Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008737

Physical Location & Seq

Genomic Coordinates Forward (+)

63238405 .. 63240663

Gene Structure 2259 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0459300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2025 bp

ATGGGCAAGACTACCCTTGCAAAGTTAGTGTTTGAGAGAACTTCCCATCATTTTGAAGTTAGCAAGTTTCTCCTTAACGTTGGTGAGGTTTTTGCAAAACATGGTACTTTAGTTGATCTACAAAAGCAACTTCTTTCACCAATCTTAAAGGAAAATATTTGGGATGAGCAAAGAGGAACCTTTCTCATTAGGAAATGCTTGTTTAATAAAAAAGTTCTTCTCGTTGTTGATAATGTTGATCACTATAACCAACTAGAAATGTTGGTTGGATATAAATCATGGTTTGGTGAGGGAAGCAGAATCATTATTACAACTAGAGATGAACGTTTGCTCATCGAGCATGATATAGAATTATCATTTAAGGCACAAGGACTAAATAGCAACAAAGCTCTGGAGCTCTTTTGTCAGAATGCGTTCAAAAAAGATCAACCTGATGAAGGGTTTTCAAAACTGTCCAAGTGTTTTGTAGATTATGCCAAAGGACTTCCATTAGCTCTTAAAATTTTGGGACGTTCTTTGTATAAGAGAGATCTAGATGCATGGAATAGTGCATTTAATAAACTCAAGAAGATTCCTATTCCAACAATATATGATTCGCTCAAACTAAGTTTTGATGCACTGGATGATATAGAGAAGGGTATTTTTCTTGATGTTGCATGTTTCTACAATGGGATGGAGAAAAGACGAGTAGTTGAAATACTAGAAAGCTGTGGCATTTGTAGTCATATTGGGATAGATGTTCTCATTCAGAAATCTCTGTTATTTGTTGGGAGAGACAACAATCTAGAGATGCATGATTTGATACAAGAAATGGCATGGGAAATTGTTCGTCAAGAGTCCTGTGAAGAACCTGGTCTACGTAGTCGTTTGTGCCATCGTAAAGATATCTTTCATGTATTCATGAGAAATATGGGAACAGAAGCAATCAGAGGCATCCGCTTAAGCTTATTAGAATTACAAGTGGCAGACTTAAACTGGAATTGTGAAGGCTTCTCTAAGATGTTGAAACTAATGTTTCTCGAATTTGATAATTTAATTATCTTTTGTGCGCCCAAATTCCTCCCCAATTCTTTAAGAATTCTCAAGTGGAGTTGGTATCCTTCCAAATTTCTTCCAGCAAGTTACCGACCAAATTTACTAGTTGAACTTAAGATGGAAAACAGTAAACTTGTTCGGCTTTGGGATGGAAAACAGGACTTGCCTAACCTGAAATATTTGGATCTTAGCCGCTCCAAAAACTTGACCAAGACTCCAGATTTCACAGGTATTCCGAATCTTGAAAGTCTAAGCTTTTTATATTGTACACGTTTGGTTGAGATCCACCCATCCATTGCAGTTAACAAAAAGCATAAAGTGTTGAACCTTTTTGGATGCAAAAGTATTAAGAGTTTCTCAAGTGAGATAGATATGGATTCTCTCGAGTATTTCAACCTTAATGAGTGCTCAAAACTAAAGATTCCAGAATTTTCTAGAGGGATGAAAAAATTGTCATCTCTTGACCTAGGTGGGACTGCTATTCAGAAAATACCTTCATCAGTTGAACATTTGGTTAGCCTTACTTATCTGGATCTAAGTTATTGCAGAAGTCTCATATGCCTTCCGAGTGCCATTTTTAAACTGAAGTCTCTTAAAAGCCTCAATATGGATGGATGCTTTAAACTTCAGAAGCTCCTAGAAAACACGGGGGAGATGGAGTCTTTAGAGAAGCAGCTTTGGGTCAGTCAAACTGCTAAGAGAGAGCCGCCACCCTTCCTTCATATGAAATATCTCAGAAGACTAAGTTTTGGTGCGTCGCCTTTTATAAGGATGCTTGGCGCGGGCTTTTGTGAGCCTTTGCGCATGGCGTTGCCTTCTCAAAGGACTTTACGCTCTTTGGAGTCGTTAACTCTAATTGATGCTAATCTTGGTCAAGGAGCTATTCCGGATGATATTGGCTACTGCTTGTCATCTATACGTATCTTGGTTCTTAGTGGAAATGATTTTGTTAGTCTTCCTACAAGTATTAATTGCCTTCTTGTTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0042762 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

EIN3

Protein Analysis

674

Amino Acids

77.1

Weight (kDa)

8.77

Isoelectric Point (pI)

41.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NB-ARC	PF00931	1 - 142	2e-12	NB-ARC domain
WHD_ROQ1	PF23282	211 - 280	1.9e-19	Disease resistance protein Roq1-like, winged-helix domain
LRR_13	PF23286	471 - 556	1.8e-07	Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14	PF23598	493 - 671	1.5e-11	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0008737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73730 AT1G73730
fragaria_vesca	FvH4_3g43580 FvH4_3g43580
malus_domestica	MD03G1020800.v1.1 MD11G1022400.v1.1
prunus_persica	Prupe.6G018200_v2.0.a1 Prupe.6G018200_v2.0.a1
pyrus_communis	pycom03g01780 pycom11g01800
rosa_chinensis	RchiOBHm_Chr5g0078151
rosa_laevigata	RLG00000036758
rosa_multiflora	Rmu_sc0018349.1_g000004 Rmu_sc0018349.1_g000007
rosa_roxburghii	Rroxscaffold_1G00003980
rosa_rugosa	Rorug05G0459100 Rorug05G0459200 Rorug05G0459300
rosa_samantha	Rh5AG513600 Rh5BG536600 Rh5CG560000 Rh5DG548200
rosa_wichuraiana	Rw5G047660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1802
Acc16I	TGCGCA	1 cut(s)	1838
AccBSI	CCGCTC	1 cut(s)	1230
AccI	GTMKAC	1 cut(s)	856
AccII	CGCG	1 cut(s)	1817
AccIII	TCCGGA	1 cut(s)	1921
AciI	CCGC	4 cut(s)	937, 1228, 1742, 1817
AclI	AACGTT	2 cut(s)	78, 325
AclWI	GGATC	3 cut(s)	1227, 1312, 1575
AcsI	RAATTY	7 cut(s)	501, 1022, 1055, 1077, 1106, 1132, 1463
AcuI	CTGAAG	2 cut(s)	1640, 1646
AfaI	GTAC	2 cut(s)	106, 1303
AfiI	CCNNNNNNNGG	2 cut(s)	437, 1642
AflII	CTTAAG	2 cut(s)	940, 1148
AflIII	ACRYGT	1 cut(s)	1304
AhlI	ACTAGT	1 cut(s)	1138
AjnI	CCWGG	1 cut(s)	850
AjuI	GAANNNNNNNTTGG	2 cut(s)	249, 281
AluBI	AGCT	9 cut(s)	389, 397, 494, 708, 945, 1290, 1669, 1711, 1916
AluI	AGCT	9 cut(s)	389, 397, 494, 708, 945, 1290, 1669, 1711, 1916
Alw21I	GWGCWC	2 cut(s)	399, 1445
Alw26I	GTCTC	3 cut(s)	768, 1592, 1629
AlwI	GGATC	3 cut(s)	1227, 1312, 1575
Ama87I	CYCGRG	1 cut(s)	1418
Aor13HI	TCCGGA	1 cut(s)	1921
ApeKI	GCWGC	1 cut(s)	1708
ApoI	RAATTY	7 cut(s)	501, 1022, 1055, 1077, 1106, 1132, 1463
AseI	ATTAAT	1 cut(s)	2004
Asp700I	GAANNNNTTC	2 cut(s)	413, 825
AspA2I	CCTAGG	1 cut(s)	1501
AspLEI	GCGC	3 cut(s)	1051, 1817, 1839
AsuHPI	GGTGA	3 cut(s)	95, 129, 299
AvaI	CYCGRG	1 cut(s)	1418
AvrII	CCTAGG	1 cut(s)	1501
BaeI	ACNNNNGTAYC	2 cut(s)	96, 129
BanII	GRGCYC	1 cut(s)	399
BbsI	GAAGAC	2 cut(s)	1780, 1982
Bbv12I	GWGCWC	2 cut(s)	399, 1445
BbvI	GCAGC	1 cut(s)	1720
BccI	CCATC	8 cut(s)	54, 667, 882, 1147, 1178, 1333, 1640, 1684
BciT130I	CCWGG	1 cut(s)	852
BciVI	GTATCC	1 cut(s)	1107
BclI	TGATCA	1 cut(s)	238
BcoDI	GTCTC	3 cut(s)	768, 1592, 1629
BcuI	ACTAGT	1 cut(s)	1138
BfaI	CTAG	9 cut(s)	254, 315, 533, 701, 785, 1139, 1470, 1502, 1673
BfrI	CTTAAG	2 cut(s)	940, 1148
BfuI	GTATCC	1 cut(s)	1107
BglII	AGATCT	1 cut(s)	529
BisI	GCNGC	3 cut(s)	1228, 1709, 1742
BlnI	CCTAGG	1 cut(s)	1501
BlsI	GCNGC	3 cut(s)	1229, 1710, 1743
Bme1390I	CCNGG	1 cut(s)	852
BmeT110I	CYCGRG	1 cut(s)	1418
BmiI	GGNNCC	1 cut(s)	178
BmrFI	CCNGG	1 cut(s)	852
BmsI	GCATC	8 cut(s)	526, 604, 780, 942, 1361, 1640, 1797, 1885
BpiI	GAAGAC	2 cut(s)	1780, 1982
BpmI	CTGGAG	2 cut(s)	413, 1236
BpuEI	CTTGAG	3 cut(s)	548, 1067, 1378
BsaAI	YACGTR	2 cut(s)	860, 1955
BsaBI	GATNNNNATC	2 cut(s)	274, 1899
BsaJI	CCNNGG	1 cut(s)	1501
BsaWI	WCCGGW	1 cut(s)	1921
BsaXI	ACNNNNNCTCC	4 cut(s)	1234, 1264, 1679, 1709
Bsc4I	CCNNNNNNNGG	2 cut(s)	437, 1642
Bse1I	ACTGG	2 cut(s)	624, 980
Bse3DI	GCAATG	1 cut(s)	1329
Bse8I	GATNNNNATC	2 cut(s)	274, 1899
BseAI	TCCGGA	1 cut(s)	1921
BseBI	CCWGG	1 cut(s)	852
BseDI	CCNNGG	1 cut(s)	1501
BseJI	GATNNNNATC	2 cut(s)	274, 1899
BseLI	CCNNNNNNNGG	2 cut(s)	437, 1642
BseMI	GCAATG	1 cut(s)	1329
BseMII	CTCAG	1 cut(s)	1783
BseNI	ACTGG	2 cut(s)	624, 980
BseXI	GCAGC	1 cut(s)	1720
Bsh1236I	CGCG	1 cut(s)	1817
BsiHKAI	GWGCWC	2 cut(s)	399, 1445
BsiHKCI	CYCGRG	1 cut(s)	1418
BsiSI	CCGG	1 cut(s)	1922
BslFI	GGGAC	2 cut(s)	522, 1522
BslI	CCNNNNNNNGG	2 cut(s)	437, 1642
BsmAI	GTCTC	3 cut(s)	768, 1592, 1629
BsmFI	GGGAC	2 cut(s)	522, 1522
BsmI	GAATGC	1 cut(s)	415
BsoBI	CYCGRG	1 cut(s)	1418
Bsp1286I	GDGCHC	2 cut(s)	399, 1445
Bsp13I	TCCGGA	1 cut(s)	1921
Bsp1407I	TGTACA	1 cut(s)	1301
Bsp143I	GATC	7 cut(s)	115, 238, 424, 529, 1219, 1317, 1567
BspACI	CCGC	4 cut(s)	937, 1228, 1742, 1817
BspCNI	CTCAG	1 cut(s)	1782
BspEI	TCCGGA	1 cut(s)	1921
BspFNI	CGCG	1 cut(s)	1817
BspHI	TCATGA	1 cut(s)	900
BspLI	GGNNCC	1 cut(s)	178
BspPI	GGATC	3 cut(s)	1227, 1312, 1575
BspTI	CTTAAG	2 cut(s)	940, 1148
BsrBI	CCGCTC	1 cut(s)	1230
BsrDI	GCAATG	1 cut(s)	1329
BsrGI	TGTACA	1 cut(s)	1301
BsrI	ACTGG	2 cut(s)	624, 980
BssECI	CCNNGG	1 cut(s)	1501
BssMI	GATC	7 cut(s)	115, 238, 424, 529, 1219, 1317, 1567
BssT1I	CCWWGG	1 cut(s)	1501
Bst2UI	CCWGG	1 cut(s)	852
Bst4CI	ACNGT	2 cut(s)	453, 1163
BstAFI	CTTAAG	2 cut(s)	940, 1148
BstAUI	TGTACA	1 cut(s)	1301
BstBAI	YACGTR	2 cut(s)	860, 1955
BstC8I	GCNNGC	1 cut(s)	1819
BstDEI	CTNAG	9 cut(s)	605, 996, 1223, 1286, 1571, 1731, 1769, 1778, 1967
BstENI	CCTNNNNNAGG	1 cut(s)	435
BstFNI	CGCG	1 cut(s)	1817
BstHHI	GCGC	3 cut(s)	1051, 1817, 1839
BstKTI	GATC	7 cut(s)	118, 241, 427, 532, 1222, 1320, 1570
BstMAI	GTCTC	3 cut(s)	768, 1592, 1629
BstMBI	GATC	7 cut(s)	115, 238, 424, 529, 1219, 1317, 1567
BstMWI	GCNNNNNNNGC	1 cut(s)	337
BstNI	CCWGG	1 cut(s)	852
BstNSI	RCATGY	1 cut(s)	660
BstSCI	CCNGG	1 cut(s)	850
BstSNI	TACGTA	2 cut(s)	860, 1955
BstUI	CGCG	1 cut(s)	1817
BstV1I	GCAGC	1 cut(s)	1720
BstV2I	GAAGAC	2 cut(s)	1780, 1982
BstX2I	RGATCY	4 cut(s)	529, 1219, 1317, 1567
BstYI	RGATCY	4 cut(s)	529, 1219, 1317, 1567
BsuI	GTATCC	1 cut(s)	1107
BtsIMutI	CAGTG	1 cut(s)	617
Cac8I	GCNNGC	1 cut(s)	1819
CciI	TCATGA	1 cut(s)	900
CfoI	GCGC	3 cut(s)	1051, 1817, 1839
CseI	GACGC	1 cut(s)	1779
CsiI	ACCWGGT	1 cut(s)	850
Csp6I	GTAC	2 cut(s)	105, 1302
CviQI	GTAC	2 cut(s)	105, 1302
DdeI	CTNAG	9 cut(s)	605, 996, 1223, 1286, 1571, 1731, 1769, 1778, 1967
DpnI	GATC	7 cut(s)	117, 240, 426, 531, 1221, 1319, 1569
DpnII	GATC	7 cut(s)	115, 238, 424, 529, 1219, 1317, 1567
DraI	TTTAAA	2 cut(s)	1615, 1657
Ecl136II	GAGCTC	1 cut(s)	397
Eco105I	TACGTA	2 cut(s)	860, 1955
Eco130I	CCWWGG	1 cut(s)	1501
Eco24I	GRGCYC	1 cut(s)	399
Eco32I	GATATC	1 cut(s)	886
Eco53kI	GAGCTC	1 cut(s)	397
Eco57I	CTGAAG	2 cut(s)	1640, 1646
Eco88I	CYCGRG	1 cut(s)	1418
EcoICRI	GAGCTC	1 cut(s)	397
EcoNI	CCTNNNNNAGG	1 cut(s)	435
EcoRI	GAATTC	1 cut(s)	1077
EcoRII	CCWGG	1 cut(s)	850
EcoRV	GATATC	1 cut(s)	886
EcoT14I	CCWWGG	1 cut(s)	1501
EcoT22I	ATGCAT	2 cut(s)	541, 795
EcoT38I	GRGCYC	1 cut(s)	399
ErhI	CCWWGG	1 cut(s)	1501
FaqI	GGGAC	2 cut(s)	522, 1522
FauI	CCCGC	1 cut(s)	1810
FauNDI	CATATG	2 cut(s)	1592, 1758
FbaI	TGATCA	1 cut(s)	238
FblI	GTMKAC	1 cut(s)	856
Fnu4HI	GCNGC	3 cut(s)	1228, 1709, 1742
FriOI	GRGCYC	1 cut(s)	399
Fsp4HI	GCNGC	3 cut(s)	1228, 1709, 1742
FspBI	CTAG	9 cut(s)	254, 315, 533, 701, 785, 1139, 1470, 1502, 1673
FspI	TGCGCA	1 cut(s)	1838
GlaI	GCGC	3 cut(s)	1050, 1816, 1838
GluI	GCNGC	3 cut(s)	1228, 1709, 1742
GsuI	CTGGAG	2 cut(s)	413, 1236
HapII	CCGG	1 cut(s)	1922
HgaI	GACGC	1 cut(s)	1779
HhaI	GCGC	3 cut(s)	1051, 1817, 1839
Hin6I	GCGC	3 cut(s)	1049, 1815, 1837
HinP1I	GCGC	3 cut(s)	1049, 1815, 1837
HincII	GTYRAC	2 cut(s)	1339, 1884
HindII	GTYRAC	2 cut(s)	1339, 1884
HindIII	AAGCTT	2 cut(s)	943, 1288
HpaI	GTTAAC	2 cut(s)	1339, 1884
HpaII	CCGG	1 cut(s)	1922
HphI	GGTGA	3 cut(s)	95, 129, 299
Hpy166II	GTNNAC	5 cut(s)	857, 1166, 1304, 1339, 1884
Hpy188I	TCNGA	8 cut(s)	408, 750, 929, 1272, 1521, 1602, 1665, 1772
Hpy8I	GTNNAC	5 cut(s)	857, 1166, 1304, 1339, 1884
Hpy99I	CGWCG	1 cut(s)	1795
HpyCH4III	ACNGT	2 cut(s)	453, 1163
HpyCH4IV	ACGT	6 cut(s)	78, 325, 511, 859, 1306, 1954
HpyF10VI	GCNNNNNNNGC	1 cut(s)	337
HpyF3I	CTNAG	9 cut(s)	605, 996, 1223, 1286, 1571, 1731, 1769, 1778, 1967
HpySE526I	ACGT	6 cut(s)	78, 325, 511, 859, 1306, 1954
HspAI	GCGC	3 cut(s)	1049, 1815, 1837
Kpn2I	TCCGGA	1 cut(s)	1921
Ksp22I	TGATCA	1 cut(s)	238
KspAI	GTTAAC	2 cut(s)	1339, 1884
Kzo9I	GATC	7 cut(s)	115, 238, 424, 529, 1219, 1317, 1567
LmnI	GCTCC	4 cut(s)	394, 1235, 1674, 1913
Lsp1109I	GCAGC	1 cut(s)	1720
LweI	GCATC	8 cut(s)	526, 604, 780, 942, 1361, 1640, 1797, 1885
MabI	ACCWGGT	1 cut(s)	850
MaeI	CTAG	9 cut(s)	254, 315, 533, 701, 785, 1139, 1470, 1502, 1673
MaeII	ACGT	6 cut(s)	78, 325, 511, 859, 1306, 1954
MaeIII	GTNAC	1 cut(s)	1121
MalI	GATC	7 cut(s)	117, 240, 426, 531, 1221, 1319, 1569
MbiI	CCGCTC	1 cut(s)	1230
MboI	GATC	7 cut(s)	115, 238, 424, 529, 1219, 1317, 1567
MboII	GAAGA	6 cut(s)	209, 580, 857, 1103, 1785, 1982
MflI	RGATCY	4 cut(s)	529, 1219, 1317, 1567
MhlI	GDGCHC	2 cut(s)	399, 1445
MlyI	GAGTC	4 cut(s)	845, 1243, 1703, 1886
MmeI	TCCRAC	2 cut(s)	247, 605
MnlI	CCTC	7 cut(s)	79, 167, 283, 923, 1070, 1466, 1646
Mph1103I	ATGCAT	2 cut(s)	541, 795
MroI	TCCGGA	1 cut(s)	1921
MroXI	GAANNNNTTC	2 cut(s)	413, 825
MspCI	CTTAAG	2 cut(s)	940, 1148
MspI	CCGG	1 cut(s)	1922
MspR9I	CCNGG	1 cut(s)	852
Mva1269I	GAATGC	1 cut(s)	415
MvaI	CCWGG	1 cut(s)	852
MvnI	CGCG	1 cut(s)	1817
MwoI	GCNNNNNNNGC	1 cut(s)	337
NdeI	CATATG	2 cut(s)	1592, 1758
NdeII	GATC	7 cut(s)	115, 238, 424, 529, 1219, 1317, 1567
NlaIV	GGNNCC	1 cut(s)	178
NsbI	TGCGCA	1 cut(s)	1838
NsiI	ATGCAT	2 cut(s)	541, 795
NspI	RCATGY	1 cut(s)	660
PaeR7I	CTCGAG	1 cut(s)	1418
PagI	TCATGA	1 cut(s)	900
PctI	GAATGC	1 cut(s)	415
PdmI	GAANNNNTTC	2 cut(s)	413, 825
PfeI	GAWTC	6 cut(s)	300, 571, 593, 1273, 1412, 1456
PkrI	GCNGC	3 cut(s)	1229, 1710, 1743
PleI	GAGTC	4 cut(s)	844, 1243, 1702, 1885
PpsI	GAGTC	4 cut(s)	844, 1243, 1702, 1885
Ppu21I	YACGTR	2 cut(s)	860, 1955
PshBI	ATTAAT	1 cut(s)	2004
PsiI	TTATAA	1 cut(s)	1802
Psp124BI	GAGCTC	1 cut(s)	399
Psp1406I	AACGTT	2 cut(s)	78, 325
Psp6I	CCWGG	1 cut(s)	850
PspGI	CCWGG	1 cut(s)	850
PspN4I	GGNNCC	1 cut(s)	178
PsrI	GAACNNNNNNTAC	2 cut(s)	840, 872
PsuI	RGATCY	4 cut(s)	529, 1219, 1317, 1567
RsaI	GTAC	2 cut(s)	106, 1303
RsaNI	GTAC	2 cut(s)	105, 1302
SacI	GAGCTC	1 cut(s)	399
SatI	GCNGC	3 cut(s)	1228, 1709, 1742
Sau3AI	GATC	7 cut(s)	115, 238, 424, 529, 1219, 1317, 1567
SchI	GAGTC	4 cut(s)	845, 1243, 1703, 1886
ScrFI	CCNGG	1 cut(s)	852
SduI	GDGCHC	2 cut(s)	399, 1445
SexAI	ACCWGGT	1 cut(s)	850
SfaNI	GCATC	8 cut(s)	526, 604, 780, 942, 1361, 1640, 1797, 1885
Sfr274I	CTCGAG	1 cut(s)	1418
SlaI	CTCGAG	1 cut(s)	1418
SmlI	CTYRAG	6 cut(s)	563, 940, 1082, 1148, 1393, 1418
SmoI	CTYRAG	6 cut(s)	563, 940, 1082, 1148, 1393, 1418
SnaBI	TACGTA	2 cut(s)	860, 1955
SpeI	ACTAGT	1 cut(s)	1138
SsiI	CCGC	4 cut(s)	937, 1228, 1742, 1817
SspI	AATATT	2 cut(s)	157, 1214
SspMI	CTAG	9 cut(s)	254, 315, 533, 701, 785, 1139, 1470, 1502, 1673
SstI	GAGCTC	1 cut(s)	399
StyD4I	CCNGG	1 cut(s)	850
StyI	CCWWGG	1 cut(s)	1501
TaaI	ACNGT	2 cut(s)	453, 1163
TaiI	ACGT	6 cut(s)	81, 328, 514, 862, 1309, 1957
TaqI	TCGA	3 cut(s)	336, 1020, 1419
TatI	WGTACW	1 cut(s)	1301
TauI	GCSGC	2 cut(s)	1230, 1744
TfiI	GAWTC	6 cut(s)	300, 571, 593, 1273, 1412, 1456
TscAI	CASTG	1 cut(s)	624
TseI	GCWGC	1 cut(s)	1708
TspDTI	ATGAA	9 cut(s)	336, 450, 881, 889, 1493, 1521, 1745, 1775, 2009
TspRI	CASTG	1 cut(s)	624
Vha464I	CTTAAG	2 cut(s)	940, 1148
VspI	ATTAAT	1 cut(s)	2004
XagI	CCTNNNNNAGG	1 cut(s)	435
XapI	RAATTY	7 cut(s)	501, 1022, 1055, 1077, 1106, 1132, 1463
XbaI	TCTAGA	3 cut(s)	532, 784, 1469
XceI	RCATGY	1 cut(s)	660
XhoI	CTCGAG	1 cut(s)	1418
XmaJI	CCTAGG	1 cut(s)	1501
XmiI	GTMKAC	1 cut(s)	856
XmnI	GAANNNNTTC	2 cut(s)	413, 825
XspI	CTAG	9 cut(s)	254, 315, 533, 701, 785, 1139, 1470, 1502, 1673
Zsp2I	ATGCAT	2 cut(s)	541, 795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.