Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008737

Physical Location & Seq

Genomic Coordinates Forward (+)

63226458 .. 63228730

Gene Structure 2273 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0459100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGCGTTGATCACCCAAAGAACCTCAACATCTTCTCCATCAGCTGAATCAGCTCGTCCATGGAAGCACGATGTGTTCTTGAGTTTCAGGGGTGAAGACACCCGGAAGCAGGGGCGGATTCAGGGGGTGGCGAGCGTTGAGGAAGAAGATTCTTTTCCTGGAAAAGAGATCCTCGAAACGATGCCGTTTAGAAATAGTTTCATTAAACAAAACAAGGTCGTTTTGGACTATCACTTCTGCAAATTTTCAGCCAATTTGGTGATCGTTAAGGCATCAAAAACTGCAATTTACCATTATAAATACGAACGGTTCCGGTTCGACAGATTCGGTCCGTTCGTATCCTATCCAGAGCGGAGCTCCACTTTGAAATTAACGTGTGAAGTTCGAGTTTTGGGTCACTTTTCGGTCGCACATTCACATCTCGACCGTTCAGTTTTTAGTATTCTTTTGATATTGAATGACCGTTCAATTTTAGTCTTGCCTATCCTGCTAAAAGTTTCTGAATCCGCCACTGCCCGGAAGGGTTTCATATCCCATTTATACCACGAACTGCAATACTGGCAAGCAATTAAGACTTTCAAGGACGACCGAGATCTTGATATAGGAGCAAGTATCTCTCCAGAGCTCGGCAACGCAATCAAAGAATCACATATTGCCATCGTTGTTTTCTCACCAAACTATGCCTTTTCCACCTGGTGCTTGGATGAACTTGCAAAAATTTTGGAATCCATGGAAACAAGGGGTAAAACAGTTTTGCCGGTTTTCTTTGATGTGGATCCGTCCGATGTACGGAATCAAGGGAGGAGCTTTGCTGAAGCCTTCGCTAAGCACGAAGAAAAGTTCAGTGATGATATAAAGAAGGTGGAGAGGTGGAGAGCAGCCTTGAGAAGTGTGGCTAATTTCTCTGGCTGGAATTCAAAGAATTATGTGTCACGCCCCGAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0042762 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

EIN3

Protein Analysis

315

Amino Acids

36.15

Weight (kDa)

8.96

Isoelectric Point (pI)

47.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	170 - 314	1.2e-43	TIR domain
TIR_2	PF13676	172 - 274	3e-13	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73730 AT1G73730
fragaria_vesca	FvH4_3g43580 FvH4_3g43580
malus_domestica	MD03G1020800.v1.1 MD11G1022400.v1.1
prunus_persica	Prupe.6G018200_v2.0.a1 Prupe.6G018200_v2.0.a1
pyrus_communis	pycom03g01780 pycom11g01800
rosa_chinensis	RchiOBHm_Chr5g0078151
rosa_laevigata	RLG00000036758
rosa_multiflora	Rmu_sc0018349.1_g000004 Rmu_sc0018349.1_g000007
rosa_roxburghii	Rroxscaffold_1G00003980
rosa_rugosa	Rorug05G0459100 Rorug05G0459200 Rorug05G0459300
rosa_samantha	Rh5AG513600 Rh5BG536600 Rh5CG560000 Rh5DG548200
rosa_wichuraiana	Rw5G047660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	297
AccBSI	CCGCTC	1 cut(s)	352
AciI	CCGC	3 cut(s)	115, 352, 507
AclWI	GGATC	3 cut(s)	163, 770, 783
AcsI	RAATTY	4 cut(s)	242, 717, 913, 941
AcuI	CTGAAG	1 cut(s)	834
AdeI	CACNNNGTG	2 cut(s)	73, 696
AfaI	GTAC	1 cut(s)	789
AfiI	CCNNNNNNNGG	4 cut(s)	109, 516, 626, 789
AflIII	ACRYGT	1 cut(s)	374
AgsI	TTSAA	5 cut(s)	367, 457, 468, 580, 918
AjnI	CCWGG	2 cut(s)	157, 692
AluBI	AGCT	5 cut(s)	44, 53, 357, 625, 807
AluI	AGCT	5 cut(s)	44, 53, 357, 625, 807
Alw21I	GWGCWC	2 cut(s)	359, 627
AlwI	GGATC	3 cut(s)	163, 770, 783
ApeKI	GCWGC	1 cut(s)	878
ApoI	RAATTY	4 cut(s)	242, 717, 913, 941
Asp700I	GAANNNNTTC	1 cut(s)	524
AspS9I	GGNCC	1 cut(s)	329
AsuC2I	CCSGG	2 cut(s)	103, 517
AsuHPI	GGTGA	4 cut(s)	4, 104, 271, 663
AvaII	GGWCC	1 cut(s)	329
BamHI	GGATCC	1 cut(s)	775
BanII	GRGCYC	2 cut(s)	359, 627
BbsI	GAAGAC	1 cut(s)	102
Bbv12I	GWGCWC	2 cut(s)	359, 627
BbvI	GCAGC	1 cut(s)	890
BccI	CCATC	2 cut(s)	46, 665
BceAI	ACGGC	1 cut(s)	169
BciT130I	CCWGG	2 cut(s)	159, 694
BciVI	GTATCC	1 cut(s)	349
BclI	TGATCA	1 cut(s)	9
BcnI	CCSGG	2 cut(s)	103, 517
BfuI	GTATCC	1 cut(s)	349
BglII	AGATCT	1 cut(s)	592
BisI	GCNGC	1 cut(s)	879
BlpI	GCTNAGC	1 cut(s)	825
BlsI	GCNGC	1 cut(s)	880
Bme1390I	CCNGG	4 cut(s)	103, 159, 517, 694
Bme18I	GGWCC	1 cut(s)	329
BmgT120I	GGNCC	1 cut(s)	329
BmiI	GGNNCC	2 cut(s)	311, 777
BmrFI	CCNGG	4 cut(s)	103, 159, 517, 694
BmsI	GCATC	2 cut(s)	171, 281
BpiI	GAAGAC	1 cut(s)	102
BplI	GAGNNNNNCTC	2 cut(s)	341, 373
BpmI	CTGGAG	1 cut(s)	603
Bpu1102I	GCTNAGC	1 cut(s)	825
BpuEI	CTTGAG	2 cut(s)	100, 904
BpuMI	CCSGG	2 cut(s)	103, 517
BsaBI	GATNNNNATC	1 cut(s)	774
BsaJI	CCNNGG	2 cut(s)	59, 729
BsaWI	WCCGGW	1 cut(s)	312
BsaXI	ACNNNNNCTCC	2 cut(s)	19, 49
Bsc4I	CCNNNNNNNGG	4 cut(s)	109, 516, 626, 789
Bse118I	RCCGGY	1 cut(s)	757
Bse1I	ACTGG	1 cut(s)	563
Bse8I	GATNNNNATC	1 cut(s)	774
BseBI	CCWGG	2 cut(s)	159, 694
BseDI	CCNNGG	2 cut(s)	59, 729
BseGI	GGATG	1 cut(s)	709
BseJI	GATNNNNATC	1 cut(s)	774
BseLI	CCNNNNNNNGG	4 cut(s)	109, 516, 626, 789
BseNI	ACTGG	1 cut(s)	563
BseRI	GAGGAG	1 cut(s)	817
BseXI	GCAGC	1 cut(s)	890
Bsh1285I	CGRYCG	3 cut(s)	408, 427, 589
BsiEI	CGRYCG	3 cut(s)	408, 427, 589
BsiHKAI	GWGCWC	2 cut(s)	359, 627
BsiSI	CCGG	4 cut(s)	103, 313, 517, 758
BslI	CCNNNNNNNGG	4 cut(s)	109, 516, 626, 789
Bsp1286I	GDGCHC	2 cut(s)	359, 627
Bsp143I	GATC	5 cut(s)	9, 168, 261, 592, 775
Bsp1720I	GCTNAGC	1 cut(s)	825
Bsp19I	CCATGG	2 cut(s)	59, 729
BspACI	CCGC	3 cut(s)	115, 352, 507
BspLI	GGNNCC	2 cut(s)	311, 777
BspPI	GGATC	3 cut(s)	163, 770, 783
BsrBI	CCGCTC	1 cut(s)	352
BsrFI	RCCGGY	1 cut(s)	757
BsrI	ACTGG	1 cut(s)	563
BssAI	RCCGGY	1 cut(s)	757
BssECI	CCNNGG	2 cut(s)	59, 729
BssMI	GATC	5 cut(s)	9, 168, 261, 592, 775
BssT1I	CCWWGG	2 cut(s)	59, 729
Bst2UI	CCWGG	2 cut(s)	159, 694
Bst4CI	ACNGT	4 cut(s)	309, 428, 464, 751
BstC8I	GCNNGC	2 cut(s)	133, 564
BstDEI	CTNAG	1 cut(s)	825
BstDSI	CCRYGG	2 cut(s)	59, 729
BstF5I	GGATG	1 cut(s)	709
BstKTI	GATC	5 cut(s)	12, 171, 264, 595, 778
BstMBI	GATC	5 cut(s)	9, 168, 261, 592, 775
BstMCI	CGRYCG	3 cut(s)	408, 427, 589
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 487, 559
BstNI	CCWGG	2 cut(s)	159, 694
BstSCI	CCNGG	4 cut(s)	101, 157, 515, 692
BstV1I	GCAGC	1 cut(s)	890
BstV2I	GAAGAC	1 cut(s)	102
BstX2I	RGATCY	3 cut(s)	168, 592, 775
BstYI	RGATCY	3 cut(s)	168, 592, 775
BsuI	GTATCC	1 cut(s)	349
BtgI	CCRYGG	2 cut(s)	59, 729
BtsCI	GGATG	1 cut(s)	709
BtsI	GCAGTG	1 cut(s)	510
BtsIMutI	CAGTG	2 cut(s)	510, 850
Cac8I	GCNNGC	2 cut(s)	133, 564
Cfr10I	RCCGGY	1 cut(s)	757
Cfr13I	GGNCC	1 cut(s)	329
CpoI	CGGWCCG	1 cut(s)	329
CsiI	ACCWGGT	1 cut(s)	692
Csp6I	GTAC	1 cut(s)	788
CspI	CGGWCCG	1 cut(s)	329
CviAII	CATG	2 cut(s)	60, 730
CviQI	GTAC	1 cut(s)	788
DdeI	CTNAG	1 cut(s)	825
DpnI	GATC	5 cut(s)	11, 170, 263, 594, 777
DpnII	GATC	5 cut(s)	9, 168, 261, 592, 775
DraIII	CACNNNGTG	2 cut(s)	73, 696
EciI	GGCGGA	2 cut(s)	130, 496
Ecl136II	GAGCTC	2 cut(s)	357, 625
Eco130I	CCWWGG	2 cut(s)	59, 729
Eco24I	GRGCYC	2 cut(s)	359, 627
Eco47I	GGWCC	1 cut(s)	329
Eco53kI	GAGCTC	2 cut(s)	357, 625
Eco57I	CTGAAG	1 cut(s)	834
EcoICRI	GAGCTC	2 cut(s)	357, 625
EcoRI	GAATTC	1 cut(s)	913
EcoRII	CCWGG	2 cut(s)	157, 692
EcoT14I	CCWWGG	2 cut(s)	59, 729
EcoT38I	GRGCYC	2 cut(s)	359, 627
ErhI	CCWWGG	2 cut(s)	59, 729
FaeI	CATG	2 cut(s)	63, 733
FatI	CATG	2 cut(s)	59, 729
FbaI	TGATCA	1 cut(s)	9
Fnu4HI	GCNGC	1 cut(s)	879
FokI	GGATG	1 cut(s)	716
FriOI	GRGCYC	2 cut(s)	359, 627
Fsp4HI	GCNGC	1 cut(s)	879
GluI	GCNGC	1 cut(s)	879
GsuI	CTGGAG	1 cut(s)	603
HapII	CCGG	4 cut(s)	103, 313, 517, 758
Hin1II	CATG	2 cut(s)	63, 733
HinfI	GANTC	8 cut(s)	47, 118, 149, 324, 503, 644, 725, 793
HpaII	CCGG	4 cut(s)	103, 313, 517, 758
HphI	GGTGA	4 cut(s)	4, 104, 271, 663
Hpy188I	TCNGA	2 cut(s)	502, 784
Hpy188III	TCNNGA	5 cut(s)	79, 347, 422, 596, 620
HpyAV	CCTTC	3 cut(s)	514, 829, 853
HpyCH4III	ACNGT	4 cut(s)	309, 428, 464, 751
HpyCH4IV	ACGT	1 cut(s)	374
HpyCH4V	TGCA	4 cut(s)	240, 284, 553, 713
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 487, 559
HpyF3I	CTNAG	1 cut(s)	825
HpySE526I	ACGT	1 cut(s)	374
Hsp92II	CATG	2 cut(s)	63, 733
Ksp22I	TGATCA	1 cut(s)	9
Kzo9I	GATC	5 cut(s)	9, 168, 261, 592, 775
LmnI	GCTCC	4 cut(s)	354, 362, 605, 804
Lsp1109I	GCAGC	1 cut(s)	890
LweI	GCATC	2 cut(s)	171, 281
MabI	ACCWGGT	1 cut(s)	692
MaeII	ACGT	1 cut(s)	374
MaeIII	GTNAC	2 cut(s)	395, 930
MalI	GATC	5 cut(s)	11, 170, 263, 594, 777
MbiI	CCGCTC	1 cut(s)	352
MboI	GATC	5 cut(s)	9, 168, 261, 592, 775
MboII	GAAGA	5 cut(s)	24, 107, 155, 158, 845
MflI	RGATCY	3 cut(s)	168, 592, 775
MhlI	GDGCHC	2 cut(s)	359, 627
MnlI	CCTC	5 cut(s)	34, 133, 182, 795, 861
MroXI	GAANNNNTTC	1 cut(s)	524
MseI	TTAA	4 cut(s)	204, 267, 371, 570
MspA1I	CMGCKG	1 cut(s)	44
MspI	CCGG	4 cut(s)	103, 313, 517, 758
MspR9I	CCNGG	4 cut(s)	103, 159, 517, 694
MvaI	CCWGG	2 cut(s)	159, 694
MwoI	GCNNNNNNNGC	3 cut(s)	50, 487, 559
NciI	CCSGG	2 cut(s)	103, 517
NcoI	CCATGG	2 cut(s)	59, 729
NdeII	GATC	5 cut(s)	9, 168, 261, 592, 775
NlaIII	CATG	2 cut(s)	63, 733
NlaIV	GGNNCC	2 cut(s)	311, 777
NmeAIII	GCCGAG	1 cut(s)	606
NmuCI	GTSAC	2 cut(s)	395, 930
PcsI	WCGNNNNNNNCGW	2 cut(s)	333, 828
PdmI	GAANNNNTTC	1 cut(s)	524
PfeI	GAWTC	8 cut(s)	47, 118, 149, 324, 503, 644, 725, 793
PfoI	TCCNGGA	1 cut(s)	157
PkrI	GCNGC	1 cut(s)	880
PsiI	TTATAA	1 cut(s)	297
Psp124BI	GAGCTC	2 cut(s)	359, 627
Psp6I	CCWGG	2 cut(s)	157, 692
PspGI	CCWGG	2 cut(s)	157, 692
PspN4I	GGNNCC	2 cut(s)	311, 777
PspPI	GGNCC	1 cut(s)	329
PsuI	RGATCY	3 cut(s)	168, 592, 775
PvuII	CAGCTG	1 cut(s)	44
RsaI	GTAC	1 cut(s)	789
RsaNI	GTAC	1 cut(s)	788
Rsr2I	CGGWCCG	1 cut(s)	329
RsrII	CGGWCCG	1 cut(s)	329
SacI	GAGCTC	2 cut(s)	359, 627
SaqAI	TTAA	4 cut(s)	204, 267, 371, 570
SatI	GCNGC	1 cut(s)	879
Sau3AI	GATC	5 cut(s)	9, 168, 261, 592, 775
Sau96I	GGNCC	1 cut(s)	329
ScrFI	CCNGG	4 cut(s)	103, 159, 517, 694
SduI	GDGCHC	2 cut(s)	359, 627
SexAI	ACCWGGT	1 cut(s)	692
SfaNI	GCATC	2 cut(s)	171, 281
SinI	GGWCC	1 cut(s)	329
SmlI	CTYRAG	2 cut(s)	79, 883
SmoI	CTYRAG	2 cut(s)	79, 883
SsiI	CCGC	3 cut(s)	115, 352, 507
SstI	GAGCTC	2 cut(s)	359, 627
StyD4I	CCNGG	4 cut(s)	101, 157, 515, 692
StyI	CCWWGG	2 cut(s)	59, 729
TaaI	ACNGT	4 cut(s)	309, 428, 464, 751
TaiI	ACGT	1 cut(s)	377
TaqI	TCGA	4 cut(s)	174, 318, 385, 423
TaqII	GACCGA	3 cut(s)	317, 394, 603
TfiI	GAWTC	8 cut(s)	47, 118, 149, 324, 503, 644, 725, 793
Tru1I	TTAA	4 cut(s)	204, 267, 371, 570
Tru9I	TTAA	4 cut(s)	204, 267, 371, 570
TscAI	CASTG	2 cut(s)	517, 850
TseFI	GTSAC	2 cut(s)	395, 930
TseI	GCWGC	1 cut(s)	878
Tsp45I	GTSAC	2 cut(s)	395, 930
TspDTI	ATGAA	3 cut(s)	190, 517, 720
TspGWI	ACGGA	3 cut(s)	321, 768, 805
TspRI	CASTG	2 cut(s)	517, 850
VpaK11BI	GGWCC	1 cut(s)	329
XapI	RAATTY	4 cut(s)	242, 717, 913, 941
XcmI	CCANNNNNNNNNTGG	1 cut(s)	697
XmnI	GAANNNNTTC	1 cut(s)	524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.