 5079
BcnI CCSGG 5 cut(s) 1679, 1680, 2931, 4885, 5795
BcuI ACTAGT 2 cut(s) 5396, 6442
BfmI CTRYAG 9 cut(s) 333, 843, 963, 2226, 3188, 3267, 3816, 5602, 5958
BfoI RGCGCY 2 cut(s) 87, 1174
BfrI CTTAAG 2 cut(s) 1714, 4346
BfuAI ACCTGC 2 cut(s) 1853, 3845
BfuI GTATCC 1 cut(s) 5225
BglI GCCNNNNNGGC 1 cut(s) 3851
BglII AGATCT 2 cut(s) 1617, 2848
BlnI CCTAGG 1 cut(s) 6487
BlpI GCTNAGC 3 cut(s) 2732, 3948, 4722
Bme18I GGWCC 7 cut(s) 4, 89, 1097, 1660, 1669, 3258, 6616
BmeT110I CYCGRG 3 cut(s) 1678, 3968, 5865
BmgT120I GGNCC 9 cut(s) 4, 89, 1097, 1660, 1669, 2315, 3258, 4544, 6616
BmiI GGNNCC 9 cut(s) 6, 437, 1098, 1661, 2276, 2317, 2490, 4384, 6485
BmrI ACTGGG 5 cut(s) 1504, 1733, 1858, 2691, 2802
BmuI ACTGGG 5 cut(s) 1504, 1733, 1858, 2691, 2802
BoxI GACNNNNGTC 1 cut(s) 6060
BpiI GAAGAC 6 cut(s) 564, 1461, 2376, 2903, 4590, 5435
BplI GAGNNNNNCTC 6 cut(s) 3304, 3336, 6316, 6348, 6636, 6668
BpmI CTGGAG 4 cut(s) 386, 1151, 1734, 2724
Bpu1102I GCTNAGC 3 cut(s) 2732, 3948, 4722
BpuEI CTTGAG 2 cut(s) 2460, 5350
BpuMI CCSGG 5 cut(s) 1679, 1680, 2931, 4885, 5795
Bsa29I ATCGAT 1 cut(s) 732
BsaAI YACGTR 1 cut(s) 1273
BsaBI GATNNNNATC 3 cut(s) 832, 1482, 5939
BsaWI WCCGGW 1 cut(s) 5613
BsaXI ACNNNNNCTCC 4 cut(s) 4129, 4159, 6804, 6834
Bse118I RCCGGY 1 cut(s) 1173
Bse8I GATNNNNATC 3 cut(s) 832, 1482, 5939
BseCI ATCGAT 1 cut(s) 732
BseJI GATNNNNATC 3 cut(s) 832, 1482, 5939
BseRI GAGGAG 7 cut(s) 2663, 3285, 3312, 3615, 4525, 5395, 6287
BseSI GKGCMC 2 cut(s) 250, 5008
BseYI CCCAGC 1 cut(s) 6410
BsgI GTGCAG 4 cut(s) 2961, 5388, 5869, 6371
Bsh1236I CGCG 3 cut(s) 5364, 5535, 6302
BshNI GGYRCC 1 cut(s) 2488
BshVI ATCGAT 1 cut(s) 732
BsiHKAI GWGCWC 4 cut(s) 2135, 2655, 5008, 6847
BsiHKCI CYCGRG 3 cut(s) 1678, 3968, 5865
BsiSI CCGG 6 cut(s) 1174, 1679, 2930, 4884, 5614, 5794
BslFI GGGAC 6 cut(s) 1110, 1661, 1721, 2236, 2679, 2817
BsmBI CGTCTC 1 cut(s) 2767
BsmFI GGGAC 6 cut(s) 1110, 1661, 1721, 2236, 2679, 2817
BsmI GAATGC 5 cut(s) 2914, 3188, 4193, 5095, 5709
BsoBI CYCGRG 3 cut(s) 1678, 3968, 5865
Bsp1286I GDGCHC 8 cut(s) 250, 2094, 2135, 2655, 4282, 5008, 5524, 6847
Bsp1720I GCTNAGC 3 cut(s) 2732, 3948, 4722
Bsp19I CCATGG 1 cut(s) 6058
BspACI CCGC 9 cut(s) 616, 1278, 1974, 2643, 3029, 4914, 5364, 5452, 6561
BspDI ATCGAT 1 cut(s) 732
BspFNI CGCG 3 cut(s) 5364, 5535, 6302
BspHI TCATGA 5 cut(s) 580, 2073, 2283, 4294, 5076
BspLI GGNNCC 9 cut(s) 6, 437, 1098, 1661, 2276, 2317, 2490, 4384, 6485
BspMAI CTGCAG 5 cut(s) 847, 2230, 3192, 5606, 5962
BspMI ACCTGC 2 cut(s) 1853, 3845
BspQI GCTCTTC 2 cut(s) 2721, 6339
BspT107I GGYRCC 1 cut(s) 2488
BspTI CTTAAG 2 cut(s) 1714, 4346
BsrBI CCGCTC 2 cut(s) 1974, 2643
BsrFI RCCGGY 1 cut(s) 1173
BssAI RCCGGY 1 cut(s) 1173
BssSI CACGAG 1 cut(s) 3084
BssT1I CCWWGG 5 cut(s) 1934, 3493, 6058, 6487, 6619
Bst2BI CACGAG 1 cut(s) 3084
Bst6I CTCTTC 7 cut(s) 2569, 2721, 2831, 5112, 5499, 6339, 6691
BstAFI CTTAAG 2 cut(s) 1714, 4346
BstAPI GCANNNNNTGC 6 cut(s) 245, 4463, 5366, 5447, 5468, 6257
BstBAI YACGTR 1 cut(s) 1273
BstDSI CCRYGG 1 cut(s) 6058
BstEII GGTNACC 1 cut(s) 5150
BstENI CCTNNNNNAGG 4 cut(s) 1915, 4329, 5724, 6116
BstFNI CGCG 3 cut(s) 5364, 5535, 6302
BstH2I RGCGCY 2 cut(s) 87, 1174
BstHHI GCGC 3 cut(s) 86, 1173, 6262
BstNSI RCATGY 7 cut(s) 181, 565, 1629, 3279, 4624, 5531, 6481
BstPAI GACNNNNGTC 1 cut(s) 6060
BstPI GGTNACC 1 cut(s) 5150
BstSFI CTRYAG 9 cut(s) 333, 843, 963, 2226, 3188, 3267, 3816, 5602, 5958
BstSLI GKGCMC 2 cut(s) 250, 5008
BstSNI TACGTA 1 cut(s) 1273
BstUI CGCG 3 cut(s) 5364, 5535, 6302
BstV2I GAAGAC 6 cut(s) 564, 1461, 2376, 2903, 4590, 5435
BstX2I RGATCY 6 cut(s) 435, 1617, 1753, 2848, 4382, 6401
BstXI CCANNNNNNTGG 8 cut(s) 170, 517, 2271, 3460, 3763, 4315, 5213, 6123
BstYI RGATCY 6 cut(s) 435, 1617, 1753, 2848, 4382, 6401
Bsu15I ATCGAT 1 cut(s) 732
BsuI GTATCC 1 cut(s) 5225
BsuTUI ATCGAT 1 cut(s) 732
BtgI CCRYGG 1 cut(s) 6058
BtgZI GCGATG 2 cut(s) 2073, 5550
BtsI GCAGTG 5 cut(s) 679, 1860, 3525, 3828, 5547
BveI ACCTGC 2 cut(s) 1853, 3845
CciI TCATGA 5 cut(s) 580, 2073, 2283, 4294, 5076
CfoI GCGC 3 cut(s) 86, 1173, 6262
Cfr10I RCCGGY 1 cut(s) 1173
Cfr13I GGNCC 9 cut(s) 4, 89, 1097, 1660, 1669, 2315, 3258, 4544, 6616
Cfr9I CCCGGG 1 cut(s) 1678
ClaI ATCGAT 1 cut(s) 732
CseI GACGC 2 cut(s) 1534, 2814
CsiI ACCWGGT 1 cut(s) 3006
Csp6I GTAC 9 cut(s) 160, 905, 1456, 2170, 2924, 3221, 5531, 5917, 6440
CviQI GTAC 9 cut(s) 160, 905, 1456, 2170, 2924, 3221, 5531, 5917, 6440
DraI TTTAAA 2 cut(s) 625, 2749
DraIII CACNNNGTG 2 cut(s) 3310, 5366
DrdI GACNNNNNNGTC 2 cut(s) 755, 6562
DseDI GACNNNNNNGTC 2 cut(s) 755, 6562
EaeI YGGCCR 5 cut(s) 223, 1434, 1922, 3299, 4083
Eam1104I CTCTTC 7 cut(s) 2569, 2721, 2831, 5112, 5499, 6339, 6691
EarI CTCTTC 7 cut(s) 2569, 2721, 2831, 5112, 5499, 6339, 6691
EciI GGCGGA 1 cut(s) 605
Ecl136II GAGCTC 1 cut(s) 2653
Eco105I TACGTA 1 cut(s) 1273
Eco130I CCWWGG 5 cut(s) 1934, 3493, 6058, 6487, 6619
Eco147I AGGCCT 2 cut(s) 5659, 5842
Eco24I GRGCYC 4 cut(s) 2094, 2655, 4282, 5524
Eco47I GGWCC 7 cut(s) 4, 89, 1097, 1660, 1669, 3258, 6616
Eco53kI GAGCTC 1 cut(s) 2653
Eco57I CTGAAG 8 cut(s) 711, 964, 1508, 2937, 4260, 5021, 5204, 5447
Eco88I CYCGRG 3 cut(s) 1678, 3968, 5865
Eco91I GGTNACC 1 cut(s) 5150
EcoICRI GAGCTC 1 cut(s) 2653
EcoNI CCTNNNNNAGG 4 cut(s) 1915, 4329, 5724, 6116
EcoO109I RGGNCCY 1 cut(s) 1660
EcoO65I GGTNACC 1 cut(s) 5150
EcoT14I CCWWGG 5 cut(s) 1934, 3493, 6058, 6487, 6619
EcoT22I ATGCAT 3 cut(s) 2914, 4096, 5097
EcoT38I GRGCYC 4 cut(s) 2094, 2655, 4282, 5524
ErhI CCWWGG 5 cut(s) 1934, 3493, 6058, 6487, 6619
Esp3I CGTCTC 1 cut(s) 2767
FalI AAGNNNNNCTT 4 cut(s) 5219, 5251, 6147, 6179
FaqI GGGAC 6 cut(s) 1110, 1661, 1721, 2236, 2679, 2817
FauI CCCGC 4 cut(s) 1271, 4907, 5459, 6554
FauNDI CATATG 4 cut(s) 957, 1318, 1378, 2536
FbaI TGATCA 2 cut(s) 3129, 5079
FblI GTMKAC 3 cut(s) 2616, 3819, 6159
FriOI GRGCYC 4 cut(s) 2094, 2655, 4282, 5524
FspI TGCGCA 1 cut(s) 6261
GlaI GCGC 3 cut(s) 85, 1172, 6261
GsaI CCCAGC 1 cut(s) 6414
GsuI CTGGAG 4 cut(s) 386, 1151, 1734, 2724
HaeII RGCGCY 2 cut(s) 87, 1174
HapII CCGG 6 cut(s) 1174, 1679, 2930, 4884, 5614, 5794
HgaI GACGC 2 cut(s) 1534, 2814
HhaI GCGC 3 cut(s) 86, 1173, 6262
Hin6I GCGC 3 cut(s) 84, 1171, 6260
HinP1I GCGC 3 cut(s) 84, 1171, 6260
HincII GTYRAC 3 cut(s) 2617, 4257, 4408
HindII GTYRAC 3 cut(s) 2617, 4257, 4408
HindIII AAGCTT 4 cut(s) 311, 3553, 3856, 4724
HpaII CCGG 6 cut(s) 1174, 1679, 2930, 4884, 5614, 5794
HpyCH4IV ACGT 9 cut(s) 487, 709, 1135, 1272, 2776, 2926, 3158, 4020, 5925
HpySE526I ACGT 9 cut(s) 487, 709, 1135, 1272, 2776, 2926, 3158, 4020, 5925
HspAI GCGC 3 cut(s) 84, 1171, 6260
Ksp22I TGATCA 2 cut(s) 3129, 5079
LguI GCTCTTC 2 cut(s) 2721, 6339
MabI ACCWGGT 1 cut(s) 3006
MaeII ACGT 9 cut(s) 487, 709, 1135, 1272, 2776, 2926, 3158, 4020, 5925
MbiI CCGCTC 2 cut(s) 1974, 2643
MfeI CAATTG 6 cut(s) 1008, 1119, 4188, 4434, 5457, 6765
MflI RGATCY 6 cut(s) 435, 1617, 1753, 2848, 4382, 6401
MhlI GDGCHC 8 cut(s) 250, 2094, 2135, 2655, 4282, 5008, 5524, 6847
MlsI TGGCCA 1 cut(s) 225
MluNI TGGCCA 1 cut(s) 225
MmeI TCCRAC 6 cut(s) 3034, 4024, 4762, 4853, 5908, 6594
Mox20I TGGCCA 1 cut(s) 225
Mph1103I ATGCAT 3 cut(s) 2914, 4096, 5097
MroXI GAANNNNTTC 3 cut(s) 3075, 4107, 4208
MscI TGGCCA 1 cut(s) 225
MslI CAYNNNNRTG 7 cut(s) 2269, 3458, 3761, 4860, 6476, 6551, 6723
Msp20I TGGCCA 1 cut(s) 225
MspA1I CMGCKG 2 cut(s) 107, 5977
MspCI CTTAAG 2 cut(s) 1714, 4346
MspI CCGG 6 cut(s) 1174, 1679, 2930, 4884, 5614, 5794
MunI CAATTG 6 cut(s) 1008, 1119, 4188, 4434, 5457, 6765
Mva1269I GAATGC 5 cut(s) 2914, 3188, 4193, 5095, 5709
MvnI CGCG 3 cut(s) 5364, 5535, 6302
NciI CCSGG 5 cut(s) 1679, 1680, 2931, 4885, 5795
NcoI CCATGG 1 cut(s) 6058
NdeI CATATG 4 cut(s) 957, 1318, 1378, 2536
NlaIV GGNNCC 9 cut(s) 6, 437, 1098, 1661, 2276, 2317, 2490, 4384, 6485
NmeAIII GCCGAG 3 cut(s) 1892, 3277, 4061
NmuCI GTSAC 8 cut(s) 142, 746, 1105, 1510, 3106, 5399, 6214, 6716
NsbI TGCGCA 1 cut(s) 6261
NsiI ATGCAT 3 cut(s) 2914, 4096, 5097
NspI RCATGY 7 cut(s) 181, 565, 1629, 3279, 4624, 5531, 6481
PagI TCATGA 5 cut(s) 580, 2073, 2283, 4294, 5076
PceI AGGCCT 2 cut(s) 5659, 5842
PciI ACATGT 2 cut(s) 5527, 6477
PciSI GCTCTTC 2 cut(s) 2721, 6339
PctI GAATGC 5 cut(s) 2914, 3188, 4193, 5095, 5709
PdmI GAANNNNTTC 3 cut(s) 3075, 4107, 4208
PflFI GACNNNGTC 1 cut(s) 1658
PflMI CCANNNNNTGG 3 cut(s) 766, 2179, 5895
PfoI TCCNGGA 1 cut(s) 402
Ppu21I YACGTR 1 cut(s) 1273
PpuMI RGGWCCY 1 cut(s) 1660
PscI ACATGT 2 cut(s) 5527, 6477
PshAI GACNNNNGTC 1 cut(s) 6060
PsiI TTATAA 1 cut(s) 1227
Psp124BI GAGCTC 1 cut(s) 2655
Psp1406I AACGTT 1 cut(s) 709
Psp5II RGGWCCY 1 cut(s) 1660
PspEI GGTNACC 1 cut(s) 5150
PspFI CCCAGC 1 cut(s) 6410
PspN4I GGNNCC 9 cut(s) 6, 437, 1098, 1661, 2276, 2317, 2490, 4384, 6485
PspPI GGNCC 9 cut(s) 4, 89, 1097, 1660, 1669, 2315, 3258, 4544, 6616
PspPPI RGGWCCY 1 cut(s) 1660
PsrI GAACNNNNNNTAC 6 cut(s) 1253, 1285, 4092, 4124, 5630, 5662
PstI CTGCAG 5 cut(s) 847, 2230, 3192, 5606, 5962
PsuI RGATCY 6 cut(s) 435, 1617, 1753, 2848, 4382, 6401
PsyI GACNNNGTC 1 cut(s) 1658
PvuII CAGCTG 2 cut(s) 107, 5977
RsaI GTAC 9 cut(s) 161, 906, 1457, 2171, 2925, 3222, 5532, 5918, 6441
RsaNI GTAC 9 cut(s) 160, 905, 1456, 2170, 2924, 3221, 5531, 5917, 6440
RseI CAYNNNNRTG 7 cut(s) 2269, 3458, 3761, 4860, 6476, 6551, 6723
SacI GAGCTC 1 cut(s) 2655
SalI GTCGAC 1 cut(s) 2615
SapI GCTCTTC 2 cut(s) 2721, 6339
Sau96I GGNCC 9 cut(s) 4, 89, 1097, 1660, 1669, 2315, 3258, 4544, 6616
SduI GDGCHC 8 cut(s) 250, 2094, 2135, 2655, 4282, 5008, 5524, 6847
SexAI ACCWGGT 1 cut(s) 3006
SfcI CTRYAG 9 cut(s) 333, 843, 963, 2226, 3188, 3267, 3816, 5602, 5958
SinI GGWCC 7 cut(s) 4, 89, 1097, 1660, 1669, 3258, 6616
SmaI CCCGGG 1 cut(s) 1680
SmiMI CAYNNNNRTG 7 cut(s) 2269, 3458, 3761, 4860, 6476, 6551, 6723
SmlI CTYRAG 4 cut(s) 1714, 2475, 4346, 5329
SmoI CTYRAG 4 cut(s) 1714, 2475, 4346, 5329
SnaBI TACGTA 1 cut(s) 1273
SpeI ACTAGT 2 cut(s) 5396, 6442
SseBI AGGCCT 2 cut(s) 5659, 5842
SsiI CCGC 9 cut(s) 616, 1278, 1974, 2643, 3029, 4914, 5364, 5452, 6561
SspI AATATT 1 cut(s) 3217
SstI GAGCTC 1 cut(s) 2655
StuI AGGCCT 2 cut(s) 5659, 5842
StyI CCWWGG 5 cut(s) 1934, 3493, 6058, 6487, 6619
TaiI ACGT 9 cut(s) 490, 712, 1138, 1275, 2779, 2929, 3161, 4023, 5928
TaqI TCGA 6 cut(s) 192, 467, 732, 2616, 3956, 6050
TaqII GACCGA 2 cut(s) 3246, 5124
TatI WGTACW 1 cut(s) 904
TseFI GTSAC 8 cut(s) 142, 746, 1105, 1510, 3106, 5399, 6214, 6716
Tsp45I GTSAC 8 cut(s) 142, 746, 1105, 1510, 3106, 5399, 6214, 6716
TspGWI ACGGA 5 cut(s) 765, 1089, 4237, 4274, 6350
TspMI CCCGGG 1 cut(s) 1678
Tth111I GACNNNGTC 1 cut(s) 1658
Van91I CCANNNNNTGG 3 cut(s) 766, 2179, 5895
Vha464I CTTAAG 2 cut(s) 1714, 4346
VneI GTGCAC 1 cut(s) 5004
VpaK11BI GGWCC 7 cut(s) 4, 89, 1097, 1660, 1669, 3258, 6616
XagI CCTNNNNNAGG 4 cut(s) 1915, 4329, 5724, 6116
XapI RAATTY 8 cut(s) 452, 819, 1078, 1309, 3075, 5026, 5164, 5980
XbaI TCTAGA 1 cut(s) 4117
XceI RCATGY 7 cut(s) 181, 565, 1629, 3279, 4624, 5531, 6481
XcmI CCANNNNNNNNNTGG 3 cut(s) 170, 4093, 5098
XmaI CCCGGG 1 cut(s) 1678
XmaJI CCTAGG 1 cut(s) 6487
XmiI GTMKAC 3 cut(s) 2616, 3819, 6159
XmnI GAANNNNTTC 3 cut(s) 3075, 4107, 4208
Zsp2I ATGCAT 3 cut(s) 2914, 4096, 5097
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.